Clone BO04445 Report

Search the DGRC for BO04445

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:44
Well:45
Vector:pDNR-Dual
Associated Gene/Transcript
Protein status:BO04445.pep: validated full length
Sequenced Size:934

Clone Sequence Records

BO04445.3prime Sequence

890 bp (806 high quality bases) assembled on 2005-12-01

> BO04445.3prime
ATGGTCTAGAAAGCTTGCGTACCATTTGGACTCCTCCTTGTCAGCGAGCA
GAGGTCTCCGCACCGCATCCCCACCATCGAGATGGTGGGGACCACGACTG
CCATTGTCGTCCTTTCCAGACAGTCGCTGGTACTGGCTTCCCTCTCTGCT
GGGCCACCTGACCAGTGGTATGCCGGCATCAGGGCAGAAGATGGAGGGAT
AGTATTGTGTGTAGCTTATATAGCCTGCAAACAGGCCAATCAGCCCGCCG
ATGGTCACATCCTGCCAGTGGTGGTGGTAGTCGCAGGTGCGACTAACTGC
AACCAGCAGTGCGATAAACAGAGGTATCACAGCGATGCAGAGCCGCCTGT
CTCTTGTGTACCAGTAGAAGGCGATAGTGACCAGAAAGGGAGCCACTATC
ACCCAGAAGAGCAGCTCCCCGCCCCTGACAATGTCCGGTCGCCTTGGGTT
CTTGTATAGCCACAGCTCTTCCTCGTGGATTTCCCGTTTGAATGCTGTCA
TCGTCTCCAACTTGAAGAAGGTAATGACGAGGAGAACGCGAAGAACAACA
TCTACGGCATCGCTGAGCTTCGCATTAGAGTTTCCTGTTCTGTGGCTTCG
TTCCTCTCGCTTTTCTGGCTGAACGGAGCTGCTGTCCGTGTTCATAGCAA
GTTCATTGCGCCACATTTCGTCGTCGTTGGTCCTGGTCCTCGATCCTGTA
TTCCTGACGTCCTCTGCGGAACTGTCGCTGAGGGTTCGCCTGGATTCTTG
ACCTTCCTTGCTCGCAGTCATTTCGTTAGTCCGTTGGGTATATTCGGTTG
TCAGCTTANGCCTGGTGCTTGTCGCCTGCTCCTTGCCTGTGCCGCCAATA
TTGCCGTTGCGGTCGATTGGATTTTCGCGGCGGCGACTTC

BO04445.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:05:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG12746-PA 903 CG12746-RA 29..900 890..19 4341 99.8 Minus
CG12746-PC 1239 CG12746-RC 29..576 890..343 2721 99.8 Minus
CG12746-PB 1092 CG12746-RB 1..429 771..343 2145 100 Minus
CG12746-PD 1092 CG12746-RD 1..429 771..343 2145 100 Minus
CG12746-PC 1239 CG12746-RC 908..1236 347..19 1645 100 Minus
CG12746-PB 1092 CG12746-RB 761..1089 347..19 1645 100 Minus
CG12746-PD 1092 CG12746-RD 761..1089 347..19 1645 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:20:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG12746-RE 1509 CG12746-RE 224..771 890..343 2729 99.8 Minus
CG12746-RD 1381 CG12746-RD 161..643 825..343 2404 99.8 Minus
CG12746-RB 1339 CG12746-RB 119..601 825..343 2404 99.8 Minus
CG12746-RE 1509 CG12746-RE 1103..1431 347..19 1645 100 Minus
CG12746-RD 1381 CG12746-RD 975..1303 347..19 1645 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:20:00
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 5567029..5567357 347..19 1645 100 Minus
3R 32079331 3R 5566086..5566398 827..515 1554 99.7 Minus
3R 32079331 3R 5566467..5566638 514..343 860 100 Minus
3R 32079331 3R 5565389..5565454 890..825 330 100 Minus
Blast to na_te.dros performed on 2015-02-10 17:20:05 has no hits.

BO04445.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:03:06 Download gff for BO04445.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12746-PA 29..903 15..890 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:16:17 Download gff for BO04445.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12746-PA 29..903 15..890 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 02:41:36 Download gff for BO04445.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12746-RE 224..773 342..890 99 <- Minus
CG12746-RE 1109..1441 10..341 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:42:54 Download gff for BO04445.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12746-RE 224..773 342..890 99 <- Minus
CG12746-RE 1109..1441 10..341 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:42:54 Download gff for BO04445.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 5567030..5567367 10..346 99   Minus
3R 5565389..5565453 826..890 100 -> Minus
3R 5566088..5566398 515..825 99 -> Minus
3R 5566467..5566634 347..514 100 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 02:41:36 Download gff for BO04445.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 1391111..1391175 826..890 100 -> Minus
arm_3R 1392189..1392356 347..514 100 -> Minus
arm_3R 1391810..1392120 515..825 99 -> Minus
arm_3R 1392752..1393089 10..346 99   Minus

BO04445.5prime Sequence

924 bp (784 high quality bases) assembled on 2005-11-29

> BO04445.5prime
GAAGTTATCAGTCGACATGCCCGATAGTTGTACGGCGGACCTACGAAGTC
GCCGCCGCGAAAATCCAATCGACCGCAACGGCAATATTGGCGGCACAGGC
AAGGAGCAGGCGACAAGCACCAGGCCTAAGCTGACAACCGAATATACCCA
ACGGACTAACGAAATGACTGCGAGCAAGGAAGGTCAAGAATCCAGGCGAA
CCCTCAGCGACAGTTCCGCAGAGGACGTCAGGAATACAGGATCGAGGACC
AGGACCAACGACGACGAAATGTGGCGCAATGAACTTGCTATGAACACGGA
CAGCAGCTCCGTTCAGCCAGAAAAGCGAGAGGAACGAAGCCACAGAACAG
GAAACTCTAATGCGAAGCTCAGCGATGCCGTAGATGTTGTTCTTCGCGTT
CTCCTCGTCATTACCTTCTTCAAGTTGGAGACGATGACAGCATTCAAACG
GGAAATCCACGAGGAAGAGCTGTGGCTATACAAGAACCCAAGGCGACCGG
ACATTGTCAGGGGCGGGGAGCTGCTCTTCTGGGTGATAGTGGCTCCCTTT
CTGGTCACTATCGCCTTCTACTGGTACACAAGAGACAGGCGGCTCTGCAT
CGCTGTGATACCTCTGTTTATCGCACTGCTGGTTGCAGTTAGTCGCACCT
GCGACTACCACCACCACTGGCAGGATGTGACCATCGGCGGGCTGATTGGC
CTGTTTGCAGGCTATATAAGCTACACACAATACTATCCCTCCATCTTCTG
CCCTGATGCCGGCATACCACTGGTCAGGTGGCCCAGCAGAGAGGGAAGCC
AGTACCAGCGACTGTCTGGAAAGGACGACAATGGCAGTCGTGGTCCCCAC
CATCTCGATGGTGGGGATGCGGTGCGGAGACCTCTGCTCGCTGACAAGGA
GGAGTCCAAATGGTACGCAAGCTT

BO04445.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:05:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG12746-PA 903 CG12746-RA 1..900 17..916 4500 100 Plus
CG12746-PC 1239 CG12746-RC 1..576 17..592 2880 100 Plus
CG12746-PB 1092 CG12746-RB 1..429 164..592 2145 100 Plus
CG12746-PD 1092 CG12746-RD 1..429 164..592 2145 100 Plus
CG12746-PC 1239 CG12746-RC 908..1236 588..916 1645 100 Plus
CG12746-PB 1092 CG12746-RB 761..1089 588..916 1645 100 Plus
CG12746-PD 1092 CG12746-RD 761..1089 588..916 1645 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:34:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG12746-RE 1509 CG12746-RE 196..771 17..592 2880 100 Plus
CG12746-RD 1381 CG12746-RD 161..643 110..592 2415 100 Plus
CG12746-RB 1339 CG12746-RB 119..601 110..592 2415 100 Plus
CG12746-RE 1509 CG12746-RE 1103..1431 588..916 1645 100 Plus
CG12746-RD 1381 CG12746-RD 975..1303 588..916 1645 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:33:59
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 5567029..5567357 588..916 1645 100 Plus
3R 32079331 3R 5566086..5566398 108..420 1565 100 Plus
3R 32079331 3R 5566467..5566638 421..592 860 100 Plus
3R 32079331 3R 5565361..5565454 17..110 470 100 Plus
Blast to na_te.dros performed on 2015-02-11 15:34:00 has no hits.

BO04445.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:03:07 Download gff for BO04445.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12746-PA 1..903 17..920 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:16:18 Download gff for BO04445.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12746-PA 1..903 17..920 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:33:25 Download gff for BO04445.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12746-RE 190..773 11..593 99 <- Plus
CG12746-RE 1109..1440 594..924 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:29:00 Download gff for BO04445.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12746-RE 190..773 11..593 99 <- Plus
CG12746-RE 1109..1440 594..924 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:29:00 Download gff for BO04445.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 5567030..5567366 589..924 99   Plus
3R 5565355..5565453 11..109 97 -> Plus
3R 5566088..5566398 110..420 100 -> Plus
3R 5566467..5566634 421..588 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:33:25 Download gff for BO04445.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 1391077..1391175 11..109 97 -> Plus
arm_3R 1391810..1392120 110..420 100 -> Plus
arm_3R 1392189..1392356 421..588 100 -> Plus
arm_3R 1392752..1393088 589..924 99   Plus

BO04445.complete Sequence

934 bp (934 high quality bases) assembled on 2005-09-08

GenBank Submission: FJ629766

> BO04445.complete
GAAGTTATCAGTCGACATGCCCGATAGTTGTACGGCGGACCTACGAAGTC
GCCGCCGCGAAAATCCAATCGACCGCAACGGCAATATTGGCGGCACAGGC
AAGGAGCAGGCGACAAGCACCAGGCCTAAGCTGACAACCGAATATACCCA
ACGGACTAACGAAATGACTGCGAGCAAGGAAGGTCAAGAATCCAGGCGAA
CCCTCAGCGACAGTTCCGCAGAGGACGTCAGGAATACAGGATCGAGGACC
AGGACCAACGACGACGAAATGTGGCGCAATGAACTTGCTATGAACACGGA
CAGCAGCTCCGTTCAGCCAGAAAAGCGAGAGGAACGAAGCCACAGAACAG
GAAACTCTAATGCGAAGCTCAGCGATGCCGTAGATGTTGTTCTTCGCGTT
CTCCTCGTCATTACCTTCTTCAAGTTGGAGACGATGACAGCATTCAAACG
GGAAATCCACGAGGAAGAGCTGTGGCTATACAAGAACCCAAGGCGACCGG
ACATTGTCAGGGGCGGGGAGCTGCTCTTCTGGGTGATAGTGGCTCCCTTT
CTGGTCACTATCGCCTTCTACTGGTACACAAGAGACAGGCGGCTCTGCAT
CGCTGTGATACCTCTGTTTATCGCACTGCTGGTTGCAGTTAGTCGCACCT
GCGACTACCACCACCACTGGCAGGATGTGACCATCGGCGGGCTGATTGGC
CTGTTTGCAGGCTATATAAGCTACACACAATACTATCCCTCCATCTTCTG
CCCTGATGCCGGCATACCACTGGTCAGGTGGCCCAGCAGAGAGGGAAGCC
AGTACCAGCGACTGTCTGGAAAGGACGACAATGGCAGTCGTGGTCCCCAC
CATCTCGATGGTGGGGATGCGGTGCGGAGACCTCTGCTCGCTGACAAGGA
GGAGTCCAAATGGTACGCAAGCTTTCTAGACCAT

BO04445.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:14:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG12746-RE 1092 CG12746-PE 1..429 164..592 2145 100 Plus
CG12746-RD 1092 CG12746-PD 1..429 164..592 2145 100 Plus
CG12746-RB 1092 CG12746-PB 1..429 164..592 2145 100 Plus
CG12746-RE 1092 CG12746-PE 761..1089 588..916 1645 100 Plus
CG12746-RD 1092 CG12746-PD 761..1089 588..916 1645 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:14:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG12746-RE 1509 CG12746-RE 196..771 17..592 2880 100 Plus
CG12746-RD 1381 CG12746-RD 161..643 110..592 2415 100 Plus
CG12746-RB 1339 CG12746-RB 119..601 110..592 2415 100 Plus
CG12746-RE 1509 CG12746-RE 1103..1431 588..916 1645 100 Plus
CG12746-RD 1381 CG12746-RD 975..1303 588..916 1645 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:14:08
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 5567029..5567357 588..916 1645 100 Plus
3R 32079331 3R 5566086..5566398 108..420 1565 100 Plus
3R 32079331 3R 5566467..5566638 421..592 860 100 Plus
3R 32079331 3R 5565361..5565454 17..110 470 100 Plus
Blast to na_te.dros performed on 2014-11-27 08:14:10 has no hits.

BO04445.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:40:55 Download gff for BO04445.complete
Subject Subject Range Query Range Percent Splice Strand
CG12746-RE 1..431 164..593 99 <- Plus
CG12746-RE 767..1092 594..920 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:10:29 Download gff for BO04445.complete
Subject Subject Range Query Range Percent Splice Strand
CG12746-RE 190..773 11..593 99 <- Plus
CG12746-RE 1109..1441 594..925 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:09:01 Download gff for BO04445.complete
Subject Subject Range Query Range Percent Splice Strand
CG12746-RE 196..773 17..593 99 <- Plus
CG12746-RE 1109..1431 594..918 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:40:56 Download gff for BO04445.complete
Subject Subject Range Query Range Percent Splice Strand
CG12746-RE 190..773 11..593 99 <- Plus
CG12746-RE 1109..1441 594..925 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:13:42 Download gff for BO04445.complete
Subject Subject Range Query Range Percent Splice Strand
CG12746-RE 196..773 17..593 99 <- Plus
CG12746-RE 1109..1431 594..918 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:13:42 Download gff for BO04445.complete
Subject Subject Range Query Range Percent Splice Strand
3R 5566467..5566634 421..588 100 -> Plus
3R 5567030..5567357 589..918 99   Plus
3R 5565361..5565453 17..109 100 -> Plus
3R 5566088..5566398 110..420 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:09:01 Download gff for BO04445.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 1391083..1391175 17..109 100 -> Plus
arm_3R 1391810..1392120 110..420 100 -> Plus
arm_3R 1392189..1392356 421..588 100 -> Plus
arm_3R 1392752..1393079 589..918 99   Plus

BO04445.pep Sequence

Translation from 16 to 934

> BO04445.pep
MPDSCTADLRSRRRENPIDRNGNIGGTGKEQATSTRPKLTTEYTQRTNEM
TASKEGQESRRTLSDSSAEDVRNTGSRTRTNDDEMWRNELAMNTDSSSVQ
PEKREERSHRTGNSNAKLSDAVDVVLRVLLVITFFKLETMTAFKREIHEE
ELWLYKNPRRPDIVRGGELLFWVIVAPFLVTIAFYWYTRDRRLCIAVIPL
FIALLVAVSRTCDYHHHWQDVTIGGLIGLFAGYISYTQYYPSIFCPDAGI
PLVRWPSREGSQYQRLSGKDDNGSRGPHHLDGGDAVRRPLLADKEESKWY
ASFLDH

BO04445.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:31:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG12746-PE 363 CG12746-PE 1..143 50..192 738 100 Plus
CG12746-PD 363 CG12746-PD 1..143 50..192 738 100 Plus
CG12746-PB 363 CG12746-PB 1..143 50..192 738 100 Plus
CG12746-PE 363 CG12746-PE 255..363 192..300 601 100 Plus
CG12746-PD 363 CG12746-PD 255..363 192..300 601 100 Plus
CG12746-PB 363 CG12746-PB 255..363 192..300 601 100 Plus