Clone Sequence Records
BO04441.complete Sequence
1579 bp assembled on 2009-10-20
GenBank Submission: KX797488
> BO04441.complete
GAAGTTATCAGTCGACATGTCGCAACGCTTTGCACCTGGCCAAGCGCCGG
TGCAGTCGCGTTATCAGCCACCACCACCGGCGCCCGGCATGCGTCCCTAT
CCGCCGCCAGGCGCCTCTTTTCCACCGCGCGGGTTTCCCCTGCATCCGAA
CACTACTCAACCTGTTCCCGGCACGGCGAACGTGGCCGGGGTACCGGGAG
TTCCTGGAGTACCCGGCGTACCGGGACCATCGCTACTGCAGCGCGCCGCC
CAACAGCCGGGCTTTCAGAGCAGCCTTCGCGGTACTGGAGCCGGAGGTGG
CGGTGTTGGATCCGGCGGAGGCAGCAAGAGGTCAAATGAATCCCGCAGTT
TGGGTGGCGGTGGTAGCAAAAGTGATTTTGCGACGGCCAAAAAGAAAAAG
AAGCTGGCCGAAAAGATACTGCCGCAGAAGGTGCGGGATCTGGTGCCCGA
ATCGCAAGCGTACATGGATCTGCTGACGTTTGAGCGAAAACTGGATGCCA
CCATAATGCGCAAACGTCTGGACATCCAGGAGGCCCTCAAGCGCCCCATG
AAGCAGAAGCGCAAGCTGCGCATCTTCATCTCGAACACATTCTATCCCAG
CAAGGAGCCCACAAATGATGGCGAGGAGGGCGCCGTTGCCTCTTGGGAAT
TGCGGGTGGAGGGTCGCCTGTTAGAGGATGGCAAGGGCGATCCCAATACA
AAGATCAAACGCAAGTTTTCGTCGTTTTTCAAGTCGCTGGTTATCGAGCT
GGATAAGGAACTGTACGGTCCGGACAACCATCTGGTCGAGTGGCATCGCA
CTCACACCACCCAGGAGACGGACGGGTTCCAGGTGAAGCGGCCGGGCGAT
CGCAATGTGCGCTGCACCATCCTCCTGCTGCTTGACTACCAGCCGCTGCA
GTTCAAGCTGGACCCGCGACTCGCCAGGTTGCTGGGCGTACACACACAGA
CCAGGCCGGTGATCATATCCGCCCTGTGGCAGTACATCAAGACGCACAAG
CTACAGGATGCCCACGAGCGGGAGTACATCAATTGCGACAAGTATCTGGA
GCAGATATTCAGTTGCCAGCGGATGAAGTTTGCCGAGATACCGCAACGCC
TCAATCCGCTGCTGCATCCGCCCGATCCGATTGTGATCAATCATTTCATT
GAGAGCGGTGCAGAGAACAAGCAGACTGCCTGCTACGACATCGATGTGGA
GGTGGATGATACGCTCAAAAACCAGATGAACAGCTTCCTGATGAGCACTG
CGAGCCAACAGGAGATCCAGGGGCTGGACACCAAGATCCACGAGACGGTG
GACACGATCAACCAGATGAAGACGAACAGGGAGTTCTTCCTAAGCTTCGC
CAAGGATCCACAAATGTTTATTCATCGCTGGATCATCAGTGAGACGAGGG
ATTTGAAGCTGATGACCGATGTAGCTGGCAATCCGGAGGAGGAGCGTCGG
GCGGAGTTCTATTACCAGCCATGGACGCACGAGGCCGTTTCGCGCTACTT
CTTCACCAAGGTCAACCAGAAGCGGGCCGAATTGGAGCAGGCGCTGGGCA
TACGCAACGGCGCAAGCTTTCTAGACCAT
BO04441.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:22:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Bap60-RA | 1548 | CG4303-PA | 1..1545 | 17..1561 | 7725 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:22:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Bap60-RA | 1936 | CG4303-RA | 136..1680 | 17..1561 | 7725 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:22:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 13157914..13159197 | 1408..125 | 6420 | 100 | Minus |
| X | 23542271 | X | 13157701..13157855 | 1561..1407 | 775 | 100 | Minus |
| X | 23542271 | X | 13159266..13159373 | 124..17 | 540 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 08:22:41 has no hits.
BO04441.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-20 10:49:34 Download gff for
BO04441.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Bap60-RA | 206..1750 | 17..1563 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:10:03 Download gff for
BO04441.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Bap60-RA | 136..1680 | 17..1563 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:17:09 Download gff for
BO04441.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Bap60-RA | 136..1680 | 17..1563 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:17:09 Download gff for
BO04441.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 13157699..13157853 | 1409..1563 | 98 | <- | Minus |
| X | 13157914..13159197 | 125..1408 | 100 | <- | Minus |
| X | 13159266..13159373 | 17..124 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:10:03 Download gff for
BO04441.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 13051732..13051886 | 1409..1563 | 98 | <- | Minus |
| arm_X | 13051947..13053230 | 125..1408 | 100 | <- | Minus |
| arm_X | 13053299..13053406 | 17..124 | 100 | | Minus |
BO04441.3prime Sequence
468 bp (427 high quality bases) assembled on 2005-12-01
> BO04441.3prime
ATGGTCTAGAAAGCTTGCGCCGTTGCGTATGCCCAGCGCCTGCTCCAATT
CGGCCCGCTTCTGGTTGACCTTGGTGAAGAAGTAGCGCGAAACGGCCTCG
TGCGTCCATGGCTGGTAATAGAACTCCGCCCGACGCTCCTCCTCCGGATT
GCCAGCTACATCGGTCATCAGCTTCAAATCCCTCGTCTCACTGATGATCC
AGCGATGAATAAACATTTGTGGATCCTTGGCGAAGCTTAGGAAGAACTCC
CTGTTCGTCTTCATCTGGTTGATCGTGTCCACCGTCTCGTGGATCTTGGT
GTCCAGCCCCTGGATCTCCTGTTGGCTCGCAGTGCTCATCAGGAAGCTGT
TCATCTGGTTTTTGAGCGTATCATCCACCTCCACATCGATGTCGTAGCAG
GCAGTCTGCTTGTTCTCTGCACCGCTCTCAAATGAATGATTGATCACAAT
CGGATCGGGCGGATGCAG
BO04441.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:05:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4303-PA | 1548 | Bap60-RA | 1133..1545 | 431..19 | 2065 | 100 | Minus |
| CG4303-PA | 1548 | Bap60-RA | 1096..1129 | 468..435 | 170 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:22:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Bap60-RA | 1936 | CG4303-RA | 1231..1680 | 468..19 | 2205 | 99.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:21:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 13157914..13158210 | 172..468 | 1440 | 99 | Plus |
| X | 23542271 | X | 13157701..13157855 | 19..173 | 775 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 16:22:02 has no hits.
BO04441.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:02:59 Download gff for
BO04441.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Bap60-PA | 1096..1548 | 18..468 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:16:07 Download gff for
BO04441.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4303-PA | 1096..1548 | 18..468 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 02:41:29 Download gff for
BO04441.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Bap60-RA | 1231..1680 | 19..468 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:21:56 Download gff for
BO04441.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Bap60-RA | 1231..1680 | 19..468 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:21:56 Download gff for
BO04441.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 13157701..13157853 | 19..171 | 100 | <- | Plus |
| X | 13157914..13158210 | 172..468 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 02:41:29 Download gff for
BO04441.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 13051734..13051886 | 19..171 | 100 | <- | Plus |
| arm_X | 13051947..13052243 | 172..468 | 99 | | Plus |
BO04441.5prime Sequence
488 bp (407 high quality bases) assembled on 2005-12-01
> BO04441.5prime
GAAGTTATCAGTCGACATGTCGCAACGCTTTGCACCTGGCCAAGCGCCGG
TGCAGTCGCGTTATCAGCCACCACCACCGGCGCCCGGCATGCGTCCCTAT
CCGCCGCCAGGCGCCTCTTTTCCACCGCGCGGGTTTCCCCTGCATCCGAA
CACTACTCAACCTGTTCCCGGCACGGCGAACGTGGCCGGGGTACCGGGAG
TTCCTGGAGTACCCGGCGTACCGGGACCATCGCTACTGCAGCGCGCCGCC
CAACAGCCGGGCTTTCAGAGCAGCCTTCGCGGTACTGGAGCCGGAGGTGG
CGGTGTTGGATCCGGCGGAGGCAGCAAGAGGTCAAATGAATCCCGCAGTT
TGGGTGGCGGTGGTAGCAAAAGTGATTTTGCGACGGCCAAAAAGAAAAAG
AAGCTGGCCGAAAAGATACTGCCGCAGAAGGTGCGGGATCTGGTGCCCAA
ATCGCAAGCGTACATGGGATCTGCTGACGTTTGAGCGA
BO04441.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:05:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4303-PA | 1548 | Bap60-RA | 1..451 | 17..467 | 2230 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 16:04:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Bap60-RA | 1936 | CG4303-RA | 136..606 | 17..488 | 2320 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 16:04:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 13158835..13159197 | 488..125 | 1755 | 99.5 | Minus |
| X | 23542271 | X | 13159266..13159373 | 124..17 | 540 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 16:04:09 has no hits.
BO04441.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:02:59 Download gff for
BO04441.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Bap60-PA | 1..470 | 17..487 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:16:08 Download gff for
BO04441.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4303-PA | 1..470 | 17..487 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:29:05 Download gff for
BO04441.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Bap60-RA | 129..605 | 10..487 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:39:36 Download gff for
BO04441.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Bap60-RA | 129..605 | 10..487 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:39:36 Download gff for
BO04441.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 13158836..13159197 | 125..487 | 99 | <- | Minus |
| X | 13159266..13159380 | 10..124 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:29:05 Download gff for
BO04441.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 13052869..13053230 | 125..487 | 99 | <- | Minus |
| arm_X | 13053299..13053413 | 10..124 | 96 | | Minus |
BO04441.pep Sequence
Translation from 16 to 1579
> BO04441.pep
MSQRFAPGQAPVQSRYQPPPPAPGMRPYPPPGASFPPRGFPLHPNTTQPV
PGTANVAGVPGVPGVPGVPGPSLLQRAAQQPGFQSSLRGTGAGGGGVGSG
GGSKRSNESRSLGGGGSKSDFATAKKKKKLAEKILPQKVRDLVPESQAYM
DLLTFERKLDATIMRKRLDIQEALKRPMKQKRKLRIFISNTFYPSKEPTN
DGEEGAVASWELRVEGRLLEDGKGDPNTKIKRKFSSFFKSLVIELDKELY
GPDNHLVEWHRTHTTQETDGFQVKRPGDRNVRCTILLLLDYQPLQFKLDP
RLARLLGVHTQTRPVIISALWQYIKTHKLQDAHEREYINCDKYLEQIFSC
QRMKFAEIPQRLNPLLHPPDPIVINHFIESGAENKQTACYDIDVEVDDTL
KNQMNSFLMSTASQQEIQGLDTKIHETVDTINQMKTNREFFLSFAKDPQM
FIHRWIISETRDLKLMTDVAGNPEEERRAEFYYQPWTHEAVSRYFFTKVN
QKRAELEQALGIRNGASFLDH
BO04441.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:25:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Bap60-PA | 515 | CG4303-PA | 1..515 | 1..515 | 2722 | 100 | Plus |
