Clone BO04444 Report

Search the DGRC for BO04444

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:44
Well:44
Vector:pDNR-Dual
Associated Gene/TranscriptPaf-AHalpha-RA
Protein status:BO04444.pep: validated full length
Sequenced Size:709

Clone Sequence Records

BO04444.3prime Sequence

707 bp (706 high quality bases) assembled on 2005-12-01

> BO04444.3prime
ATGGTCTAGAAAGCTTGCTTCGGAGGGGGTGAGATCGTTTTCAGGTTCGT
TTTCGTTGAGAATTTGAGAAAGCAGATCGTAGAGTGGTTCTAATATCTTT
TTCGCTCCAGCATTGGTTAGATTTTTATAGTCGAACATATCGTGATGACT
GATACTGCCGTCGGTCTGGACCAAACCCTTGTCAATGGCCACCGTCTGGA
CGCGATACAAGCCCTTGGTCAATCCATTGACCACCTCGTTGATTTTGGCA
TTCTTTTCGCGCAACTTATTGGGCTGCTGGCCACGCGGCAGTAGCGAGGG
CAAAACGATATAGGCGTTGGGCAGCTTTTGCCGGATTTTCGTTACGTTCG
CGAGCACACCCTCGGCCACTTCCTCCGCGCTGTTCCGCACATTATTGGTG
CCCACATGGAGGACGACGATTTTGGGATTCACATTGTCCAGCGCACCGTT
TTCGATGCGCCACAGTACGTGCTCGGTGCAGTCGTCGCGAATGCTGAAGT
TAAGGCAGTGCAGCGGCGCAAAGTACTTATTCCAGGCCTCCGTGTCCTGG
ACGGTCTCGAAGATGCAGTCGCCGAGGAATATCACATCCGGATCCTTTTC
GCGGCAATCGGAGATGAACCGGCGATGTATGCTGTGCCAACGCTTGTCGC
CATCCAGATCGGGCAATGGGGTGGGCAGCACACAGGGATTCATGTCGACT
GATAACT

BO04444.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:05:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG8962-PA 678 Paf-AHalpha-RA 1..675 693..19 3375 100 Minus
CG8962-PB 678 Paf-AHalpha-RB 1..675 693..19 3375 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 19:24:11
Subject Length Description Subject Range Query Range Score Percent Strand
Paf-AHalpha-RB 1435 CG8962-RB 448..1126 697..19 3380 99.9 Minus
Paf-AHalpha-RA 1507 CG8962-RA 520..1198 697..19 3380 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 19:24:05
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 15784665..15785064 298..697 1985 99.8 Plus
X 23542271 X 15784318..15784596 19..297 1395 100 Plus
Blast to na_te.dros performed on 2015-02-04 19:24:08 has no hits.

BO04444.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:03:04 Download gff for BO04444.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8962-PB 1..678 15..693 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:16:14 Download gff for BO04444.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8962-PB 1..678 15..693 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:16:45 Download gff for BO04444.3prime
Subject Subject Range Query Range Percent Splice Strand
Paf-AHalpha-RA 520..1201 15..697 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:31:57 Download gff for BO04444.3prime
Subject Subject Range Query Range Percent Splice Strand
Paf-AHalpha-RA 520..1201 15..697 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 21:31:57 Download gff for BO04444.3prime
Subject Subject Range Query Range Percent Splice Strand
X 15784314..15784596 15..297 99 <- Plus
X 15784665..15785064 298..697 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:16:45 Download gff for BO04444.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 15678347..15678629 15..297 99 <- Plus
arm_X 15678698..15679097 298..697 99   Plus

BO04444.5prime Sequence

707 bp (706 high quality bases) assembled on 2005-12-01

> BO04444.5prime
GAAGTTATCAGTCGACATGAATCCCTGTGTGCTGCCCACCCCATTGCCCG
ATCTGGATGGCGACAAGCGTTGGCACAGCATACATCGCCGGTTCATCTCC
GATTGCCGCGAAAAGGATCCGGATGTGATATTCCTCGGCGACTGCATCTT
CGAGACCGTCCAGGACACGGAGGCCTGGAATAAGTACTTTGCGCCGCTGC
ACTGCCTTAACTTCAGCATTCGCGACGACTGCACCGAGCACGTACTGTGG
CGCATCGAAAACGGTGCGCTGGACAATGTGAATCCCAAAATCGTCGTCCT
CCATGTGGGCACCAATAATGTGCGGAACAGCGCGGAGGAAGTGGCCGAGG
GTGTGCTCGCGAACGTAACGAAAATCCGGCAAAAGCTGCCCAACGCCTAT
ATCGTTTTGCCCTCGCTACTGCCGCGTGGCCAGCAGCCCAATAAGTTGCG
CGAAAAGAATGCCAAAATCAACGAGGTGGTCAATGGATTGACCAAGGGCT
TGTATCGCGTCCAGACGGTGGCCATTGACAAGGGTTTGGTCCAGACCGAC
GGCAGTATCAGTCATCACGATATGTTCGACTATAAAAATCTAACCAATGC
TGGAGCGAAAAAGATATTAGAACCACTCTACGATCTGCTTTCTCAAATTC
TCAACGAAAACGAACCTGAAAACGATCTCACCCCCTCCGAAGCAAGCTTT
CTAGACC

BO04444.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:05:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG8962-PA 678 Paf-AHalpha-RA 1..675 17..691 3375 100 Plus
CG8962-PB 678 Paf-AHalpha-RB 1..675 17..691 3375 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:33:52
Subject Length Description Subject Range Query Range Score Percent Strand
Paf-AHalpha-RB 1435 CG8962-RB 448..1126 13..691 3380 99.9 Plus
Paf-AHalpha-RA 1507 CG8962-RA 520..1198 13..691 3380 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:33:49
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 15784665..15785064 412..13 1985 99.8 Minus
X 23542271 X 15784318..15784596 691..413 1395 100 Minus
Blast to na_te.dros performed on 2015-02-11 15:33:51 has no hits.

BO04444.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:03:05 Download gff for BO04444.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8962-PB 1..678 17..695 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:16:16 Download gff for BO04444.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8962-PB 1..678 17..695 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:33:23 Download gff for BO04444.5prime
Subject Subject Range Query Range Percent Splice Strand
Paf-AHalpha-RA 520..1201 13..695 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:28:56 Download gff for BO04444.5prime
Subject Subject Range Query Range Percent Splice Strand
Paf-AHalpha-RA 520..1201 13..695 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:28:56 Download gff for BO04444.5prime
Subject Subject Range Query Range Percent Splice Strand
X 15784314..15784596 413..695 99 <- Minus
X 15784665..15785064 13..412 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:33:23 Download gff for BO04444.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 15678347..15678629 413..695 99 <- Minus
arm_X 15678698..15679097 13..412 99   Minus

BO04444.complete Sequence

709 bp (709 high quality bases) assembled on 2005-10-17

GenBank Submission: FJ629765

> BO04444.complete
GAAGTTATCAGTCGACATGAATCCCTGTGTGCTGCCCACCCCATTGCCCG
ATCTGGATGGCGACAAGCGTTGGCACAGCATACATCGCCGGTTCATCTCC
GATTGCCGCGAAAAGGATCCGGATGTGATATTCCTCGGCGACTGCATCTT
CGAGACCGTCCAGGACACGGAGGCCTGGAATAAGTACTTTGCGCCGCTGC
ACTGCCTTAACTTCAGCATTCGCGACGACTGCACCGAGCACGTACTGTGG
CGCATCGAAAACGGTGCGCTGGACAATGTGAATCCCAAAATCGTCGTCCT
CCATGTGGGCACCAATAATGTGCGGAACAGCGCGGAGGAAGTGGCCGAGG
GTGTGCTCGCGAACGTAACGAAAATCCGGCAAAAGCTGCCCAACGCCTAT
ATCGTTTTGCCCTCGCTACTGCCGCGTGGCCAGCAGCCCAATAAGTTGCG
CGAAAAGAATGCCAAAATCAACGAGGTGGTCAATGGATTGACCAAGGGCT
TGTATCGCGTCCAGACGGTGGCCATTGACAAGGGTTTGGTCCAGACCGAC
GGCAGTATCAGTCATCACGATATGTTCGACTATAAAAATCTAACCAATGC
TGGAGCGAAAAAGATATTAGAACCACTCTACGATCTGCTTTCTCAAATTC
TCAACGAAAACGAACCTGAAAACGATCTCACCCCCTCCGAAGCAAGCTTT
CTAGACCAT

BO04444.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:38:47
Subject Length Description Subject Range Query Range Score Percent Strand
Paf-AHalpha-RB 678 CG8962-PB 1..675 17..691 3375 100 Plus
Paf-AHalpha-RA 678 CG8962-PA 1..675 17..691 3375 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:38:48
Subject Length Description Subject Range Query Range Score Percent Strand
Paf-AHalpha-RB 1435 CG8962-RB 448..1126 13..691 3380 99.9 Plus
Paf-AHalpha-RA 1507 CG8962-RA 520..1198 13..691 3380 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:38:45
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 15784665..15785064 412..13 1985 99.8 Minus
X 23542271 X 15784318..15784596 691..413 1395 100 Minus
Blast to na_te.dros performed on 2014-11-27 10:38:46 has no hits.

BO04444.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:32:00 Download gff for BO04444.complete
Subject Subject Range Query Range Percent Splice Strand
Paf-AHalpha-RB 1..678 17..695 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:59:01 Download gff for BO04444.complete
Subject Subject Range Query Range Percent Splice Strand
Paf-AHalpha-RB 444..1125 13..695 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:26:27 Download gff for BO04444.complete
Subject Subject Range Query Range Percent Splice Strand
Paf-AHalpha-RA 524..1198 17..693 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:32:00 Download gff for BO04444.complete
Subject Subject Range Query Range Percent Splice Strand
Paf-AHalpha-RB 444..1125 13..695 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:27:15 Download gff for BO04444.complete
Subject Subject Range Query Range Percent Splice Strand
Paf-AHalpha-RA 524..1198 17..693 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:27:15 Download gff for BO04444.complete
Subject Subject Range Query Range Percent Splice Strand
X 15784316..15784596 413..693 99 <- Minus
X 15784665..15785060 17..412 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:26:27 Download gff for BO04444.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 15678349..15678629 413..693 99 <- Minus
arm_X 15678698..15679093 17..412 100   Minus

BO04444.pep Sequence

Translation from 16 to 709

> BO04444.pep
MNPCVLPTPLPDLDGDKRWHSIHRRFISDCREKDPDVIFLGDCIFETVQD
TEAWNKYFAPLHCLNFSIRDDCTEHVLWRIENGALDNVNPKIVVLHVGTN
NVRNSAEEVAEGVLANVTKIRQKLPNAYIVLPSLLPRGQQPNKLREKNAK
INEVVNGLTKGLYRVQTVAIDKGLVQTDGSISHHDMFDYKNLTNAGAKKI
LEPLYDLLSQILNENEPENDLTPSEASFLDH

BO04444.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:36:35
Subject Length Description Subject Range Query Range Score Percent Strand
Paf-AHalpha-PB 225 CG8962-PB 1..225 1..225 1199 100 Plus
Paf-AHalpha-PA 225 CG8962-PA 1..225 1..225 1199 100 Plus