Clone Sequence Records
BO04444.3prime Sequence
707 bp (706 high quality bases) assembled on 2005-12-01
> BO04444.3prime
ATGGTCTAGAAAGCTTGCTTCGGAGGGGGTGAGATCGTTTTCAGGTTCGT
TTTCGTTGAGAATTTGAGAAAGCAGATCGTAGAGTGGTTCTAATATCTTT
TTCGCTCCAGCATTGGTTAGATTTTTATAGTCGAACATATCGTGATGACT
GATACTGCCGTCGGTCTGGACCAAACCCTTGTCAATGGCCACCGTCTGGA
CGCGATACAAGCCCTTGGTCAATCCATTGACCACCTCGTTGATTTTGGCA
TTCTTTTCGCGCAACTTATTGGGCTGCTGGCCACGCGGCAGTAGCGAGGG
CAAAACGATATAGGCGTTGGGCAGCTTTTGCCGGATTTTCGTTACGTTCG
CGAGCACACCCTCGGCCACTTCCTCCGCGCTGTTCCGCACATTATTGGTG
CCCACATGGAGGACGACGATTTTGGGATTCACATTGTCCAGCGCACCGTT
TTCGATGCGCCACAGTACGTGCTCGGTGCAGTCGTCGCGAATGCTGAAGT
TAAGGCAGTGCAGCGGCGCAAAGTACTTATTCCAGGCCTCCGTGTCCTGG
ACGGTCTCGAAGATGCAGTCGCCGAGGAATATCACATCCGGATCCTTTTC
GCGGCAATCGGAGATGAACCGGCGATGTATGCTGTGCCAACGCTTGTCGC
CATCCAGATCGGGCAATGGGGTGGGCAGCACACAGGGATTCATGTCGACT
GATAACT
BO04444.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:05:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8962-PA | 678 | Paf-AHalpha-RA | 1..675 | 693..19 | 3375 | 100 | Minus |
CG8962-PB | 678 | Paf-AHalpha-RB | 1..675 | 693..19 | 3375 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 19:24:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Paf-AHalpha-RB | 1435 | CG8962-RB | 448..1126 | 697..19 | 3380 | 99.9 | Minus |
Paf-AHalpha-RA | 1507 | CG8962-RA | 520..1198 | 697..19 | 3380 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 19:24:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 15784665..15785064 | 298..697 | 1985 | 99.8 | Plus |
X | 23542271 | X | 15784318..15784596 | 19..297 | 1395 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-04 19:24:08 has no hits.
BO04444.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:03:04 Download gff for
BO04444.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8962-PB | 1..678 | 15..693 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:16:14 Download gff for
BO04444.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8962-PB | 1..678 | 15..693 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:16:45 Download gff for
BO04444.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Paf-AHalpha-RA | 520..1201 | 15..697 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:31:57 Download gff for
BO04444.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Paf-AHalpha-RA | 520..1201 | 15..697 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 21:31:57 Download gff for
BO04444.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 15784314..15784596 | 15..297 | 99 | <- | Plus |
X | 15784665..15785064 | 298..697 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:16:45 Download gff for
BO04444.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 15678347..15678629 | 15..297 | 99 | <- | Plus |
arm_X | 15678698..15679097 | 298..697 | 99 | | Plus |
BO04444.5prime Sequence
707 bp (706 high quality bases) assembled on 2005-12-01
> BO04444.5prime
GAAGTTATCAGTCGACATGAATCCCTGTGTGCTGCCCACCCCATTGCCCG
ATCTGGATGGCGACAAGCGTTGGCACAGCATACATCGCCGGTTCATCTCC
GATTGCCGCGAAAAGGATCCGGATGTGATATTCCTCGGCGACTGCATCTT
CGAGACCGTCCAGGACACGGAGGCCTGGAATAAGTACTTTGCGCCGCTGC
ACTGCCTTAACTTCAGCATTCGCGACGACTGCACCGAGCACGTACTGTGG
CGCATCGAAAACGGTGCGCTGGACAATGTGAATCCCAAAATCGTCGTCCT
CCATGTGGGCACCAATAATGTGCGGAACAGCGCGGAGGAAGTGGCCGAGG
GTGTGCTCGCGAACGTAACGAAAATCCGGCAAAAGCTGCCCAACGCCTAT
ATCGTTTTGCCCTCGCTACTGCCGCGTGGCCAGCAGCCCAATAAGTTGCG
CGAAAAGAATGCCAAAATCAACGAGGTGGTCAATGGATTGACCAAGGGCT
TGTATCGCGTCCAGACGGTGGCCATTGACAAGGGTTTGGTCCAGACCGAC
GGCAGTATCAGTCATCACGATATGTTCGACTATAAAAATCTAACCAATGC
TGGAGCGAAAAAGATATTAGAACCACTCTACGATCTGCTTTCTCAAATTC
TCAACGAAAACGAACCTGAAAACGATCTCACCCCCTCCGAAGCAAGCTTT
CTAGACC
BO04444.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:05:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8962-PA | 678 | Paf-AHalpha-RA | 1..675 | 17..691 | 3375 | 100 | Plus |
CG8962-PB | 678 | Paf-AHalpha-RB | 1..675 | 17..691 | 3375 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:33:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Paf-AHalpha-RB | 1435 | CG8962-RB | 448..1126 | 13..691 | 3380 | 99.9 | Plus |
Paf-AHalpha-RA | 1507 | CG8962-RA | 520..1198 | 13..691 | 3380 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:33:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 15784665..15785064 | 412..13 | 1985 | 99.8 | Minus |
X | 23542271 | X | 15784318..15784596 | 691..413 | 1395 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 15:33:51 has no hits.
BO04444.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:03:05 Download gff for
BO04444.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8962-PB | 1..678 | 17..695 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:16:16 Download gff for
BO04444.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8962-PB | 1..678 | 17..695 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:33:23 Download gff for
BO04444.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Paf-AHalpha-RA | 520..1201 | 13..695 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:28:56 Download gff for
BO04444.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Paf-AHalpha-RA | 520..1201 | 13..695 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:28:56 Download gff for
BO04444.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 15784314..15784596 | 413..695 | 99 | <- | Minus |
X | 15784665..15785064 | 13..412 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:33:23 Download gff for
BO04444.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 15678347..15678629 | 413..695 | 99 | <- | Minus |
arm_X | 15678698..15679097 | 13..412 | 99 | | Minus |
BO04444.complete Sequence
709 bp (709 high quality bases) assembled on 2005-10-17
GenBank Submission: FJ629765
> BO04444.complete
GAAGTTATCAGTCGACATGAATCCCTGTGTGCTGCCCACCCCATTGCCCG
ATCTGGATGGCGACAAGCGTTGGCACAGCATACATCGCCGGTTCATCTCC
GATTGCCGCGAAAAGGATCCGGATGTGATATTCCTCGGCGACTGCATCTT
CGAGACCGTCCAGGACACGGAGGCCTGGAATAAGTACTTTGCGCCGCTGC
ACTGCCTTAACTTCAGCATTCGCGACGACTGCACCGAGCACGTACTGTGG
CGCATCGAAAACGGTGCGCTGGACAATGTGAATCCCAAAATCGTCGTCCT
CCATGTGGGCACCAATAATGTGCGGAACAGCGCGGAGGAAGTGGCCGAGG
GTGTGCTCGCGAACGTAACGAAAATCCGGCAAAAGCTGCCCAACGCCTAT
ATCGTTTTGCCCTCGCTACTGCCGCGTGGCCAGCAGCCCAATAAGTTGCG
CGAAAAGAATGCCAAAATCAACGAGGTGGTCAATGGATTGACCAAGGGCT
TGTATCGCGTCCAGACGGTGGCCATTGACAAGGGTTTGGTCCAGACCGAC
GGCAGTATCAGTCATCACGATATGTTCGACTATAAAAATCTAACCAATGC
TGGAGCGAAAAAGATATTAGAACCACTCTACGATCTGCTTTCTCAAATTC
TCAACGAAAACGAACCTGAAAACGATCTCACCCCCTCCGAAGCAAGCTTT
CTAGACCAT
BO04444.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:38:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Paf-AHalpha-RB | 678 | CG8962-PB | 1..675 | 17..691 | 3375 | 100 | Plus |
Paf-AHalpha-RA | 678 | CG8962-PA | 1..675 | 17..691 | 3375 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:38:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Paf-AHalpha-RB | 1435 | CG8962-RB | 448..1126 | 13..691 | 3380 | 99.9 | Plus |
Paf-AHalpha-RA | 1507 | CG8962-RA | 520..1198 | 13..691 | 3380 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:38:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 15784665..15785064 | 412..13 | 1985 | 99.8 | Minus |
X | 23542271 | X | 15784318..15784596 | 691..413 | 1395 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 10:38:46 has no hits.
BO04444.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:32:00 Download gff for
BO04444.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Paf-AHalpha-RB | 1..678 | 17..695 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:59:01 Download gff for
BO04444.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Paf-AHalpha-RB | 444..1125 | 13..695 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:26:27 Download gff for
BO04444.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Paf-AHalpha-RA | 524..1198 | 17..693 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:32:00 Download gff for
BO04444.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Paf-AHalpha-RB | 444..1125 | 13..695 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:27:15 Download gff for
BO04444.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Paf-AHalpha-RA | 524..1198 | 17..693 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:27:15 Download gff for
BO04444.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 15784316..15784596 | 413..693 | 99 | <- | Minus |
X | 15784665..15785060 | 17..412 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:26:27 Download gff for
BO04444.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 15678349..15678629 | 413..693 | 99 | <- | Minus |
arm_X | 15678698..15679093 | 17..412 | 100 | | Minus |
BO04444.pep Sequence
Translation from 16 to 709
> BO04444.pep
MNPCVLPTPLPDLDGDKRWHSIHRRFISDCREKDPDVIFLGDCIFETVQD
TEAWNKYFAPLHCLNFSIRDDCTEHVLWRIENGALDNVNPKIVVLHVGTN
NVRNSAEEVAEGVLANVTKIRQKLPNAYIVLPSLLPRGQQPNKLREKNAK
INEVVNGLTKGLYRVQTVAIDKGLVQTDGSISHHDMFDYKNLTNAGAKKI
LEPLYDLLSQILNENEPENDLTPSEASFLDH
BO04444.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:36:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Paf-AHalpha-PB | 225 | CG8962-PB | 1..225 | 1..225 | 1199 | 100 | Plus |
Paf-AHalpha-PA | 225 | CG8962-PA | 1..225 | 1..225 | 1199 | 100 | Plus |