Clone BO04437 Report

Search the DGRC for BO04437

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:44
Well:37
Vector:pDNR-Dual
Associated Gene/TranscriptSdc-RA
Protein status:BO04437.pep: validated full length
Sequenced Size:1231

Clone Sequence Records

BO04437.3prime Sequence

914 bp (881 high quality bases) assembled on 2005-12-01

> BO04437.3prime
ATGGTCTAGAAAGCTTGCGGCGTAGAACTCGCGGTTATTCGCATTTTTCG
CATACGAATTGTTGGCCGGCGATCTCTTTGGCTCGTCCAGCGCATAGGAT
CCCTCGTCCTTTTTCCTCATGCGGTACACGATGAACATGACCACGAGTAT
GGCGCAGAGCAGGCCAACGACGGCACCGCCAATGACAGCAGCCAGAATTC
CGGGCTGCGAGAAGAAGCTCGACGTGCGATCGTCCTCGCTCATGATGACC
ACTTCGTTGCCGTTGGGCCTGTGATCGATGCCCTTTGTGTCGGAGGGCTG
GCTATTCACGTTCGTATTGGGGTCCAATTCGTGCACGTTGCTGCCACCTG
CACCCGGTCCGCGCTCTGTAATATCTCCATCGTTGCCACCGATCCGCGGA
CCATCGATGTCGCTATCCCCATTGTCATCCTCATCGCCGCCATCCACATC
GATTTCATCCGTAGTGGGTATGTGACCAGTTTCAACGGTATTATGATGGA
CAACTGGCGGCAGATGTCCCGGCTCGGGACCATCGATGTCGATTTCTTTG
TCCAGCTCCTTGTTATAGTCATAGTCCTTATCGTCGCCATCGTCCTCATC
GTCATCCTCAGCATCAGCATCGATGCCATCGCCGCTGGACTCCGTATCCA
GATCCTTGTCGAATGGCGGGAACAGCGGTTGCTGCGGTTCTGCGGGAATC
GTGGGAGCCAACGTGGTGGTGGTGGTGCTACTGCTATTGGCAAAGGACGA
TATCTGGGTTGCTGCCGCCGTTGTGGTGGATGCGGGGGTTGTCGCTGTGG
GGGTTGTTGTCGGCATTGGTGTCGAAGTCGATGTTGTTGGGATTGTGGAT
GAGGTTTGTGTTGGTGTATGAGCTGTGTTTATGCCGGAGTTGCTGCTCTG
CGAGATGCGCGTGT

BO04437.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:05:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG10497-PA 1200 Sdc-RA 302..1197 914..19 4480 100 Minus
CG10497-PB 681 Sdc-RB 341..678 356..19 1690 100 Minus
CG10497-PC 681 Sdc-RC 341..678 356..19 1690 100 Minus
CG10497-PB 681 Sdc-RB 302..341 914..875 200 100 Minus
CG10497-PC 681 Sdc-RC 302..341 914..875 200 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:40:06
Subject Length Description Subject Range Query Range Score Percent Strand
Sdc-RA 2482 CG10497-RA 638..1533 914..19 4480 100 Minus
Sdc-RH 2245 CG10497-RH 404..1296 914..19 4425 99.7 Minus
Sdc-RD 1869 CG10497-RD 638..1530 914..19 4425 99.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:39:57
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 21398065..21398583 357..875 2595 100 Plus
2R 25286936 2R 21394566..21394736 19..189 855 100 Plus
2R 25286936 2R 21394878..21395045 189..356 840 100 Plus
2R 25286936 2R 21399175..21399213 876..914 195 100 Plus
Blast to na_te.dros performed 2015-02-11 23:40:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2413..2533 897..774 162 62.4 Minus
Dfun\Isfun-1 928 Dfun\Isfun-1 DFU309320 928bp Derived from AJ309320 (Rel. 68, Last updated, Version 1). 458..506 22..70 110 69.4 Plus

BO04437.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:02:53 Download gff for BO04437.3prime
Subject Subject Range Query Range Percent Splice Strand
Sdc-PA 302..1200 16..914 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:15:58 Download gff for BO04437.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10497-PA 302..1200 16..914 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:36:17 Download gff for BO04437.3prime
Subject Subject Range Query Range Percent Splice Strand
Sdc-RA 638..1533 19..914 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:50:05 Download gff for BO04437.3prime
Subject Subject Range Query Range Percent Splice Strand
Sdc-RA 638..1533 19..914 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:50:05 Download gff for BO04437.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 21394566..21394735 19..188 100 <- Plus
2R 21394878..21395045 189..356 100 <- Plus
2R 21398065..21398583 357..875 100 <- Plus
2R 21399175..21399213 876..914 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:36:17 Download gff for BO04437.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 17282071..17282240 19..188 100 <- Plus
arm_2R 17282383..17282550 189..356 100 <- Plus
arm_2R 17285570..17286088 357..875 100 <- Plus
arm_2R 17286680..17286718 876..914 100   Plus

BO04437.5prime Sequence

854 bp (812 high quality bases) assembled on 2005-11-29

> BO04437.5prime
GAAGTTATCAGTCGACATGAAGCCAAAGCAGAAGATTTCCGTAGAGCCGC
TATTGCTAGTCGCAATTCTCATCGGAGTTCTGGTAGCCGCCACCCACGCT
CAAGATCAGAAATCGGTGAAACCATCGGCGGCAGCGCCATCAGCAGCAGC
TTCTCGGCCCCATGATGAAATCTATATCGACGATGATAGCATCGAGGGAT
CCGGCGGACGCGGCGGTATACACGAAGATCTAGAGAAAGATCCGGACTAT
TCTGGCTCCGGCTTTGGACCCGATGACGAGGACGCCGAACCCGATCAGCA
TTCGCACAGTTCGCACAACACGCGCATCTCGCAGAGCAGCAACTCCGGCA
TAAACACAGCTCATACACCAACACAAACCTCATCCACAATCCCAACAACA
TCGACTTCGACACCAATGCCGACAACAACCCCCACAGCGACAACCCCCGC
ATCCACCACAACGGCGGCAGCAACCCAGATATCGTCCTTTGCCAATAGCA
GTAGCACCACCACCACCACGTTGGCTCCCACGATTCCCGCAGAACCGCAG
CAACCGCTGTTCCCGCCATTCGACAAGGATCTGGATACGGAGTCCAGCGG
CGATGGCATCGATGCTGATGCTGAGGATGACGATGAGGACGATGGCGACG
ATAAGGACTATGACTATAACAAGGAGCTGGACAAAGAAATCGACATCGAT
GGTCCCGAGCCGGGACATCTGCCGCCAGTTGTCCATCATAATACCGTTGA
AACTGGTCACATACCCACTACGGATGAAATCGATGTGGATGGCGGCGATG
AGGATGACAATGGGGATAGCGACATCGATGGTCCGCGGATCGGTGGCACG
ATGG

BO04437.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:05:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG10497-PA 1200 Sdc-RA 1..832 17..848 4160 100 Plus
CG10497-PB 681 Sdc-RB 1..341 17..357 1705 100 Plus
CG10497-PC 681 Sdc-RC 1..341 17..357 1705 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:21:23
Subject Length Description Subject Range Query Range Score Percent Strand
Sdc-RA 2482 CG10497-RA 337..1175 17..854 4170 99.9 Plus
Sdc-RD 1869 CG10497-RD 337..1172 17..854 4115 99.5 Plus
Sdc-RH 2245 CG10497-RH 195..938 109..854 3655 99.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:21:14
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 21398092..21398583 848..357 2460 100 Minus
2R 25286936 2R 21399175..21399313 356..218 695 100 Minus
2R 25286936 2R 21412311..21412421 217..107 555 100 Minus
2R 25286936 2R 21480091..21480183 109..17 465 100 Minus
Blast to na_te.dros performed 2015-02-12 06:21:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2374..2533 294..458 173 60.5 Plus

BO04437.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:02:54 Download gff for BO04437.5prime
Subject Subject Range Query Range Percent Splice Strand
Sdc-PA 1..839 17..854 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:16:00 Download gff for BO04437.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10497-PA 1..839 17..854 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:26:19 Download gff for BO04437.5prime
Subject Subject Range Query Range Percent Splice Strand
Sdc-RA 337..1175 17..854 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:05:56 Download gff for BO04437.5prime
Subject Subject Range Query Range Percent Splice Strand
Sdc-RA 337..1175 17..854 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:05:56 Download gff for BO04437.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 21398085..21398583 357..854 99 <- Minus
2R 21399175..21399313 218..356 100 <- Minus
2R 21412311..21412418 110..217 100 <- Minus
2R 21480091..21480183 17..109 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:26:19 Download gff for BO04437.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 17285590..17286088 357..854 99 <- Minus
arm_2R 17286680..17286818 218..356 100 <- Minus
arm_2R 17299816..17299923 110..217 100 <- Minus
arm_2R 17367596..17367688 17..109 100   Minus

BO04437.complete Sequence

1231 bp (1231 high quality bases) assembled on 2005-09-08

GenBank Submission: FJ629761

> BO04437.complete
GAAGTTATCAGTCGACATGAAGCCAAAGCAGAAGATTTCCGTAGAGCCGC
TATTGCTAGTCGCAATTCTCATCGGAGTTCTGGTAGCCGCCACCCACGCT
CAAGATCAGAAATCGGTGAAACCATCGGCGGCAGCGCCATCAGCAGCAGC
TTCTCGGCCCCATGATGAAATCTATATCGACGATGATAGCATCGAGGGAT
CCGGCGGACGCGGCGGTATACACGAAGATCTAGAGAAAGATCCGGACTAT
TCTGGCTCCGGCTTTGGACCCGATGACGAGGACGCCGAACCCGATCAGCA
TTCGCACAGTTCGCACAACACGCGCATCTCGCAGAGCAGCAACTCCGGCA
TAAACACAGCTCATACACCAACACAAACCTCATCCACAATCCCAACAACA
TCGACTTCGACACCAATGCCGACAACAACCCCCACAGCGACAACCCCCGC
ATCCACCACAACGGCGGCAGCAACCCAGATATCGTCCTTTGCCAATAGCA
GTAGCACCACCACCACCACGTTGGCTCCCACGATTCCCGCAGAACCGCAG
CAACCGCTGTTCCCGCCATTCGACAAGGATCTGGATACGGAGTCCAGCGG
CGATGGCATCGATGCTGATGCTGAGGATGACGATGAGGACGATGGCGACG
ATAAGGACTATGACTATAACAAGGAGCTGGACAAAGAAATCGACATCGAT
GGTCCCGAGCCGGGACATCTGCCGCCAGTTGTCCATCATAATACCGTTGA
AACTGGTCACATACCCACTACGGATGAAATCGATGTGGATGGCGGCGATG
AGGATGACAATGGGGATAGCGACATCGATGGTCCGCGGATCGGTGGCAAC
GATGGAGATATTACAGAGCGCGGACCGGGTGCAGGTGGCAGCAACGTGCA
CGAATTGGACCCCAATACGAACGTGAATAGCCAGCCCTCCGACACAAAGG
GCATCGATCACAGGCCCAACGGCAACGAAGTGGTCATCATGAGCGAGGAC
GATCGCACGTCGAGCTTCTTCTCGCAGCCCGGAATTCTGGCTGCTGTCAT
TGGCGGTGCCGTCGTTGGCCTGCTCTGCGCCATACTCGTGGTCATGTTCA
TCGTGTACCGCATGAGGAAAAAGGACGAGGGATCCTATGCGCTGGACGAG
CCAAAGAGATCGCCGGCCAACAATTCGTATGCGAAAAATGCGAATAACCG
CGAGTTCTACGCCGCAAGCTTTCTAGACCAT

BO04437.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:36:16
Subject Length Description Subject Range Query Range Score Percent Strand
Sdc-RA 1200 CG10497-PA 1..1197 17..1213 5985 100 Plus
Sdc-RD 1197 CG10497-PD 1..1194 17..1213 5905 99.7 Plus
Sdc-RJ 1488 CG10497-PJ 629..1485 357..1213 4285 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:36:17
Subject Length Description Subject Range Query Range Score Percent Strand
Sdc-RA 2482 CG10497-RA 337..1533 17..1213 5985 100 Plus
Sdc-RD 1869 CG10497-RD 337..1530 17..1213 5905 99.7 Plus
Sdc-RH 2245 CG10497-RH 195..1296 109..1213 5445 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:36:14
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 21398065..21398583 875..357 2595 100 Minus
2R 25286936 2R 21394566..21394736 1213..1043 855 100 Minus
2R 25286936 2R 21394878..21395045 1043..876 840 100 Minus
2R 25286936 2R 21399175..21399313 356..218 695 100 Minus
2R 25286936 2R 21412311..21412421 217..107 555 100 Minus
2R 25286936 2R 21480091..21480183 109..17 465 100 Minus
Blast to na_te.dros performed 2014-11-28 08:36:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2374..2533 294..458 173 60.5 Plus
Dfun\Isfun-1 928 Dfun\Isfun-1 DFU309320 928bp Derived from AJ309320 (Rel. 68, Last updated, Version 1). 458..506 1210..1162 110 69.4 Minus

BO04437.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:40:52 Download gff for BO04437.complete
Subject Subject Range Query Range Percent Splice Strand
Sdc-RA 1..1200 17..1216 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:59:36 Download gff for BO04437.complete
Subject Subject Range Query Range Percent Splice Strand
Sdc-RA 329..1525 17..1215 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:23:45 Download gff for BO04437.complete
Subject Subject Range Query Range Percent Splice Strand
Sdc-RA 337..1533 17..1215 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:40:52 Download gff for BO04437.complete
Subject Subject Range Query Range Percent Splice Strand
Sdc-RA 329..1525 17..1213 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:21:22 Download gff for BO04437.complete
Subject Subject Range Query Range Percent Splice Strand
Sdc-RA 337..1533 17..1215 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:21:22 Download gff for BO04437.complete
Subject Subject Range Query Range Percent Splice Strand
2R 21394563..21394735 1044..1215 98 <- Minus
2R 21394878..21395045 876..1043 100 <- Minus
2R 21398065..21398583 357..875 100 <- Minus
2R 21399175..21399313 218..356 100 <- Minus
2R 21412311..21412418 110..217 100 <- Minus
2R 21480091..21480183 17..109 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:23:45 Download gff for BO04437.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 17282068..17282240 1044..1215 98 <- Minus
arm_2R 17282383..17282550 876..1043 100 <- Minus
arm_2R 17285570..17286088 357..875 100 <- Minus
arm_2R 17286680..17286818 218..356 100 <- Minus
arm_2R 17299816..17299923 110..217 100 <- Minus
arm_2R 17367596..17367688 17..109 100   Minus

BO04437.pep Sequence

Translation from 16 to 1231

> BO04437.pep
MKPKQKISVEPLLLVAILIGVLVAATHAQDQKSVKPSAAAPSAAASRPHD
EIYIDDDSIEGSGGRGGIHEDLEKDPDYSGSGFGPDDEDAEPDQHSHSSH
NTRISQSSNSGINTAHTPTQTSSTIPTTSTSTPMPTTTPTATTPASTTTA
AATQISSFANSSSTTTTTLAPTIPAEPQQPLFPPFDKDLDTESSGDGIDA
DAEDDDEDDGDDKDYDYNKELDKEIDIDGPEPGHLPPVVHHNTVETGHIP
TTDEIDVDGGDEDDNGDSDIDGPRIGGNDGDITERGPGAGGSNVHELDPN
TNVNSQPSDTKGIDHRPNGNEVVIMSEDDRTSSFFSQPGILAAVIGGAVV
GLLCAILVVMFIVYRMRKKDEGSYALDEPKRSPANNSYAKNANNREFYAA
SFLDH

BO04437.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:31:33
Subject Length Description Subject Range Query Range Score Percent Strand
Sdc-PA 399 CG10497-PA 1..399 1..399 2096 100 Plus
Sdc-PD 398 CG10497-PD 1..398 1..399 2080 99.7 Plus
Sdc-PI 494 CG10497-PI 1..494 1..399 1553 67.4 Plus
Sdc-PJ 495 CG10497-PJ 1..495 1..399 1535 66.3 Plus
Sdc-PH 266 CG10497-PH 1..266 134..399 1411 100 Plus