Clone BO04440 Report

Search the DGRC for BO04440

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:44
Well:40
Vector:pDNR-Dual
Associated Gene/Transcriptnuf-RB
Protein status:BO04440.pep: validated not full length
Sequenced Size:949

Clone Sequence Records

BO04440.3prime Sequence

799 bp (721 high quality bases) assembled on 2005-12-01

> BO04440.3prime
ATGGTCTAGAAAGCTTGCCTTTCGCTCCATGGGCTTGACTTCCAGCAATT
GAGGATAGTTCTCCACGATGTTGAGTAGAATGGTATCAATATAGTGCTTA
AGCCGAACATTTTCATCCTCCTTTTCCTGGAAGGCCTGTTGTAGCTGGGC
TTGTGACATCTCCTCGAGCTCCTGAGCCAAACTGTTGAGTGTTCCGTTCA
GCAGATGGCGACCCTGCTCCACGCCATTTGTCAGCATGGTGGCCTGGTTG
GTCAGCATCGTGGCCTGCAGCTCCTCGTTCTGTTCTTCGAGGGTTCGGTT
CTTCTGGCGCATCTCCTCGAGCTCCTGATGCAGCTCCTCCAGTCTTATGC
TCTCCGGCGATGTGGTCGGCATTGCCCGGGCTCCACTCTCCTCGCGAGCA
CGCTGCAGTTCCCGGCCCAGCTCCAGCATCAGCTCCTCGGTGGACTTCTT
CTCCTGTTCGTGGCGGCGCAGTGCCTGTGCCTGCTCCTCGTGCTCCTGTT
GCAGGACGCCGATTTGGTCGCGCGCCAGCTCCAACTGTTCCTCGGTGCGA
TGGAGGTCATTGGCCTGCTTGTCACACAGGACACGCAGTCGGGCGGCTTC
TTCCCGCAGTGCCGTTGCCTCGATCTCGGTGGCACGGATCTTCATCTGGC
AGTTCTCGTTCTGCAGCGAGGCTTCACGCTCCACGCGGGCCAAAATCTCG
CGGTGCCGCTTCTGCTCCTCTGCCNAACGCTCCTCGGCACGCAGTTCCGA
CTCTCGGTACTGCTCTTCGAGCATGTGATAACGCGCCTGAAGGACTGCA

BO04440.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:05:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG33991-PC 1509 nuf-RC 726..1506 799..19 3886 99.8 Minus
CG33991-PA 1509 nuf-RA 726..1506 799..19 3886 99.8 Minus
CG33991-PD 951 nuf-RD 168..948 799..19 3886 99.8 Minus
CG33991-PB 918 nuf-RB 135..915 799..19 3886 99.8 Minus
CG33991-PE 1587 nuf-RE 804..1584 799..19 3886 99.8 Minus
CG33991-PF 1587 nuf-RF 804..1584 799..19 3886 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:45:01
Subject Length Description Subject Range Query Range Score Percent Strand
nuf-RF 3099 CG33991-RF 1121..1901 799..19 3894 99.9 Minus
nuf-RE 3233 CG33991-RE 1255..2035 799..19 3894 99.9 Minus
nuf-RB 2373 CG33991-RB 395..1175 799..19 3894 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:44:58
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 14230654..14231112 752..294 2284 99.8 Minus
3L 28110227 3L 14231177..14231325 293..145 745 100 Minus
3L 28110227 3L 14231924..14232052 147..19 645 100 Minus
3L 28110227 3L 14230262..14230310 799..751 245 100 Minus
Blast to na_te.dros performed on 2015-02-11 04:44:59 has no hits.

BO04440.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:02:57 Download gff for BO04440.3prime
Subject Subject Range Query Range Percent Splice Strand
CG33991-PD 169..951 18..798 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:16:04 Download gff for BO04440.3prime
Subject Subject Range Query Range Percent Splice Strand
CG33991-PF 805..1587 18..798 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:12:54 Download gff for BO04440.3prime
Subject Subject Range Query Range Percent Splice Strand
nuf-RB 396..1175 19..798 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:24:54 Download gff for BO04440.3prime
Subject Subject Range Query Range Percent Splice Strand
nuf-RB 396..1175 19..798 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 09:24:54 Download gff for BO04440.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 14231927..14232052 19..144 100   Minus
3L 14230263..14230310 751..798 100 -> Minus
3L 14230656..14231112 294..750 99 -> Minus
3L 14231177..14231325 145..293 100 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:12:54 Download gff for BO04440.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 14223363..14223410 751..798 100 -> Minus
arm_3L 14223756..14224212 294..750 99 -> Minus
arm_3L 14224277..14224425 145..293 100 -> Minus
arm_3L 14225027..14225152 19..144 100   Minus

BO04440.5prime Sequence

697 bp (645 high quality bases) assembled on 2005-11-29

> BO04440.5prime
GAAGTTATCAGTCGACATGTACAGCGACATAAGCTTGGAGAATCGTCATG
ACTACGATTATAGGCTGGAACTGCTGCAGCGCAAGGTGGACGATCTGTCA
GATACACAGAATATAGCTGAGGATCGGACAACCCGCACCAAGACCGAATA
TGCAGTCCTTCAGGCGCGTTATCACATGCTCGAAGAGCAGTACCGAGAGT
CGGAACTGCGTGCCGAGGAGCGTTTGGCAGAGGAGCAGAAGCGGCACCGC
GAGATTTTGGCCCGCGTGGAGCGTGAAGCCTCGCTGCAGAACGAGAACTG
CCAGATGAAGATCCGTGCCACCGAGATCGAGGCAACGGCACTGCGGGAAG
AAGCCGCCCGACTGCGTGTCCTGTGTGACAAGCAGGCCAATGACCTCCAT
CGCACCGAGGAACAGTTGGAGCTGGCGCGCGACCAAATCGGCGTCCTGCA
ACAGGAGCACGAGGAGCAGGCACAGGCACTGCGCCGCCACGAACAGGAGA
AGAAGTCCACCGAGGAGCTGATGCTGGAGCTGGGCCGGGAACTGCAGCGT
GCTCGCGAGGAGAGTGGAGCCCGGGCAATGCCGACCACATCGCCGGAGAG
CATAAGACTGGAGGAGCTGCATCAGGAGCTCGAGGAGATGCGCCAGAAGA
ACCGAACCCTCGAAGAACAGAACGAGGAGCTGCAGGCCACGATGCTG

BO04440.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:05:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG33991-PC 1509 nuf-RC 589..1272 14..697 3420 100 Plus
CG33991-PA 1509 nuf-RA 589..1272 14..697 3420 100 Plus
CG33991-PB 918 nuf-RB 1..681 17..697 3405 100 Plus
CG33991-PD 951 nuf-RD 82..714 65..697 3165 100 Plus
CG33991-PE 1587 nuf-RE 718..1350 65..697 3165 100 Plus
CG33991-PF 1587 nuf-RF 718..1350 65..697 3165 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 02:26:59
Subject Length Description Subject Range Query Range Score Percent Strand
nuf-RL 2735 CG33991-RL 1331..2014 14..697 3420 100 Plus
nuf-RH 3530 CG33991-RH 1376..2059 14..697 3420 100 Plus
nuf-RG 3533 CG33991-RG 1379..2062 14..697 3420 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 02:26:57
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 14230654..14231112 198..656 2295 100 Plus
3L 28110227 3L 14230175..14230310 64..199 680 100 Plus
3L 28110227 3L 14213153..14213203 14..64 255 100 Plus
3L 28110227 3L 14231177..14231217 657..697 205 100 Plus
Blast to na_te.dros performed on 2015-02-11 02:26:58 has no hits.

BO04440.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:02:58 Download gff for BO04440.5prime
Subject Subject Range Query Range Percent Splice Strand
CG33991-PC 584..1272 9..697 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:16:05 Download gff for BO04440.5prime
Subject Subject Range Query Range Percent Splice Strand
CG33991-PA 584..1272 9..697 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 20:47:41 Download gff for BO04440.5prime
Subject Subject Range Query Range Percent Splice Strand
nuf-RG 1374..2062 9..697 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:20:18 Download gff for BO04440.5prime
Subject Subject Range Query Range Percent Splice Strand
nuf-RG 1374..2062 9..697 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:20:18 Download gff for BO04440.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 14213148..14213203 9..64 96 -> Plus
3L 14230176..14230310 65..199 100 -> Plus
3L 14230656..14231112 200..656 100 -> Plus
3L 14231177..14231217 657..697 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 20:47:41 Download gff for BO04440.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 14206248..14206303 9..64 96 -> Plus
arm_3L 14223276..14223410 65..199 100 -> Plus
arm_3L 14223756..14224212 200..656 100 -> Plus
arm_3L 14224277..14224317 657..697 100   Plus

BO04440.complete Sequence

949 bp (949 high quality bases) assembled on 2005-10-17

GenBank Submission: FJ629763

> BO04440.complete
GAAGTTATCAGTCGACATGTACAGCGACATAAGCTTGGAGAATCGTCATG
ACTACGATTATAGGCTGGAACTGCTGCAGCGCAAGGTGGACGATCTGTCA
GATACACAGAATATAGCTGAGGATCGGACAACCCGCACCAAGACCGAATA
TGCAGTCCTTCAGGCGCGTTATCACATGCTCGAAGAGCAGTACCGAGAGT
CGGAACTGCGTGCCGAGGAGCGTTTGGCAGAGGAGCAGAAGCGGCACCGC
GAGATTTTGGCCCGCGTGGAGCGTGAAGCCTCGCTGCAGAACGAGAACTG
CCAGATGAAGATCCGTGCCACCGAGATCGAGGCAACGGCACTGCGGGAAG
AAGCCGCCCGACTGCGTGTCCTGTGTGACAAGCAGGCCAATGACCTCCAT
CGCACCGAGGAACAGTTGGAGCTGGCGCGCGACCAAATCGGCGTCCTGCA
ACAGGAGCACGAGGAGCAGGCACAGGCACTGCGCCGCCACGAACAGGAGA
AGAAGTCCACCGAGGAGCTGATGCTGGAGCTGGGCCGGGAACTGCAGCGT
GCTCGCGAGGAGAGTGGAGCCCGGGCAATGCCGACCACATCGCCGGAGAG
CATAAGACTGGAGGAGCTGCATCAGGAGCTCGAGGAGATGCGCCAGAAGA
ACCGAACCCTCGAAGAACAGAACGAGGAGCTGCAGGCCACGATGCTGACC
AACCAGGCCACCATGCTGACAAATGGCGTGGAGCAGGGTCGCCATCTGCT
GAACGGAACACTCAACAGTTTGGCTCAGGAGCTCGAGGAGATGTCACAAG
CCCAGCTACAACAGGCCTTCCAGGAAAAGGAGGATGAAAATGTTCGGCTT
AAGCACTATATTGATACCATTCTACTCAACATCGTGGAGAACTATCCTCA
ATTGCTGGAAGTCAAGCCCATGGAGCGAAAGGCAAGCTTTCTAGACCAT

BO04440.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:35:17
Subject Length Description Subject Range Query Range Score Percent Strand
nuf-RA 1509 CG33991-PA 589..1506 14..931 4590 100 Plus
nuf-RC 1509 CG33991-PC 589..1506 14..931 4590 100 Plus
nuf-RB 918 CG33991-PB 1..915 17..931 4575 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:35:18
Subject Length Description Subject Range Query Range Score Percent Strand
nuf-RB 2373 CG33991-RB 258..1175 14..931 4590 100 Plus
nuf-RA 2696 CG33991-RA 1331..2248 14..931 4590 100 Plus
nuf-RC 3446 CG33991-RC 1331..2248 14..931 4590 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:35:15
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 14230654..14231112 198..656 2295 100 Plus
3L 28110227 3L 14231177..14231325 657..805 745 100 Plus
3L 28110227 3L 14230175..14230310 64..199 680 100 Plus
3L 28110227 3L 14231924..14232052 803..931 645 100 Plus
3L 28110227 3L 14213153..14213203 14..64 255 100 Plus
Blast to na_te.dros performed on 2014-11-28 08:35:16 has no hits.

BO04440.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:31:57 Download gff for BO04440.complete
Subject Subject Range Query Range Percent Splice Strand
nuf-RA 584..1509 9..932 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:57:54 Download gff for BO04440.complete
Subject Subject Range Query Range Percent Splice Strand
nuf-RB 261..1175 17..933 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:23:17 Download gff for BO04440.complete
Subject Subject Range Query Range Percent Splice Strand
nuf-RC 1334..2248 17..933 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:31:58 Download gff for BO04440.complete
Subject Subject Range Query Range Percent Splice Strand
nuf-RB 253..1175 9..931 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:21:05 Download gff for BO04440.complete
Subject Subject Range Query Range Percent Splice Strand
nuf-RC 1334..2248 17..933 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:21:05 Download gff for BO04440.complete
Subject Subject Range Query Range Percent Splice Strand
3L 14213156..14213203 17..64 100 -> Plus
3L 14230176..14230310 65..199 100 -> Plus
3L 14230656..14231112 200..656 100 -> Plus
3L 14231177..14231325 657..805 100 -> Plus
3L 14231927..14232052 806..933 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:23:17 Download gff for BO04440.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 14206256..14206303 17..64 100 -> Plus
arm_3L 14223276..14223410 65..199 100 -> Plus
arm_3L 14223756..14224212 200..656 100 -> Plus
arm_3L 14224277..14224425 657..805 100 -> Plus
arm_3L 14225027..14225152 806..933 98   Plus

BO04440.pep Sequence

Translation from 16 to 949

> BO04440.pep
MYSDISLENRHDYDYRLELLQRKVDDLSDTQNIAEDRTTRTKTEYAVLQA
RYHMLEEQYRESELRAEERLAEEQKRHREILARVEREASLQNENCQMKIR
ATEIEATALREEAARLRVLCDKQANDLHRTEEQLELARDQIGVLQQEHEE
QAQALRRHEQEKKSTEELMLELGRELQRAREESGARAMPTTSPESIRLEE
LHQELEEMRQKNRTLEEQNEELQATMLTNQATMLTNGVEQGRHLLNGTLN
SLAQELEEMSQAQLQQAFQEKEDENVRLKHYIDTILLNIVENYPQLLEVK
PMERKASFLDH

BO04440.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:42:53
Subject Length Description Subject Range Query Range Score Percent Strand
nuf-PB 305 CG33991-PB 1..305 1..305 1522 100 Plus
nuf-PA 502 CG33991-PA 198..502 1..305 1522 100 Plus
nuf-PC 502 CG33991-PC 198..502 1..305 1522 100 Plus
nuf-PM 318 CG33991-PM 1..318 1..305 1498 95.9 Plus
nuf-PL 515 CG33991-PL 198..515 1..305 1498 95.9 Plus