Clone Sequence Records
BO04442.5prime Sequence
871 bp (751 high quality bases) assembled on 2005-11-29
> BO04442.5prime
GAAGTTATCAGTCGACATGACCTCGTCCGAAACATCAGCATCGGCTTTCT
CGAGCTCGGACACAGCCGCCCTGGAGCGTCAGGCGGAAGTGGAGCAGCCG
GTGACCTTGGAACAGATCTGGAACGAAAACCACCGGCGATCGAGCGTAGA
TTGGATTCGCAAAAGTGGTTACAAAAGGGTTTGCCTGCAATTCCCAGACG
ACTATCTGCCCCACAGCAATGCAATTAGTGTGGGCCTGAAGGAGCTACTT
GCGCCGGAGGACGTGAAAGTCTTCATCCTGGCGGACACCACATACGGAAG
CTGCTGCGTGGACGAGATTGCGGCTGCCCATGTGGATGCAGACAGTGTGA
TTCACTTCGGAAACGCATGTCGCAGTAGGGCCGCCCGCCTGCCGGTACTT
TACCTTTATCCAGAGTTGCCGCTGGATGTGAATGTTCTCCTGAGCAAGCT
GCAAGGTCTGCGCGCGGAGAGCATAGATCGACAGGTATGCGTGTACCTGG
ACATTGGGTACCAGCATGTGTACGGGGAAAAGCTAAAGAAGCAGCTGTCC
GAGATCCTGGAGCCCAAAGAACTGCTGCTGGAACTGTTTCCGCCCATCGA
GGCAGAATCAACGACAACTAGGGAGACCACGAACCTTGAGAGGATTTGTA
TTTTCATAGGCGCCGATAACCAGCGATTCGCTAATCTCTCTCTGACCGCT
CCAGCTGCCGTGCAATGGCACATCTACGATGGATCATCTGACAGTCTCAG
CTCAAAAAATCCCCTCACGGCTCAGTTCATCCGCCGTCGCTACTTCCACA
TCGAAAAGTGTAAGGATGCACAAACACTGGGACTCATTGTGGCCACTCTT
TCGGCTGAAAGGTACTTAGAT
BO04442.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:05:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7265-PA | 1410 | CG7265-RA | 1..855 | 17..871 | 4225 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:06:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7265-RA | 1510 | CG7265-RA | 86..940 | 17..871 | 4245 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:06:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 14892962..14893655 | 871..178 | 3440 | 99.7 | Minus |
| 3R | 32079331 | 3R | 14893706..14893869 | 180..17 | 820 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 00:06:22 has no hits.
BO04442.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:03:01 Download gff for
BO04442.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7265-PA | 1..855 | 17..871 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:16:11 Download gff for
BO04442.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7265-PA | 1..855 | 17..871 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 20:30:36 Download gff for
BO04442.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7265-RA | 82..939 | 14..871 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:40:22 Download gff for
BO04442.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7265-RA | 83..940 | 14..871 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:40:22 Download gff for
BO04442.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 14892962..14893654 | 179..871 | 99 | <- | Minus |
| 3R | 14893708..14893872 | 14..178 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 20:30:36 Download gff for
BO04442.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 10718684..10719376 | 179..871 | 99 | <- | Minus |
| arm_3R | 10719430..10719594 | 14..178 | 99 | | Minus |
BO04442.3prime Sequence
930 bp (877 high quality bases) assembled on 2005-12-01
> BO04442.3prime
ATGGTCTAGAAAGCTTGCTTGGTGTGAATAGTTAATGGGTATACCACTGA
GTCCCTGCTGCAACTTGGCGGGCTCCGTCTGTCCAAGGGCAGGATCCAAT
CCCTGCCAGGTGCGATCCTCGAAGGAGAGCCCGGTATCCGTCGTCATGAG
AGCCATTTTGGCTTGTGTAGCCAGAGCAAGCGAGGCGGGATCTCCACCTG
TTTCCAGGGAATCGTTGACCGCTCCTCGTAGCCTTCCACTCACCAAGCTG
ACGTCGTTCTCTGGTATATCTGCCGCATCAAAAGGCAAGAAGCTGCGTCC
TTCCGGCAGAAGTTGTTTGAAATCCGTAACATAAGCTTCGGGGTATCTCA
TGTGCCAGGCGGGATTCAAGGCCATCTCTGCCTCGAAGACAGAGACAATG
GGCTTATAGTACTCTTTGGAGTCGTACATATTATTGAACGGGCAACCGAT
CAGGACAAAACAATCGATTTCCAGGAAGTTAGCGAGTTTGGCTGGGTTAA
TCCTGCCCACGGAAATAAGCTGCGTCTTAATGCCTCTGCCCTTCGCCATT
GTTTGCAGTCGCGTCACCACATCTAAGTAACCTTCAGCCGAAAGAGTGGC
CACAATGAGTCCCAGTGTTTGTGCATCCTTACACTTTTCGATGTGGAAGT
AGCGACGGCGGATGAACTGAGCCGTGAGGGGATTTTTTGAGCTGAGACTG
TCAGATGATCCATCGTAGATGTGCCATTGCACGGCAGCTGGAGCGGTCAG
AGAGAGATTAGCGAATCGCTGGTTATCGGCGCCTATGAAAATACAAATCC
TCTCAAGGTTCGTGGTCTCCCTAGTTGTCGTTGATTCTGCCTCGATGGGC
GGAAACAGTTCCAGCAGCAGTTCTTTGGGCTCCAGGATCTCGGACAGCTG
CTTCTTTAGCTTTTCCCCGTACACATGCTG
BO04442.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:05:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7265-PA | 1410 | CG7265-RA | 496..1407 | 930..19 | 4560 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:07:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7265-RA | 1510 | CG7265-RA | 581..1492 | 930..19 | 4560 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:06:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 14892410..14893321 | 19..930 | 4560 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 01:06:58 has no hits.
BO04442.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:03:00 Download gff for
BO04442.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7265-PA | 496..1410 | 15..930 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:16:09 Download gff for
BO04442.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7265-PA | 496..1410 | 15..930 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 11:38:12 Download gff for
BO04442.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7265-RA | 580..1496 | 14..930 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:00:43 Download gff for
BO04442.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7265-RA | 581..1497 | 14..930 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 05:00:43 Download gff for
BO04442.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 14892405..14893321 | 14..930 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 11:38:12 Download gff for
BO04442.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 10718127..10719043 | 14..930 | 99 | | Plus |
BO04442.complete Sequence
1441 bp (1441 high quality bases) assembled on 2005-09-08
GenBank Submission: FJ629764
> BO04442.complete
GAAGTTATCAGTCGACATGACCTCGTCCGAAACATCAGCATCGGCTTTCT
CGAGCTCGGACACAGCCGCCCTGGAGCGTCAGGCGGAAGTGGAGCAGCCG
GTGACCTTGGAACAGATCTGGAACGAAAACCACCGGCGATCGAGCGTAGA
TTGGATTCGCAAAAGTGGTTACAAAAGGGTTTGCCTGCAATTCCCAGACG
ACTATCTGCCCCACAGCAATGCAATTAGTGTGGGCCTGAAGGAGCTACTT
GCGCCGGAGGACGTGAAAGTCTTCATCCTGGCGGACACCACATACGGAAG
CTGCTGCGTGGACGAGATTGCGGCTGCCCATGTGGATGCAGACAGTGTGA
TTCACTTCGGAAACGCATGTCGCAGTAGGGCCGCCCGCCTGCCGGTACTT
TACCTTTATCCAGAGTTGCCGCTGGATGTGAATGTTCTCCTGAGCAAGCT
GCAAGGTCTGCGCGCGGAGAGCATAGATCGACAGGTATGCGTGTACCTGG
ACATTGGGTACCAGCATGTGTACGGGGAAAAGCTAAAGAAGCAGCTGTCC
GAGATCCTGGAGCCCAAAGAACTGCTGCTGGAACTGTTTCCGCCCATCGA
GGCAGAATCAACGACAACTAGGGAGACCACGAACCTTGAGAGGATTTGTA
TTTTCATAGGCGCCGATAACCAGCGATTCGCTAATCTCTCTCTGACCGCT
CCAGCTGCCGTGCAATGGCACATCTACGATGGATCATCTGACAGTCTCAG
CTCAAAAAATCCCCTCACGGCTCAGTTCATCCGCCGTCGCTACTTCCACA
TCGAAAAGTGTAAGGATGCACAAACACTGGGACTCATTGTGGCCACTCTT
TCGGCTGAAGGTTACTTAGATGTGGTGACGCGACTGCAAACAATGGCGAA
GGGCAGAGGCATTAAGACGCAGCTTATTTCCGTGGGCAGGATTAACCCAG
CCAAACTCGCTAACTTCCTGGAAATCGATTGTTTTGTCCTGATCGGTTGC
CCGTTCAATAATATGTACGACTCCAAAGAGTACTATAAGCCCATTGTCTC
TGTCTTCGAGGCAGAGATGGCCTTGAATCCCGCCTGGCACATGAGATACC
CCGAAGCTTATGTTACGGATTTCAAACAACTTCTGCCGGAAGGACGCAGC
TTCTTGCCTTTTGATGCGGCAGATATACCAGAGAACGACGTCAGCTTGGT
GAGTGGAAGGCTACGAGGAGCGGTCAACGATTCCCTGGAAACAGGTGGAG
ATCCCGCCTCGCTTGCTCTGGCTACACAAGCCAAAATGGCTCTCATGACG
ACGGATACCGGGCTCTCCTTCGAGGATCGCACCTGGCAGGGATTGGATCC
TGCCCTTGGACAGACGGAGCCCGCCAAGTTGCAGCAGGGACTCAGTGGTA
TACCCATTAACTATTCACACCAAGCAAGCTTTCTAGACCAT
BO04442.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:17:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7265-RA | 1410 | CG7265-PA | 1..1407 | 17..1423 | 7035 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:17:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7265-RA | 1510 | CG7265-RA | 86..1492 | 17..1423 | 7035 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:17:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 14892410..14893655 | 1423..178 | 6230 | 100 | Minus |
| 3R | 32079331 | 3R | 14893706..14893869 | 180..17 | 820 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:17:36 has no hits.
BO04442.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:40:54 Download gff for
BO04442.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7265-RA | 1..1410 | 17..1427 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:10:27 Download gff for
BO04442.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7265-RA | 82..1496 | 14..1428 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:39:03 Download gff for
BO04442.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7265-RA | 85..1491 | 17..1425 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:40:54 Download gff for
BO04442.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7265-RA | 82..1496 | 14..1428 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:07:56 Download gff for
BO04442.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7265-RA | 86..1492 | 17..1425 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:07:56 Download gff for
BO04442.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 14892408..14893654 | 179..1425 | 99 | <- | Minus |
| 3R | 14893708..14893869 | 17..178 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:39:03 Download gff for
BO04442.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 10718130..10719376 | 179..1425 | 99 | <- | Minus |
| arm_3R | 10719430..10719591 | 17..178 | 100 | | Minus |
BO04442.pep Sequence
Translation from 16 to 1441
> BO04442.pep
MTSSETSASAFSSSDTAALERQAEVEQPVTLEQIWNENHRRSSVDWIRKS
GYKRVCLQFPDDYLPHSNAISVGLKELLAPEDVKVFILADTTYGSCCVDE
IAAAHVDADSVIHFGNACRSRAARLPVLYLYPELPLDVNVLLSKLQGLRA
ESIDRQVCVYLDIGYQHVYGEKLKKQLSEILEPKELLLELFPPIEAESTT
TRETTNLERICIFIGADNQRFANLSLTAPAAVQWHIYDGSSDSLSSKNPL
TAQFIRRRYFHIEKCKDAQTLGLIVATLSAEGYLDVVTRLQTMAKGRGIK
TQLISVGRINPAKLANFLEIDCFVLIGCPFNNMYDSKEYYKPIVSVFEAE
MALNPAWHMRYPEAYVTDFKQLLPEGRSFLPFDAADIPENDVSLVSGRLR
GAVNDSLETGGDPASLALATQAKMALMTTDTGLSFEDRTWQGLDPALGQT
EPAKLQQGLSGIPINYSHQASFLDH
BO04442.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:31:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7265-PA | 469 | CG7265-PA | 1..469 | 1..469 | 2419 | 100 | Plus |
| CG11652-PC | 454 | CG11652-PC | 59..396 | 36..369 | 254 | 25.1 | Plus |
| CG11652-PB | 454 | CG11652-PB | 59..396 | 36..369 | 254 | 25.1 | Plus |
| CG11652-PA | 454 | CG11652-PA | 59..396 | 36..369 | 254 | 25.1 | Plus |
