Clone Sequence Records
BO04445.3prime Sequence
890 bp (806 high quality bases) assembled on 2005-12-01
> BO04445.3prime
ATGGTCTAGAAAGCTTGCGTACCATTTGGACTCCTCCTTGTCAGCGAGCA
GAGGTCTCCGCACCGCATCCCCACCATCGAGATGGTGGGGACCACGACTG
CCATTGTCGTCCTTTCCAGACAGTCGCTGGTACTGGCTTCCCTCTCTGCT
GGGCCACCTGACCAGTGGTATGCCGGCATCAGGGCAGAAGATGGAGGGAT
AGTATTGTGTGTAGCTTATATAGCCTGCAAACAGGCCAATCAGCCCGCCG
ATGGTCACATCCTGCCAGTGGTGGTGGTAGTCGCAGGTGCGACTAACTGC
AACCAGCAGTGCGATAAACAGAGGTATCACAGCGATGCAGAGCCGCCTGT
CTCTTGTGTACCAGTAGAAGGCGATAGTGACCAGAAAGGGAGCCACTATC
ACCCAGAAGAGCAGCTCCCCGCCCCTGACAATGTCCGGTCGCCTTGGGTT
CTTGTATAGCCACAGCTCTTCCTCGTGGATTTCCCGTTTGAATGCTGTCA
TCGTCTCCAACTTGAAGAAGGTAATGACGAGGAGAACGCGAAGAACAACA
TCTACGGCATCGCTGAGCTTCGCATTAGAGTTTCCTGTTCTGTGGCTTCG
TTCCTCTCGCTTTTCTGGCTGAACGGAGCTGCTGTCCGTGTTCATAGCAA
GTTCATTGCGCCACATTTCGTCGTCGTTGGTCCTGGTCCTCGATCCTGTA
TTCCTGACGTCCTCTGCGGAACTGTCGCTGAGGGTTCGCCTGGATTCTTG
ACCTTCCTTGCTCGCAGTCATTTCGTTAGTCCGTTGGGTATATTCGGTTG
TCAGCTTANGCCTGGTGCTTGTCGCCTGCTCCTTGCCTGTGCCGCCAATA
TTGCCGTTGCGGTCGATTGGATTTTCGCGGCGGCGACTTC
BO04445.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:05:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12746-PA | 903 | CG12746-RA | 29..900 | 890..19 | 4341 | 99.8 | Minus |
CG12746-PC | 1239 | CG12746-RC | 29..576 | 890..343 | 2721 | 99.8 | Minus |
CG12746-PB | 1092 | CG12746-RB | 1..429 | 771..343 | 2145 | 100 | Minus |
CG12746-PD | 1092 | CG12746-RD | 1..429 | 771..343 | 2145 | 100 | Minus |
CG12746-PC | 1239 | CG12746-RC | 908..1236 | 347..19 | 1645 | 100 | Minus |
CG12746-PB | 1092 | CG12746-RB | 761..1089 | 347..19 | 1645 | 100 | Minus |
CG12746-PD | 1092 | CG12746-RD | 761..1089 | 347..19 | 1645 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:20:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12746-RE | 1509 | CG12746-RE | 224..771 | 890..343 | 2729 | 99.8 | Minus |
CG12746-RD | 1381 | CG12746-RD | 161..643 | 825..343 | 2404 | 99.8 | Minus |
CG12746-RB | 1339 | CG12746-RB | 119..601 | 825..343 | 2404 | 99.8 | Minus |
CG12746-RE | 1509 | CG12746-RE | 1103..1431 | 347..19 | 1645 | 100 | Minus |
CG12746-RD | 1381 | CG12746-RD | 975..1303 | 347..19 | 1645 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:20:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 5567029..5567357 | 347..19 | 1645 | 100 | Minus |
3R | 32079331 | 3R | 5566086..5566398 | 827..515 | 1554 | 99.7 | Minus |
3R | 32079331 | 3R | 5566467..5566638 | 514..343 | 860 | 100 | Minus |
3R | 32079331 | 3R | 5565389..5565454 | 890..825 | 330 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 17:20:05 has no hits.
BO04445.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:03:06 Download gff for
BO04445.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12746-PA | 29..903 | 15..890 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:16:17 Download gff for
BO04445.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12746-PA | 29..903 | 15..890 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 02:41:36 Download gff for
BO04445.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12746-RE | 224..773 | 342..890 | 99 | <- | Minus |
CG12746-RE | 1109..1441 | 10..341 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:42:54 Download gff for
BO04445.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12746-RE | 224..773 | 342..890 | 99 | <- | Minus |
CG12746-RE | 1109..1441 | 10..341 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:42:54 Download gff for
BO04445.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 5567030..5567367 | 10..346 | 99 | | Minus |
3R | 5565389..5565453 | 826..890 | 100 | -> | Minus |
3R | 5566088..5566398 | 515..825 | 99 | -> | Minus |
3R | 5566467..5566634 | 347..514 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 02:41:36 Download gff for
BO04445.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 1391111..1391175 | 826..890 | 100 | -> | Minus |
arm_3R | 1392189..1392356 | 347..514 | 100 | -> | Minus |
arm_3R | 1391810..1392120 | 515..825 | 99 | -> | Minus |
arm_3R | 1392752..1393089 | 10..346 | 99 | | Minus |
BO04445.5prime Sequence
924 bp (784 high quality bases) assembled on 2005-11-29
> BO04445.5prime
GAAGTTATCAGTCGACATGCCCGATAGTTGTACGGCGGACCTACGAAGTC
GCCGCCGCGAAAATCCAATCGACCGCAACGGCAATATTGGCGGCACAGGC
AAGGAGCAGGCGACAAGCACCAGGCCTAAGCTGACAACCGAATATACCCA
ACGGACTAACGAAATGACTGCGAGCAAGGAAGGTCAAGAATCCAGGCGAA
CCCTCAGCGACAGTTCCGCAGAGGACGTCAGGAATACAGGATCGAGGACC
AGGACCAACGACGACGAAATGTGGCGCAATGAACTTGCTATGAACACGGA
CAGCAGCTCCGTTCAGCCAGAAAAGCGAGAGGAACGAAGCCACAGAACAG
GAAACTCTAATGCGAAGCTCAGCGATGCCGTAGATGTTGTTCTTCGCGTT
CTCCTCGTCATTACCTTCTTCAAGTTGGAGACGATGACAGCATTCAAACG
GGAAATCCACGAGGAAGAGCTGTGGCTATACAAGAACCCAAGGCGACCGG
ACATTGTCAGGGGCGGGGAGCTGCTCTTCTGGGTGATAGTGGCTCCCTTT
CTGGTCACTATCGCCTTCTACTGGTACACAAGAGACAGGCGGCTCTGCAT
CGCTGTGATACCTCTGTTTATCGCACTGCTGGTTGCAGTTAGTCGCACCT
GCGACTACCACCACCACTGGCAGGATGTGACCATCGGCGGGCTGATTGGC
CTGTTTGCAGGCTATATAAGCTACACACAATACTATCCCTCCATCTTCTG
CCCTGATGCCGGCATACCACTGGTCAGGTGGCCCAGCAGAGAGGGAAGCC
AGTACCAGCGACTGTCTGGAAAGGACGACAATGGCAGTCGTGGTCCCCAC
CATCTCGATGGTGGGGATGCGGTGCGGAGACCTCTGCTCGCTGACAAGGA
GGAGTCCAAATGGTACGCAAGCTT
BO04445.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:05:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12746-PA | 903 | CG12746-RA | 1..900 | 17..916 | 4500 | 100 | Plus |
CG12746-PC | 1239 | CG12746-RC | 1..576 | 17..592 | 2880 | 100 | Plus |
CG12746-PB | 1092 | CG12746-RB | 1..429 | 164..592 | 2145 | 100 | Plus |
CG12746-PD | 1092 | CG12746-RD | 1..429 | 164..592 | 2145 | 100 | Plus |
CG12746-PC | 1239 | CG12746-RC | 908..1236 | 588..916 | 1645 | 100 | Plus |
CG12746-PB | 1092 | CG12746-RB | 761..1089 | 588..916 | 1645 | 100 | Plus |
CG12746-PD | 1092 | CG12746-RD | 761..1089 | 588..916 | 1645 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:34:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12746-RE | 1509 | CG12746-RE | 196..771 | 17..592 | 2880 | 100 | Plus |
CG12746-RD | 1381 | CG12746-RD | 161..643 | 110..592 | 2415 | 100 | Plus |
CG12746-RB | 1339 | CG12746-RB | 119..601 | 110..592 | 2415 | 100 | Plus |
CG12746-RE | 1509 | CG12746-RE | 1103..1431 | 588..916 | 1645 | 100 | Plus |
CG12746-RD | 1381 | CG12746-RD | 975..1303 | 588..916 | 1645 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:33:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 5567029..5567357 | 588..916 | 1645 | 100 | Plus |
3R | 32079331 | 3R | 5566086..5566398 | 108..420 | 1565 | 100 | Plus |
3R | 32079331 | 3R | 5566467..5566638 | 421..592 | 860 | 100 | Plus |
3R | 32079331 | 3R | 5565361..5565454 | 17..110 | 470 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 15:34:00 has no hits.
BO04445.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:03:07 Download gff for
BO04445.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12746-PA | 1..903 | 17..920 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:16:18 Download gff for
BO04445.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12746-PA | 1..903 | 17..920 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:33:25 Download gff for
BO04445.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12746-RE | 190..773 | 11..593 | 99 | <- | Plus |
CG12746-RE | 1109..1440 | 594..924 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:29:00 Download gff for
BO04445.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12746-RE | 190..773 | 11..593 | 99 | <- | Plus |
CG12746-RE | 1109..1440 | 594..924 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:29:00 Download gff for
BO04445.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 5567030..5567366 | 589..924 | 99 | | Plus |
3R | 5565355..5565453 | 11..109 | 97 | -> | Plus |
3R | 5566088..5566398 | 110..420 | 100 | -> | Plus |
3R | 5566467..5566634 | 421..588 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:33:25 Download gff for
BO04445.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 1391077..1391175 | 11..109 | 97 | -> | Plus |
arm_3R | 1391810..1392120 | 110..420 | 100 | -> | Plus |
arm_3R | 1392189..1392356 | 421..588 | 100 | -> | Plus |
arm_3R | 1392752..1393088 | 589..924 | 99 | | Plus |
BO04445.complete Sequence
934 bp (934 high quality bases) assembled on 2005-09-08
GenBank Submission: FJ629766
> BO04445.complete
GAAGTTATCAGTCGACATGCCCGATAGTTGTACGGCGGACCTACGAAGTC
GCCGCCGCGAAAATCCAATCGACCGCAACGGCAATATTGGCGGCACAGGC
AAGGAGCAGGCGACAAGCACCAGGCCTAAGCTGACAACCGAATATACCCA
ACGGACTAACGAAATGACTGCGAGCAAGGAAGGTCAAGAATCCAGGCGAA
CCCTCAGCGACAGTTCCGCAGAGGACGTCAGGAATACAGGATCGAGGACC
AGGACCAACGACGACGAAATGTGGCGCAATGAACTTGCTATGAACACGGA
CAGCAGCTCCGTTCAGCCAGAAAAGCGAGAGGAACGAAGCCACAGAACAG
GAAACTCTAATGCGAAGCTCAGCGATGCCGTAGATGTTGTTCTTCGCGTT
CTCCTCGTCATTACCTTCTTCAAGTTGGAGACGATGACAGCATTCAAACG
GGAAATCCACGAGGAAGAGCTGTGGCTATACAAGAACCCAAGGCGACCGG
ACATTGTCAGGGGCGGGGAGCTGCTCTTCTGGGTGATAGTGGCTCCCTTT
CTGGTCACTATCGCCTTCTACTGGTACACAAGAGACAGGCGGCTCTGCAT
CGCTGTGATACCTCTGTTTATCGCACTGCTGGTTGCAGTTAGTCGCACCT
GCGACTACCACCACCACTGGCAGGATGTGACCATCGGCGGGCTGATTGGC
CTGTTTGCAGGCTATATAAGCTACACACAATACTATCCCTCCATCTTCTG
CCCTGATGCCGGCATACCACTGGTCAGGTGGCCCAGCAGAGAGGGAAGCC
AGTACCAGCGACTGTCTGGAAAGGACGACAATGGCAGTCGTGGTCCCCAC
CATCTCGATGGTGGGGATGCGGTGCGGAGACCTCTGCTCGCTGACAAGGA
GGAGTCCAAATGGTACGCAAGCTTTCTAGACCAT
BO04445.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:14:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12746-RE | 1092 | CG12746-PE | 1..429 | 164..592 | 2145 | 100 | Plus |
CG12746-RD | 1092 | CG12746-PD | 1..429 | 164..592 | 2145 | 100 | Plus |
CG12746-RB | 1092 | CG12746-PB | 1..429 | 164..592 | 2145 | 100 | Plus |
CG12746-RE | 1092 | CG12746-PE | 761..1089 | 588..916 | 1645 | 100 | Plus |
CG12746-RD | 1092 | CG12746-PD | 761..1089 | 588..916 | 1645 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:14:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12746-RE | 1509 | CG12746-RE | 196..771 | 17..592 | 2880 | 100 | Plus |
CG12746-RD | 1381 | CG12746-RD | 161..643 | 110..592 | 2415 | 100 | Plus |
CG12746-RB | 1339 | CG12746-RB | 119..601 | 110..592 | 2415 | 100 | Plus |
CG12746-RE | 1509 | CG12746-RE | 1103..1431 | 588..916 | 1645 | 100 | Plus |
CG12746-RD | 1381 | CG12746-RD | 975..1303 | 588..916 | 1645 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:14:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 5567029..5567357 | 588..916 | 1645 | 100 | Plus |
3R | 32079331 | 3R | 5566086..5566398 | 108..420 | 1565 | 100 | Plus |
3R | 32079331 | 3R | 5566467..5566638 | 421..592 | 860 | 100 | Plus |
3R | 32079331 | 3R | 5565361..5565454 | 17..110 | 470 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 08:14:10 has no hits.
BO04445.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:40:55 Download gff for
BO04445.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12746-RE | 1..431 | 164..593 | 99 | <- | Plus |
CG12746-RE | 767..1092 | 594..920 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:10:29 Download gff for
BO04445.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12746-RE | 190..773 | 11..593 | 99 | <- | Plus |
CG12746-RE | 1109..1441 | 594..925 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:09:01 Download gff for
BO04445.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12746-RE | 196..773 | 17..593 | 99 | <- | Plus |
CG12746-RE | 1109..1431 | 594..918 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:40:56 Download gff for
BO04445.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12746-RE | 190..773 | 11..593 | 99 | <- | Plus |
CG12746-RE | 1109..1441 | 594..925 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:13:42 Download gff for
BO04445.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12746-RE | 196..773 | 17..593 | 99 | <- | Plus |
CG12746-RE | 1109..1431 | 594..918 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:13:42 Download gff for
BO04445.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 5566467..5566634 | 421..588 | 100 | -> | Plus |
3R | 5567030..5567357 | 589..918 | 99 | | Plus |
3R | 5565361..5565453 | 17..109 | 100 | -> | Plus |
3R | 5566088..5566398 | 110..420 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:09:01 Download gff for
BO04445.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 1391083..1391175 | 17..109 | 100 | -> | Plus |
arm_3R | 1391810..1392120 | 110..420 | 100 | -> | Plus |
arm_3R | 1392189..1392356 | 421..588 | 100 | -> | Plus |
arm_3R | 1392752..1393079 | 589..918 | 99 | | Plus |
BO04445.pep Sequence
Translation from 16 to 934
> BO04445.pep
MPDSCTADLRSRRRENPIDRNGNIGGTGKEQATSTRPKLTTEYTQRTNEM
TASKEGQESRRTLSDSSAEDVRNTGSRTRTNDDEMWRNELAMNTDSSSVQ
PEKREERSHRTGNSNAKLSDAVDVVLRVLLVITFFKLETMTAFKREIHEE
ELWLYKNPRRPDIVRGGELLFWVIVAPFLVTIAFYWYTRDRRLCIAVIPL
FIALLVAVSRTCDYHHHWQDVTIGGLIGLFAGYISYTQYYPSIFCPDAGI
PLVRWPSREGSQYQRLSGKDDNGSRGPHHLDGGDAVRRPLLADKEESKWY
ASFLDH
BO04445.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:31:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12746-PE | 363 | CG12746-PE | 1..143 | 50..192 | 738 | 100 | Plus |
CG12746-PD | 363 | CG12746-PD | 1..143 | 50..192 | 738 | 100 | Plus |
CG12746-PB | 363 | CG12746-PB | 1..143 | 50..192 | 738 | 100 | Plus |
CG12746-PE | 363 | CG12746-PE | 255..363 | 192..300 | 601 | 100 | Plus |
CG12746-PD | 363 | CG12746-PD | 255..363 | 192..300 | 601 | 100 | Plus |
CG12746-PB | 363 | CG12746-PB | 255..363 | 192..300 | 601 | 100 | Plus |