Clone Sequence Records
BO04438.3prime Sequence
875 bp (766 high quality bases) assembled on 2005-12-01
> BO04438.3prime
ATGGTCTAGAAAGCTTGCACGATGCTGCTGGGGATTGGGGGGTCCGAAGG
CCTGCATGCTGTAGTACCGTTCGCTGTCCTCCTTGACCACACTGGTCACG
TGGTGGAATTGGCATGGATGCGAAATCTGGGACTTCGGTGGCAAGGGAGC
CGGCTTGACGCGCTTCTGTTTCTTCGGCTTGCGGGTTCCGGCCACGGTTA
GAGCCTCATTCTCTGGATTGCTGACCAAACGCTCCACGTGCTGCCACAAT
TCGCGTGCCGCATCCGTGGAATCGAAGCTGAAGCCAATCATCTGCTGATG
ATTGCTGGACCGGCACATCGTGTGGAACGAGGGACCCGCGATCCGATAGT
TCGACAGGTTATCAATCCGATCCGACCACAGGGCGAAGCAGGAGCCCCTC
TCCGCCAGAACCAGCGTCACTCTGGGTATGGCTCTGGCCTTGGAGTTTCC
CTTGTCGTGCAGTATCACCGGTATGCCGGTGAACACCAAACGCCAGTCGC
CATCGTTTCCGGTTCCCTCGTAGAGATTGGCCAAAGCGCCGCTCACGAAT
ATCTCTGTGCCCAATCCGCCGAAGAAACTCTCCACCTGACCACGTTCGTA
GTCCGATAGATTTGTGTTGCTCGTGGTGTCCGTGCTGATGGTATCCGCAT
CGATATCCGAGGCATTGTACAGCGATGTGGTTCCATGGGCGCTGCTCCTC
TGTGCCGACGAATGCGAGTGGGCCGACCAGTCCGGATGGAGAATCAGCTC
GTCCCGTGGCTCCAGGGAGGAGCCTGTGCCCTCACTGGACTCCGATGGTG
GCGCCGAATCGCTAACGGAGCCCAAACGGCGGCGTGTCTGCTGCAGTTGA
TGCGACATCATGTCGACTGATAACT
BO04438.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:05:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15162-PA | 846 | MESR3-RA | 1..843 | 861..19 | 4215 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 16:04:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
MESR3-RC | 2067 | CG15162-RC | 497..1339 | 861..19 | 4215 | 100 | Minus |
MESR3-RB | 2099 | CG15162-RB | 529..1371 | 861..19 | 4215 | 100 | Minus |
MESR3-RA | 2099 | CG15162-RA | 529..1371 | 861..19 | 4215 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 16:04:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 18660208..18661048 | 859..19 | 4205 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 16:04:05 has no hits.
BO04438.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:02:55 Download gff for
BO04438.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MESR3-PA | 1..846 | 16..861 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:16:01 Download gff for
BO04438.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15162-PA | 1..846 | 16..861 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:29:04 Download gff for
BO04438.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MESR3-RA | 529..1371 | 19..861 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:39:33 Download gff for
BO04438.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MESR3-RA | 529..1371 | 19..861 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:39:33 Download gff for
BO04438.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 18660208..18661048 | 19..859 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:29:04 Download gff for
BO04438.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 18660208..18661048 | 19..859 | 100 | | Minus |
BO04438.5prime Sequence
796 bp (749 high quality bases) assembled on 2005-11-29
> BO04438.5prime
GAAGTTATCAGTCGACATGATGTCGCATCAACTGCAGCAGACACGCCGCC
GTTTGGGCTCCGTTAGCGATTCGGCGCCACCATCGGAGTCCAGTGAGGGC
ACAGGCTCCTCCCTGGAGCCACGGGACGAGCTGATTCTCCATCCGGACTG
GTCGGCCCACTCGCATTCGTCGGCACAGAGGAGCAGCGCCCATGGAACCA
CATCGCTGTACAATGCCTCGGATATCGATGCGGATACCATCAGCACGGAC
ACCACGAGCAACACAAATCTATCGGACTACGAACGTGGTCAGGTGGAGAG
TTTCTTCGGCGGATTGGGCACAGAGATATTCGTGAGCGGCGCTTTGGCCA
ATCTCTACGAGGGAACCGGAAACGATGGCGACTGGCGTTTGGTGTTCACC
GGCATACCGGTGATACTGCACGACAAGGGAAACTCCAAGGCCAGAGCCAT
ACCCAGAGTGACGCTGGTTCTGGCGGAGAGGGGCTCCTGCTTCGCCCTGT
GGTCGGATCGGATTGATAACCTGTCGAACTATCGGATCGCGGGTCCCTCG
TTCCACACGATGTGCCGGTCCAGCAATCATCAGCAGATGATTGGCTTCAG
CTTCGATTCCACGGATGCGGCACGCGAATTGTGGCAGCACGTGGAGCGTT
TGGTCAGCAATCCAGAGAATGAGGCTCTAACCGTGGCCGGAACCCGCAAG
CCGAAGAAACAGAAGCGCGTCAAGCCGGCTCCCTTGCCACCGAAGTCCCA
GATTTCGCATCCATGCCAATTCCACCACGTGACCAGTGTGGTCAAG
BO04438.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:05:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15162-PA | 846 | MESR3-RA | 1..780 | 17..796 | 3900 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:07:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
MESR3-RC | 2067 | CG15162-RC | 497..1276 | 17..796 | 3900 | 100 | Plus |
MESR3-RB | 2099 | CG15162-RB | 529..1308 | 17..796 | 3900 | 100 | Plus |
MESR3-RA | 2099 | CG15162-RA | 529..1308 | 17..796 | 3900 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:06:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 18660208..18660985 | 19..796 | 3890 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 10:07:00 has no hits.
BO04438.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:02:56 Download gff for
BO04438.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MESR3-PA | 1..780 | 17..796 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:16:03 Download gff for
BO04438.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15162-PA | 1..780 | 17..796 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:52:55 Download gff for
BO04438.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MESR3-RA | 529..1308 | 17..796 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:04:59 Download gff for
BO04438.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MESR3-RA | 529..1308 | 17..796 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:04:59 Download gff for
BO04438.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 18660208..18660985 | 19..796 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:52:55 Download gff for
BO04438.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 18660208..18660985 | 19..796 | 100 | | Plus |
BO04438.complete Sequence
877 bp (877 high quality bases) assembled on 2005-09-08
GenBank Submission: FJ629762
> BO04438.complete
GAAGTTATCAGTCGACATGATGTCGCATCAACTGCAGCAGACACGCCGCC
GTTTGGGCTCCGTTAGCGATTCGGCGCCACCATCGGAGTCCAGTGAGGGC
ACAGGCTCCTCCCTGGAGCCACGGGACGAGCTGATTCTCCATCCGGACTG
GTCGGCCCACTCGCATTCGTCGGCACAGAGGAGCAGCGCCCATGGAACCA
CATCGCTGTACAATGCCTCGGATATCGATGCGGATACCATCAGCACGGAC
ACCACGAGCAACACAAATCTATCGGACTACGAACGTGGTCAGGTGGAGAG
TTTCTTCGGCGGATTGGGCACAGAGATATTCGTGAGCGGCGCTTTGGCCA
ATCTCTACGAGGGAACCGGAAACGATGGCGACTGGCGTTTGGTGTTCACC
GGCATACCGGTGATACTGCACGACAAGGGAAACTCCAAGGCCAGAGCCAT
ACCCAGAGTGACGCTGGTTCTGGCGGAGAGGGGCTCCTGCTTCGCCCTGT
GGTCGGATCGGATTGATAACCTGTCGAACTATCGGATCGCGGGTCCCTCG
TTCCACACGATGTGCCGGTCCAGCAATCATCAGCAGATGATTGGCTTCAG
CTTCGATTCCACGGATGCGGCACGCGAATTGTGGCAGCACGTGGAGCGTT
TGGTCAGCAATCCAGAGAATGAGGCTCTAACCGTGGCCGGAACCCGCAAG
CCGAAGAAACAGAAGCGCGTCAAGCCGGCTCCCTTGCCACCGAAGTCCCA
GATTTCGCATCCATGCCAATTCCACCACGTGACCAGTGTGGTCAAGGAGG
ACAGCGAACGGTACTACAGCATGCAGGCCTTCGGACCCCCCAATCCCCAG
CAGCATCGTGCAAGCTTTCTAGACCAT
BO04438.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:56:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
MESR3-RC | 846 | CG15162-PC | 1..843 | 17..859 | 4215 | 100 | Plus |
MESR3-RB | 900 | CG15162-PB | 1..843 | 17..859 | 4215 | 100 | Plus |
MESR3-RA | 846 | CG15162-PA | 1..843 | 17..859 | 4215 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:56:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
MESR3-RC | 2067 | CG15162-RC | 497..1339 | 17..859 | 4215 | 100 | Plus |
MESR3-RB | 2099 | CG15162-RB | 529..1371 | 17..859 | 4215 | 100 | Plus |
MESR3-RA | 2099 | CG15162-RA | 529..1371 | 17..859 | 4215 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:56:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 18660208..18661048 | 19..859 | 4205 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:56:35 has no hits.
BO04438.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:40:53 Download gff for
BO04438.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MESR3-RA | 1..846 | 17..862 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:10:26 Download gff for
BO04438.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MESR3-RA | 528..1370 | 17..859 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:02:55 Download gff for
BO04438.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MESR3-RA | 529..1371 | 17..861 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:40:53 Download gff for
BO04438.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MESR3-RA | 528..1370 | 17..859 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:29:36 Download gff for
BO04438.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MESR3-RA | 529..1371 | 17..861 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:29:36 Download gff for
BO04438.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 18660207..18661048 | 17..861 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:02:55 Download gff for
BO04438.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 18660207..18661048 | 17..861 | 99 | | Plus |
BO04438.pep Sequence
Translation from 16 to 877
> BO04438.pep
MMSHQLQQTRRRLGSVSDSAPPSESSEGTGSSLEPRDELILHPDWSAHSH
SSAQRSSAHGTTSLYNASDIDADTISTDTTSNTNLSDYERGQVESFFGGL
GTEIFVSGALANLYEGTGNDGDWRLVFTGIPVILHDKGNSKARAIPRVTL
VLAERGSCFALWSDRIDNLSNYRIAGPSFHTMCRSSNHQQMIGFSFDSTD
AARELWQHVERLVSNPENEALTVAGTRKPKKQKRVKPAPLPPKSQISHPC
QFHHVTSVVKEDSERYYSMQAFGPPNPQQHRASFLDH
BO04438.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:31:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
MESR3-PC | 281 | CG15162-PC | 1..281 | 1..281 | 1482 | 100 | Plus |
MESR3-PA | 281 | CG15162-PA | 1..281 | 1..281 | 1482 | 100 | Plus |
MESR3-PB | 299 | CG15162-PB | 1..281 | 1..281 | 1482 | 100 | Plus |
MESR3-PD | 280 | CG15162-PD | 1..280 | 2..281 | 1477 | 100 | Plus |