Clone Sequence Records
BO04437.3prime Sequence
914 bp (881 high quality bases) assembled on 2005-12-01
> BO04437.3prime
ATGGTCTAGAAAGCTTGCGGCGTAGAACTCGCGGTTATTCGCATTTTTCG
CATACGAATTGTTGGCCGGCGATCTCTTTGGCTCGTCCAGCGCATAGGAT
CCCTCGTCCTTTTTCCTCATGCGGTACACGATGAACATGACCACGAGTAT
GGCGCAGAGCAGGCCAACGACGGCACCGCCAATGACAGCAGCCAGAATTC
CGGGCTGCGAGAAGAAGCTCGACGTGCGATCGTCCTCGCTCATGATGACC
ACTTCGTTGCCGTTGGGCCTGTGATCGATGCCCTTTGTGTCGGAGGGCTG
GCTATTCACGTTCGTATTGGGGTCCAATTCGTGCACGTTGCTGCCACCTG
CACCCGGTCCGCGCTCTGTAATATCTCCATCGTTGCCACCGATCCGCGGA
CCATCGATGTCGCTATCCCCATTGTCATCCTCATCGCCGCCATCCACATC
GATTTCATCCGTAGTGGGTATGTGACCAGTTTCAACGGTATTATGATGGA
CAACTGGCGGCAGATGTCCCGGCTCGGGACCATCGATGTCGATTTCTTTG
TCCAGCTCCTTGTTATAGTCATAGTCCTTATCGTCGCCATCGTCCTCATC
GTCATCCTCAGCATCAGCATCGATGCCATCGCCGCTGGACTCCGTATCCA
GATCCTTGTCGAATGGCGGGAACAGCGGTTGCTGCGGTTCTGCGGGAATC
GTGGGAGCCAACGTGGTGGTGGTGGTGCTACTGCTATTGGCAAAGGACGA
TATCTGGGTTGCTGCCGCCGTTGTGGTGGATGCGGGGGTTGTCGCTGTGG
GGGTTGTTGTCGGCATTGGTGTCGAAGTCGATGTTGTTGGGATTGTGGAT
GAGGTTTGTGTTGGTGTATGAGCTGTGTTTATGCCGGAGTTGCTGCTCTG
CGAGATGCGCGTGT
BO04437.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:05:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10497-PA | 1200 | Sdc-RA | 302..1197 | 914..19 | 4480 | 100 | Minus |
CG10497-PB | 681 | Sdc-RB | 341..678 | 356..19 | 1690 | 100 | Minus |
CG10497-PC | 681 | Sdc-RC | 341..678 | 356..19 | 1690 | 100 | Minus |
CG10497-PB | 681 | Sdc-RB | 302..341 | 914..875 | 200 | 100 | Minus |
CG10497-PC | 681 | Sdc-RC | 302..341 | 914..875 | 200 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:40:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Sdc-RA | 2482 | CG10497-RA | 638..1533 | 914..19 | 4480 | 100 | Minus |
Sdc-RH | 2245 | CG10497-RH | 404..1296 | 914..19 | 4425 | 99.7 | Minus |
Sdc-RD | 1869 | CG10497-RD | 638..1530 | 914..19 | 4425 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:39:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 21398065..21398583 | 357..875 | 2595 | 100 | Plus |
2R | 25286936 | 2R | 21394566..21394736 | 19..189 | 855 | 100 | Plus |
2R | 25286936 | 2R | 21394878..21395045 | 189..356 | 840 | 100 | Plus |
2R | 25286936 | 2R | 21399175..21399213 | 876..914 | 195 | 100 | Plus |
Blast to na_te.dros performed 2015-02-11 23:40:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2413..2533 | 897..774 | 162 | 62.4 | Minus |
Dfun\Isfun-1 | 928 | Dfun\Isfun-1 DFU309320 928bp Derived from AJ309320 (Rel. 68, Last updated, Version 1). | 458..506 | 22..70 | 110 | 69.4 | Plus |
BO04437.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:02:53 Download gff for
BO04437.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sdc-PA | 302..1200 | 16..914 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:15:58 Download gff for
BO04437.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10497-PA | 302..1200 | 16..914 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:36:17 Download gff for
BO04437.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sdc-RA | 638..1533 | 19..914 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:50:05 Download gff for
BO04437.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sdc-RA | 638..1533 | 19..914 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:50:05 Download gff for
BO04437.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 21394566..21394735 | 19..188 | 100 | <- | Plus |
2R | 21394878..21395045 | 189..356 | 100 | <- | Plus |
2R | 21398065..21398583 | 357..875 | 100 | <- | Plus |
2R | 21399175..21399213 | 876..914 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:36:17 Download gff for
BO04437.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 17282071..17282240 | 19..188 | 100 | <- | Plus |
arm_2R | 17282383..17282550 | 189..356 | 100 | <- | Plus |
arm_2R | 17285570..17286088 | 357..875 | 100 | <- | Plus |
arm_2R | 17286680..17286718 | 876..914 | 100 | | Plus |
BO04437.5prime Sequence
854 bp (812 high quality bases) assembled on 2005-11-29
> BO04437.5prime
GAAGTTATCAGTCGACATGAAGCCAAAGCAGAAGATTTCCGTAGAGCCGC
TATTGCTAGTCGCAATTCTCATCGGAGTTCTGGTAGCCGCCACCCACGCT
CAAGATCAGAAATCGGTGAAACCATCGGCGGCAGCGCCATCAGCAGCAGC
TTCTCGGCCCCATGATGAAATCTATATCGACGATGATAGCATCGAGGGAT
CCGGCGGACGCGGCGGTATACACGAAGATCTAGAGAAAGATCCGGACTAT
TCTGGCTCCGGCTTTGGACCCGATGACGAGGACGCCGAACCCGATCAGCA
TTCGCACAGTTCGCACAACACGCGCATCTCGCAGAGCAGCAACTCCGGCA
TAAACACAGCTCATACACCAACACAAACCTCATCCACAATCCCAACAACA
TCGACTTCGACACCAATGCCGACAACAACCCCCACAGCGACAACCCCCGC
ATCCACCACAACGGCGGCAGCAACCCAGATATCGTCCTTTGCCAATAGCA
GTAGCACCACCACCACCACGTTGGCTCCCACGATTCCCGCAGAACCGCAG
CAACCGCTGTTCCCGCCATTCGACAAGGATCTGGATACGGAGTCCAGCGG
CGATGGCATCGATGCTGATGCTGAGGATGACGATGAGGACGATGGCGACG
ATAAGGACTATGACTATAACAAGGAGCTGGACAAAGAAATCGACATCGAT
GGTCCCGAGCCGGGACATCTGCCGCCAGTTGTCCATCATAATACCGTTGA
AACTGGTCACATACCCACTACGGATGAAATCGATGTGGATGGCGGCGATG
AGGATGACAATGGGGATAGCGACATCGATGGTCCGCGGATCGGTGGCACG
ATGG
BO04437.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:05:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10497-PA | 1200 | Sdc-RA | 1..832 | 17..848 | 4160 | 100 | Plus |
CG10497-PB | 681 | Sdc-RB | 1..341 | 17..357 | 1705 | 100 | Plus |
CG10497-PC | 681 | Sdc-RC | 1..341 | 17..357 | 1705 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:21:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Sdc-RA | 2482 | CG10497-RA | 337..1175 | 17..854 | 4170 | 99.9 | Plus |
Sdc-RD | 1869 | CG10497-RD | 337..1172 | 17..854 | 4115 | 99.5 | Plus |
Sdc-RH | 2245 | CG10497-RH | 195..938 | 109..854 | 3655 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:21:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 21398092..21398583 | 848..357 | 2460 | 100 | Minus |
2R | 25286936 | 2R | 21399175..21399313 | 356..218 | 695 | 100 | Minus |
2R | 25286936 | 2R | 21412311..21412421 | 217..107 | 555 | 100 | Minus |
2R | 25286936 | 2R | 21480091..21480183 | 109..17 | 465 | 100 | Minus |
Blast to na_te.dros performed 2015-02-12 06:21:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2374..2533 | 294..458 | 173 | 60.5 | Plus |
BO04437.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:02:54 Download gff for
BO04437.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sdc-PA | 1..839 | 17..854 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:16:00 Download gff for
BO04437.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10497-PA | 1..839 | 17..854 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:26:19 Download gff for
BO04437.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sdc-RA | 337..1175 | 17..854 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:05:56 Download gff for
BO04437.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sdc-RA | 337..1175 | 17..854 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:05:56 Download gff for
BO04437.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 21398085..21398583 | 357..854 | 99 | <- | Minus |
2R | 21399175..21399313 | 218..356 | 100 | <- | Minus |
2R | 21412311..21412418 | 110..217 | 100 | <- | Minus |
2R | 21480091..21480183 | 17..109 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:26:19 Download gff for
BO04437.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 17285590..17286088 | 357..854 | 99 | <- | Minus |
arm_2R | 17286680..17286818 | 218..356 | 100 | <- | Minus |
arm_2R | 17299816..17299923 | 110..217 | 100 | <- | Minus |
arm_2R | 17367596..17367688 | 17..109 | 100 | | Minus |
BO04437.complete Sequence
1231 bp (1231 high quality bases) assembled on 2005-09-08
GenBank Submission: FJ629761
> BO04437.complete
GAAGTTATCAGTCGACATGAAGCCAAAGCAGAAGATTTCCGTAGAGCCGC
TATTGCTAGTCGCAATTCTCATCGGAGTTCTGGTAGCCGCCACCCACGCT
CAAGATCAGAAATCGGTGAAACCATCGGCGGCAGCGCCATCAGCAGCAGC
TTCTCGGCCCCATGATGAAATCTATATCGACGATGATAGCATCGAGGGAT
CCGGCGGACGCGGCGGTATACACGAAGATCTAGAGAAAGATCCGGACTAT
TCTGGCTCCGGCTTTGGACCCGATGACGAGGACGCCGAACCCGATCAGCA
TTCGCACAGTTCGCACAACACGCGCATCTCGCAGAGCAGCAACTCCGGCA
TAAACACAGCTCATACACCAACACAAACCTCATCCACAATCCCAACAACA
TCGACTTCGACACCAATGCCGACAACAACCCCCACAGCGACAACCCCCGC
ATCCACCACAACGGCGGCAGCAACCCAGATATCGTCCTTTGCCAATAGCA
GTAGCACCACCACCACCACGTTGGCTCCCACGATTCCCGCAGAACCGCAG
CAACCGCTGTTCCCGCCATTCGACAAGGATCTGGATACGGAGTCCAGCGG
CGATGGCATCGATGCTGATGCTGAGGATGACGATGAGGACGATGGCGACG
ATAAGGACTATGACTATAACAAGGAGCTGGACAAAGAAATCGACATCGAT
GGTCCCGAGCCGGGACATCTGCCGCCAGTTGTCCATCATAATACCGTTGA
AACTGGTCACATACCCACTACGGATGAAATCGATGTGGATGGCGGCGATG
AGGATGACAATGGGGATAGCGACATCGATGGTCCGCGGATCGGTGGCAAC
GATGGAGATATTACAGAGCGCGGACCGGGTGCAGGTGGCAGCAACGTGCA
CGAATTGGACCCCAATACGAACGTGAATAGCCAGCCCTCCGACACAAAGG
GCATCGATCACAGGCCCAACGGCAACGAAGTGGTCATCATGAGCGAGGAC
GATCGCACGTCGAGCTTCTTCTCGCAGCCCGGAATTCTGGCTGCTGTCAT
TGGCGGTGCCGTCGTTGGCCTGCTCTGCGCCATACTCGTGGTCATGTTCA
TCGTGTACCGCATGAGGAAAAAGGACGAGGGATCCTATGCGCTGGACGAG
CCAAAGAGATCGCCGGCCAACAATTCGTATGCGAAAAATGCGAATAACCG
CGAGTTCTACGCCGCAAGCTTTCTAGACCAT
BO04437.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:36:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Sdc-RA | 1200 | CG10497-PA | 1..1197 | 17..1213 | 5985 | 100 | Plus |
Sdc-RD | 1197 | CG10497-PD | 1..1194 | 17..1213 | 5905 | 99.7 | Plus |
Sdc-RJ | 1488 | CG10497-PJ | 629..1485 | 357..1213 | 4285 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:36:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Sdc-RA | 2482 | CG10497-RA | 337..1533 | 17..1213 | 5985 | 100 | Plus |
Sdc-RD | 1869 | CG10497-RD | 337..1530 | 17..1213 | 5905 | 99.7 | Plus |
Sdc-RH | 2245 | CG10497-RH | 195..1296 | 109..1213 | 5445 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:36:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 21398065..21398583 | 875..357 | 2595 | 100 | Minus |
2R | 25286936 | 2R | 21394566..21394736 | 1213..1043 | 855 | 100 | Minus |
2R | 25286936 | 2R | 21394878..21395045 | 1043..876 | 840 | 100 | Minus |
2R | 25286936 | 2R | 21399175..21399313 | 356..218 | 695 | 100 | Minus |
2R | 25286936 | 2R | 21412311..21412421 | 217..107 | 555 | 100 | Minus |
2R | 25286936 | 2R | 21480091..21480183 | 109..17 | 465 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 08:36:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2374..2533 | 294..458 | 173 | 60.5 | Plus |
Dfun\Isfun-1 | 928 | Dfun\Isfun-1 DFU309320 928bp Derived from AJ309320 (Rel. 68, Last updated, Version 1). | 458..506 | 1210..1162 | 110 | 69.4 | Minus |
BO04437.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:40:52 Download gff for
BO04437.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sdc-RA | 1..1200 | 17..1216 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:59:36 Download gff for
BO04437.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sdc-RA | 329..1525 | 17..1215 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:23:45 Download gff for
BO04437.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sdc-RA | 337..1533 | 17..1215 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:40:52 Download gff for
BO04437.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sdc-RA | 329..1525 | 17..1213 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:21:22 Download gff for
BO04437.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sdc-RA | 337..1533 | 17..1215 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:21:22 Download gff for
BO04437.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 21394563..21394735 | 1044..1215 | 98 | <- | Minus |
2R | 21394878..21395045 | 876..1043 | 100 | <- | Minus |
2R | 21398065..21398583 | 357..875 | 100 | <- | Minus |
2R | 21399175..21399313 | 218..356 | 100 | <- | Minus |
2R | 21412311..21412418 | 110..217 | 100 | <- | Minus |
2R | 21480091..21480183 | 17..109 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:23:45 Download gff for
BO04437.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 17282068..17282240 | 1044..1215 | 98 | <- | Minus |
arm_2R | 17282383..17282550 | 876..1043 | 100 | <- | Minus |
arm_2R | 17285570..17286088 | 357..875 | 100 | <- | Minus |
arm_2R | 17286680..17286818 | 218..356 | 100 | <- | Minus |
arm_2R | 17299816..17299923 | 110..217 | 100 | <- | Minus |
arm_2R | 17367596..17367688 | 17..109 | 100 | | Minus |
BO04437.pep Sequence
Translation from 16 to 1231
> BO04437.pep
MKPKQKISVEPLLLVAILIGVLVAATHAQDQKSVKPSAAAPSAAASRPHD
EIYIDDDSIEGSGGRGGIHEDLEKDPDYSGSGFGPDDEDAEPDQHSHSSH
NTRISQSSNSGINTAHTPTQTSSTIPTTSTSTPMPTTTPTATTPASTTTA
AATQISSFANSSSTTTTTLAPTIPAEPQQPLFPPFDKDLDTESSGDGIDA
DAEDDDEDDGDDKDYDYNKELDKEIDIDGPEPGHLPPVVHHNTVETGHIP
TTDEIDVDGGDEDDNGDSDIDGPRIGGNDGDITERGPGAGGSNVHELDPN
TNVNSQPSDTKGIDHRPNGNEVVIMSEDDRTSSFFSQPGILAAVIGGAVV
GLLCAILVVMFIVYRMRKKDEGSYALDEPKRSPANNSYAKNANNREFYAA
SFLDH
BO04437.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:31:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Sdc-PA | 399 | CG10497-PA | 1..399 | 1..399 | 2096 | 100 | Plus |
Sdc-PD | 398 | CG10497-PD | 1..398 | 1..399 | 2080 | 99.7 | Plus |
Sdc-PI | 494 | CG10497-PI | 1..494 | 1..399 | 1553 | 67.4 | Plus |
Sdc-PJ | 495 | CG10497-PJ | 1..495 | 1..399 | 1535 | 66.3 | Plus |
Sdc-PH | 266 | CG10497-PH | 1..266 | 134..399 | 1411 | 100 | Plus |