Clone Sequence Records
BO04440.3prime Sequence
799 bp (721 high quality bases) assembled on 2005-12-01
> BO04440.3prime
ATGGTCTAGAAAGCTTGCCTTTCGCTCCATGGGCTTGACTTCCAGCAATT
GAGGATAGTTCTCCACGATGTTGAGTAGAATGGTATCAATATAGTGCTTA
AGCCGAACATTTTCATCCTCCTTTTCCTGGAAGGCCTGTTGTAGCTGGGC
TTGTGACATCTCCTCGAGCTCCTGAGCCAAACTGTTGAGTGTTCCGTTCA
GCAGATGGCGACCCTGCTCCACGCCATTTGTCAGCATGGTGGCCTGGTTG
GTCAGCATCGTGGCCTGCAGCTCCTCGTTCTGTTCTTCGAGGGTTCGGTT
CTTCTGGCGCATCTCCTCGAGCTCCTGATGCAGCTCCTCCAGTCTTATGC
TCTCCGGCGATGTGGTCGGCATTGCCCGGGCTCCACTCTCCTCGCGAGCA
CGCTGCAGTTCCCGGCCCAGCTCCAGCATCAGCTCCTCGGTGGACTTCTT
CTCCTGTTCGTGGCGGCGCAGTGCCTGTGCCTGCTCCTCGTGCTCCTGTT
GCAGGACGCCGATTTGGTCGCGCGCCAGCTCCAACTGTTCCTCGGTGCGA
TGGAGGTCATTGGCCTGCTTGTCACACAGGACACGCAGTCGGGCGGCTTC
TTCCCGCAGTGCCGTTGCCTCGATCTCGGTGGCACGGATCTTCATCTGGC
AGTTCTCGTTCTGCAGCGAGGCTTCACGCTCCACGCGGGCCAAAATCTCG
CGGTGCCGCTTCTGCTCCTCTGCCNAACGCTCCTCGGCACGCAGTTCCGA
CTCTCGGTACTGCTCTTCGAGCATGTGATAACGCGCCTGAAGGACTGCA
BO04440.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:05:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33991-PC | 1509 | nuf-RC | 726..1506 | 799..19 | 3886 | 99.8 | Minus |
CG33991-PA | 1509 | nuf-RA | 726..1506 | 799..19 | 3886 | 99.8 | Minus |
CG33991-PD | 951 | nuf-RD | 168..948 | 799..19 | 3886 | 99.8 | Minus |
CG33991-PB | 918 | nuf-RB | 135..915 | 799..19 | 3886 | 99.8 | Minus |
CG33991-PE | 1587 | nuf-RE | 804..1584 | 799..19 | 3886 | 99.8 | Minus |
CG33991-PF | 1587 | nuf-RF | 804..1584 | 799..19 | 3886 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:45:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
nuf-RF | 3099 | CG33991-RF | 1121..1901 | 799..19 | 3894 | 99.9 | Minus |
nuf-RE | 3233 | CG33991-RE | 1255..2035 | 799..19 | 3894 | 99.9 | Minus |
nuf-RB | 2373 | CG33991-RB | 395..1175 | 799..19 | 3894 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:44:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 14230654..14231112 | 752..294 | 2284 | 99.8 | Minus |
3L | 28110227 | 3L | 14231177..14231325 | 293..145 | 745 | 100 | Minus |
3L | 28110227 | 3L | 14231924..14232052 | 147..19 | 645 | 100 | Minus |
3L | 28110227 | 3L | 14230262..14230310 | 799..751 | 245 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 04:44:59 has no hits.
BO04440.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:02:57 Download gff for
BO04440.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33991-PD | 169..951 | 18..798 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:16:04 Download gff for
BO04440.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33991-PF | 805..1587 | 18..798 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:12:54 Download gff for
BO04440.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
nuf-RB | 396..1175 | 19..798 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:24:54 Download gff for
BO04440.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
nuf-RB | 396..1175 | 19..798 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 09:24:54 Download gff for
BO04440.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 14231927..14232052 | 19..144 | 100 | | Minus |
3L | 14230263..14230310 | 751..798 | 100 | -> | Minus |
3L | 14230656..14231112 | 294..750 | 99 | -> | Minus |
3L | 14231177..14231325 | 145..293 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:12:54 Download gff for
BO04440.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 14223363..14223410 | 751..798 | 100 | -> | Minus |
arm_3L | 14223756..14224212 | 294..750 | 99 | -> | Minus |
arm_3L | 14224277..14224425 | 145..293 | 100 | -> | Minus |
arm_3L | 14225027..14225152 | 19..144 | 100 | | Minus |
BO04440.5prime Sequence
697 bp (645 high quality bases) assembled on 2005-11-29
> BO04440.5prime
GAAGTTATCAGTCGACATGTACAGCGACATAAGCTTGGAGAATCGTCATG
ACTACGATTATAGGCTGGAACTGCTGCAGCGCAAGGTGGACGATCTGTCA
GATACACAGAATATAGCTGAGGATCGGACAACCCGCACCAAGACCGAATA
TGCAGTCCTTCAGGCGCGTTATCACATGCTCGAAGAGCAGTACCGAGAGT
CGGAACTGCGTGCCGAGGAGCGTTTGGCAGAGGAGCAGAAGCGGCACCGC
GAGATTTTGGCCCGCGTGGAGCGTGAAGCCTCGCTGCAGAACGAGAACTG
CCAGATGAAGATCCGTGCCACCGAGATCGAGGCAACGGCACTGCGGGAAG
AAGCCGCCCGACTGCGTGTCCTGTGTGACAAGCAGGCCAATGACCTCCAT
CGCACCGAGGAACAGTTGGAGCTGGCGCGCGACCAAATCGGCGTCCTGCA
ACAGGAGCACGAGGAGCAGGCACAGGCACTGCGCCGCCACGAACAGGAGA
AGAAGTCCACCGAGGAGCTGATGCTGGAGCTGGGCCGGGAACTGCAGCGT
GCTCGCGAGGAGAGTGGAGCCCGGGCAATGCCGACCACATCGCCGGAGAG
CATAAGACTGGAGGAGCTGCATCAGGAGCTCGAGGAGATGCGCCAGAAGA
ACCGAACCCTCGAAGAACAGAACGAGGAGCTGCAGGCCACGATGCTG
BO04440.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:05:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33991-PC | 1509 | nuf-RC | 589..1272 | 14..697 | 3420 | 100 | Plus |
CG33991-PA | 1509 | nuf-RA | 589..1272 | 14..697 | 3420 | 100 | Plus |
CG33991-PB | 918 | nuf-RB | 1..681 | 17..697 | 3405 | 100 | Plus |
CG33991-PD | 951 | nuf-RD | 82..714 | 65..697 | 3165 | 100 | Plus |
CG33991-PE | 1587 | nuf-RE | 718..1350 | 65..697 | 3165 | 100 | Plus |
CG33991-PF | 1587 | nuf-RF | 718..1350 | 65..697 | 3165 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 02:26:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
nuf-RL | 2735 | CG33991-RL | 1331..2014 | 14..697 | 3420 | 100 | Plus |
nuf-RH | 3530 | CG33991-RH | 1376..2059 | 14..697 | 3420 | 100 | Plus |
nuf-RG | 3533 | CG33991-RG | 1379..2062 | 14..697 | 3420 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 02:26:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 14230654..14231112 | 198..656 | 2295 | 100 | Plus |
3L | 28110227 | 3L | 14230175..14230310 | 64..199 | 680 | 100 | Plus |
3L | 28110227 | 3L | 14213153..14213203 | 14..64 | 255 | 100 | Plus |
3L | 28110227 | 3L | 14231177..14231217 | 657..697 | 205 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 02:26:58 has no hits.
BO04440.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:02:58 Download gff for
BO04440.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33991-PC | 584..1272 | 9..697 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:16:05 Download gff for
BO04440.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33991-PA | 584..1272 | 9..697 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 20:47:41 Download gff for
BO04440.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
nuf-RG | 1374..2062 | 9..697 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:20:18 Download gff for
BO04440.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
nuf-RG | 1374..2062 | 9..697 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:20:18 Download gff for
BO04440.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 14213148..14213203 | 9..64 | 96 | -> | Plus |
3L | 14230176..14230310 | 65..199 | 100 | -> | Plus |
3L | 14230656..14231112 | 200..656 | 100 | -> | Plus |
3L | 14231177..14231217 | 657..697 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 20:47:41 Download gff for
BO04440.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 14206248..14206303 | 9..64 | 96 | -> | Plus |
arm_3L | 14223276..14223410 | 65..199 | 100 | -> | Plus |
arm_3L | 14223756..14224212 | 200..656 | 100 | -> | Plus |
arm_3L | 14224277..14224317 | 657..697 | 100 | | Plus |
BO04440.complete Sequence
949 bp (949 high quality bases) assembled on 2005-10-17
GenBank Submission: FJ629763
> BO04440.complete
GAAGTTATCAGTCGACATGTACAGCGACATAAGCTTGGAGAATCGTCATG
ACTACGATTATAGGCTGGAACTGCTGCAGCGCAAGGTGGACGATCTGTCA
GATACACAGAATATAGCTGAGGATCGGACAACCCGCACCAAGACCGAATA
TGCAGTCCTTCAGGCGCGTTATCACATGCTCGAAGAGCAGTACCGAGAGT
CGGAACTGCGTGCCGAGGAGCGTTTGGCAGAGGAGCAGAAGCGGCACCGC
GAGATTTTGGCCCGCGTGGAGCGTGAAGCCTCGCTGCAGAACGAGAACTG
CCAGATGAAGATCCGTGCCACCGAGATCGAGGCAACGGCACTGCGGGAAG
AAGCCGCCCGACTGCGTGTCCTGTGTGACAAGCAGGCCAATGACCTCCAT
CGCACCGAGGAACAGTTGGAGCTGGCGCGCGACCAAATCGGCGTCCTGCA
ACAGGAGCACGAGGAGCAGGCACAGGCACTGCGCCGCCACGAACAGGAGA
AGAAGTCCACCGAGGAGCTGATGCTGGAGCTGGGCCGGGAACTGCAGCGT
GCTCGCGAGGAGAGTGGAGCCCGGGCAATGCCGACCACATCGCCGGAGAG
CATAAGACTGGAGGAGCTGCATCAGGAGCTCGAGGAGATGCGCCAGAAGA
ACCGAACCCTCGAAGAACAGAACGAGGAGCTGCAGGCCACGATGCTGACC
AACCAGGCCACCATGCTGACAAATGGCGTGGAGCAGGGTCGCCATCTGCT
GAACGGAACACTCAACAGTTTGGCTCAGGAGCTCGAGGAGATGTCACAAG
CCCAGCTACAACAGGCCTTCCAGGAAAAGGAGGATGAAAATGTTCGGCTT
AAGCACTATATTGATACCATTCTACTCAACATCGTGGAGAACTATCCTCA
ATTGCTGGAAGTCAAGCCCATGGAGCGAAAGGCAAGCTTTCTAGACCAT
BO04440.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:35:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
nuf-RA | 1509 | CG33991-PA | 589..1506 | 14..931 | 4590 | 100 | Plus |
nuf-RC | 1509 | CG33991-PC | 589..1506 | 14..931 | 4590 | 100 | Plus |
nuf-RB | 918 | CG33991-PB | 1..915 | 17..931 | 4575 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:35:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
nuf-RB | 2373 | CG33991-RB | 258..1175 | 14..931 | 4590 | 100 | Plus |
nuf-RA | 2696 | CG33991-RA | 1331..2248 | 14..931 | 4590 | 100 | Plus |
nuf-RC | 3446 | CG33991-RC | 1331..2248 | 14..931 | 4590 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:35:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 14230654..14231112 | 198..656 | 2295 | 100 | Plus |
3L | 28110227 | 3L | 14231177..14231325 | 657..805 | 745 | 100 | Plus |
3L | 28110227 | 3L | 14230175..14230310 | 64..199 | 680 | 100 | Plus |
3L | 28110227 | 3L | 14231924..14232052 | 803..931 | 645 | 100 | Plus |
3L | 28110227 | 3L | 14213153..14213203 | 14..64 | 255 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 08:35:16 has no hits.
BO04440.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:31:57 Download gff for
BO04440.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
nuf-RA | 584..1509 | 9..932 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:57:54 Download gff for
BO04440.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
nuf-RB | 261..1175 | 17..933 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:23:17 Download gff for
BO04440.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
nuf-RC | 1334..2248 | 17..933 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:31:58 Download gff for
BO04440.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
nuf-RB | 253..1175 | 9..931 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:21:05 Download gff for
BO04440.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
nuf-RC | 1334..2248 | 17..933 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:21:05 Download gff for
BO04440.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 14213156..14213203 | 17..64 | 100 | -> | Plus |
3L | 14230176..14230310 | 65..199 | 100 | -> | Plus |
3L | 14230656..14231112 | 200..656 | 100 | -> | Plus |
3L | 14231177..14231325 | 657..805 | 100 | -> | Plus |
3L | 14231927..14232052 | 806..933 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:23:17 Download gff for
BO04440.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 14206256..14206303 | 17..64 | 100 | -> | Plus |
arm_3L | 14223276..14223410 | 65..199 | 100 | -> | Plus |
arm_3L | 14223756..14224212 | 200..656 | 100 | -> | Plus |
arm_3L | 14224277..14224425 | 657..805 | 100 | -> | Plus |
arm_3L | 14225027..14225152 | 806..933 | 98 | | Plus |
BO04440.pep Sequence
Translation from 16 to 949
> BO04440.pep
MYSDISLENRHDYDYRLELLQRKVDDLSDTQNIAEDRTTRTKTEYAVLQA
RYHMLEEQYRESELRAEERLAEEQKRHREILARVEREASLQNENCQMKIR
ATEIEATALREEAARLRVLCDKQANDLHRTEEQLELARDQIGVLQQEHEE
QAQALRRHEQEKKSTEELMLELGRELQRAREESGARAMPTTSPESIRLEE
LHQELEEMRQKNRTLEEQNEELQATMLTNQATMLTNGVEQGRHLLNGTLN
SLAQELEEMSQAQLQQAFQEKEDENVRLKHYIDTILLNIVENYPQLLEVK
PMERKASFLDH
BO04440.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:42:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
nuf-PB | 305 | CG33991-PB | 1..305 | 1..305 | 1522 | 100 | Plus |
nuf-PA | 502 | CG33991-PA | 198..502 | 1..305 | 1522 | 100 | Plus |
nuf-PC | 502 | CG33991-PC | 198..502 | 1..305 | 1522 | 100 | Plus |
nuf-PM | 318 | CG33991-PM | 1..318 | 1..305 | 1498 | 95.9 | Plus |
nuf-PL | 515 | CG33991-PL | 198..515 | 1..305 | 1498 | 95.9 | Plus |