Clone BO04438 Report

Search the DGRC for BO04438

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:44
Well:38
Vector:pDNR-Dual
Associated Gene/TranscriptMESR3-RA
Protein status:BO04438.pep: validated full length
Sequenced Size:877

Clone Sequence Records

BO04438.3prime Sequence

875 bp (766 high quality bases) assembled on 2005-12-01

> BO04438.3prime
ATGGTCTAGAAAGCTTGCACGATGCTGCTGGGGATTGGGGGGTCCGAAGG
CCTGCATGCTGTAGTACCGTTCGCTGTCCTCCTTGACCACACTGGTCACG
TGGTGGAATTGGCATGGATGCGAAATCTGGGACTTCGGTGGCAAGGGAGC
CGGCTTGACGCGCTTCTGTTTCTTCGGCTTGCGGGTTCCGGCCACGGTTA
GAGCCTCATTCTCTGGATTGCTGACCAAACGCTCCACGTGCTGCCACAAT
TCGCGTGCCGCATCCGTGGAATCGAAGCTGAAGCCAATCATCTGCTGATG
ATTGCTGGACCGGCACATCGTGTGGAACGAGGGACCCGCGATCCGATAGT
TCGACAGGTTATCAATCCGATCCGACCACAGGGCGAAGCAGGAGCCCCTC
TCCGCCAGAACCAGCGTCACTCTGGGTATGGCTCTGGCCTTGGAGTTTCC
CTTGTCGTGCAGTATCACCGGTATGCCGGTGAACACCAAACGCCAGTCGC
CATCGTTTCCGGTTCCCTCGTAGAGATTGGCCAAAGCGCCGCTCACGAAT
ATCTCTGTGCCCAATCCGCCGAAGAAACTCTCCACCTGACCACGTTCGTA
GTCCGATAGATTTGTGTTGCTCGTGGTGTCCGTGCTGATGGTATCCGCAT
CGATATCCGAGGCATTGTACAGCGATGTGGTTCCATGGGCGCTGCTCCTC
TGTGCCGACGAATGCGAGTGGGCCGACCAGTCCGGATGGAGAATCAGCTC
GTCCCGTGGCTCCAGGGAGGAGCCTGTGCCCTCACTGGACTCCGATGGTG
GCGCCGAATCGCTAACGGAGCCCAAACGGCGGCGTGTCTGCTGCAGTTGA
TGCGACATCATGTCGACTGATAACT

BO04438.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:05:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG15162-PA 846 MESR3-RA 1..843 861..19 4215 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 16:04:06
Subject Length Description Subject Range Query Range Score Percent Strand
MESR3-RC 2067 CG15162-RC 497..1339 861..19 4215 100 Minus
MESR3-RB 2099 CG15162-RB 529..1371 861..19 4215 100 Minus
MESR3-RA 2099 CG15162-RA 529..1371 861..19 4215 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 16:04:04
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 18660208..18661048 859..19 4205 100 Minus
Blast to na_te.dros performed on 2015-02-12 16:04:05 has no hits.

BO04438.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:02:55 Download gff for BO04438.3prime
Subject Subject Range Query Range Percent Splice Strand
MESR3-PA 1..846 16..861 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:16:01 Download gff for BO04438.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15162-PA 1..846 16..861 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:29:04 Download gff for BO04438.3prime
Subject Subject Range Query Range Percent Splice Strand
MESR3-RA 529..1371 19..861 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:39:33 Download gff for BO04438.3prime
Subject Subject Range Query Range Percent Splice Strand
MESR3-RA 529..1371 19..861 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:39:33 Download gff for BO04438.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 18660208..18661048 19..859 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:29:04 Download gff for BO04438.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 18660208..18661048 19..859 100   Minus

BO04438.5prime Sequence

796 bp (749 high quality bases) assembled on 2005-11-29

> BO04438.5prime
GAAGTTATCAGTCGACATGATGTCGCATCAACTGCAGCAGACACGCCGCC
GTTTGGGCTCCGTTAGCGATTCGGCGCCACCATCGGAGTCCAGTGAGGGC
ACAGGCTCCTCCCTGGAGCCACGGGACGAGCTGATTCTCCATCCGGACTG
GTCGGCCCACTCGCATTCGTCGGCACAGAGGAGCAGCGCCCATGGAACCA
CATCGCTGTACAATGCCTCGGATATCGATGCGGATACCATCAGCACGGAC
ACCACGAGCAACACAAATCTATCGGACTACGAACGTGGTCAGGTGGAGAG
TTTCTTCGGCGGATTGGGCACAGAGATATTCGTGAGCGGCGCTTTGGCCA
ATCTCTACGAGGGAACCGGAAACGATGGCGACTGGCGTTTGGTGTTCACC
GGCATACCGGTGATACTGCACGACAAGGGAAACTCCAAGGCCAGAGCCAT
ACCCAGAGTGACGCTGGTTCTGGCGGAGAGGGGCTCCTGCTTCGCCCTGT
GGTCGGATCGGATTGATAACCTGTCGAACTATCGGATCGCGGGTCCCTCG
TTCCACACGATGTGCCGGTCCAGCAATCATCAGCAGATGATTGGCTTCAG
CTTCGATTCCACGGATGCGGCACGCGAATTGTGGCAGCACGTGGAGCGTT
TGGTCAGCAATCCAGAGAATGAGGCTCTAACCGTGGCCGGAACCCGCAAG
CCGAAGAAACAGAAGCGCGTCAAGCCGGCTCCCTTGCCACCGAAGTCCCA
GATTTCGCATCCATGCCAATTCCACCACGTGACCAGTGTGGTCAAG

BO04438.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:05:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG15162-PA 846 MESR3-RA 1..780 17..796 3900 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:07:02
Subject Length Description Subject Range Query Range Score Percent Strand
MESR3-RC 2067 CG15162-RC 497..1276 17..796 3900 100 Plus
MESR3-RB 2099 CG15162-RB 529..1308 17..796 3900 100 Plus
MESR3-RA 2099 CG15162-RA 529..1308 17..796 3900 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:06:58
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 18660208..18660985 19..796 3890 100 Plus
Blast to na_te.dros performed on 2015-02-12 10:07:00 has no hits.

BO04438.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:02:56 Download gff for BO04438.5prime
Subject Subject Range Query Range Percent Splice Strand
MESR3-PA 1..780 17..796 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:16:03 Download gff for BO04438.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15162-PA 1..780 17..796 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:52:55 Download gff for BO04438.5prime
Subject Subject Range Query Range Percent Splice Strand
MESR3-RA 529..1308 17..796 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:04:59 Download gff for BO04438.5prime
Subject Subject Range Query Range Percent Splice Strand
MESR3-RA 529..1308 17..796 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:04:59 Download gff for BO04438.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 18660208..18660985 19..796 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:52:55 Download gff for BO04438.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 18660208..18660985 19..796 100   Plus

BO04438.complete Sequence

877 bp (877 high quality bases) assembled on 2005-09-08

GenBank Submission: FJ629762

> BO04438.complete
GAAGTTATCAGTCGACATGATGTCGCATCAACTGCAGCAGACACGCCGCC
GTTTGGGCTCCGTTAGCGATTCGGCGCCACCATCGGAGTCCAGTGAGGGC
ACAGGCTCCTCCCTGGAGCCACGGGACGAGCTGATTCTCCATCCGGACTG
GTCGGCCCACTCGCATTCGTCGGCACAGAGGAGCAGCGCCCATGGAACCA
CATCGCTGTACAATGCCTCGGATATCGATGCGGATACCATCAGCACGGAC
ACCACGAGCAACACAAATCTATCGGACTACGAACGTGGTCAGGTGGAGAG
TTTCTTCGGCGGATTGGGCACAGAGATATTCGTGAGCGGCGCTTTGGCCA
ATCTCTACGAGGGAACCGGAAACGATGGCGACTGGCGTTTGGTGTTCACC
GGCATACCGGTGATACTGCACGACAAGGGAAACTCCAAGGCCAGAGCCAT
ACCCAGAGTGACGCTGGTTCTGGCGGAGAGGGGCTCCTGCTTCGCCCTGT
GGTCGGATCGGATTGATAACCTGTCGAACTATCGGATCGCGGGTCCCTCG
TTCCACACGATGTGCCGGTCCAGCAATCATCAGCAGATGATTGGCTTCAG
CTTCGATTCCACGGATGCGGCACGCGAATTGTGGCAGCACGTGGAGCGTT
TGGTCAGCAATCCAGAGAATGAGGCTCTAACCGTGGCCGGAACCCGCAAG
CCGAAGAAACAGAAGCGCGTCAAGCCGGCTCCCTTGCCACCGAAGTCCCA
GATTTCGCATCCATGCCAATTCCACCACGTGACCAGTGTGGTCAAGGAGG
ACAGCGAACGGTACTACAGCATGCAGGCCTTCGGACCCCCCAATCCCCAG
CAGCATCGTGCAAGCTTTCTAGACCAT

BO04438.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:56:36
Subject Length Description Subject Range Query Range Score Percent Strand
MESR3-RC 846 CG15162-PC 1..843 17..859 4215 100 Plus
MESR3-RB 900 CG15162-PB 1..843 17..859 4215 100 Plus
MESR3-RA 846 CG15162-PA 1..843 17..859 4215 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:56:38
Subject Length Description Subject Range Query Range Score Percent Strand
MESR3-RC 2067 CG15162-RC 497..1339 17..859 4215 100 Plus
MESR3-RB 2099 CG15162-RB 529..1371 17..859 4215 100 Plus
MESR3-RA 2099 CG15162-RA 529..1371 17..859 4215 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:56:34
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 18660208..18661048 19..859 4205 100 Plus
Blast to na_te.dros performed on 2014-11-28 00:56:35 has no hits.

BO04438.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:40:53 Download gff for BO04438.complete
Subject Subject Range Query Range Percent Splice Strand
MESR3-RA 1..846 17..862 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:10:26 Download gff for BO04438.complete
Subject Subject Range Query Range Percent Splice Strand
MESR3-RA 528..1370 17..859 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:02:55 Download gff for BO04438.complete
Subject Subject Range Query Range Percent Splice Strand
MESR3-RA 529..1371 17..861 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:40:53 Download gff for BO04438.complete
Subject Subject Range Query Range Percent Splice Strand
MESR3-RA 528..1370 17..859 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:29:36 Download gff for BO04438.complete
Subject Subject Range Query Range Percent Splice Strand
MESR3-RA 529..1371 17..861 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:29:36 Download gff for BO04438.complete
Subject Subject Range Query Range Percent Splice Strand
2L 18660207..18661048 17..861 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:02:55 Download gff for BO04438.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 18660207..18661048 17..861 99   Plus

BO04438.pep Sequence

Translation from 16 to 877

> BO04438.pep
MMSHQLQQTRRRLGSVSDSAPPSESSEGTGSSLEPRDELILHPDWSAHSH
SSAQRSSAHGTTSLYNASDIDADTISTDTTSNTNLSDYERGQVESFFGGL
GTEIFVSGALANLYEGTGNDGDWRLVFTGIPVILHDKGNSKARAIPRVTL
VLAERGSCFALWSDRIDNLSNYRIAGPSFHTMCRSSNHQQMIGFSFDSTD
AARELWQHVERLVSNPENEALTVAGTRKPKKQKRVKPAPLPPKSQISHPC
QFHHVTSVVKEDSERYYSMQAFGPPNPQQHRASFLDH

BO04438.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:31:29
Subject Length Description Subject Range Query Range Score Percent Strand
MESR3-PC 281 CG15162-PC 1..281 1..281 1482 100 Plus
MESR3-PA 281 CG15162-PA 1..281 1..281 1482 100 Plus
MESR3-PB 299 CG15162-PB 1..281 1..281 1482 100 Plus
MESR3-PD 280 CG15162-PD 1..280 2..281 1477 100 Plus