Clone BO04446 Report

Search the DGRC for BO04446

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:44
Well:46
Vector:pDNR-Dual
Associated Gene/Transcriptcav-RA
Protein status:BO04446.pep: validated full length
Sequenced Size:1069

Clone Sequence Records

BO04446.3prime Sequence

891 bp (867 high quality bases) assembled on 2005-12-01

> BO04446.3prime
ATGGTCTAGAAAGCTTGCGGCTATTGAGGTGACGTCGATCGGCTCAGATT
CTGTATTTTGAAAAGTGATAGTTCCTTCCGAATCAATTGACGGTCCAATC
GACAAGCTTTCCGAATTAATTTGATCACACCTTACCCAGCTCTCATTCAT
CTCTGTCTCTGGACAGTTTACCTGATCGTCAGGCTCTTGAGTCGACGTGG
GTCGTACTAATGTGCTCAATTGGGTGCCAAACATATAGTAGTCCGGATCA
GACTCCGTATTCCGGAAACTGTTATTTGCTTGCGAATTTATACATCCAGT
CCGCATCCTTCCTAAATTAATTGGATCACATCTCACCGAATTCTCATTAA
TCTCTGTCTCTGGACGGTTGATGTTCTCATCCTGAAATCCTGACTGCTGC
TGTTCGTCCTCATCGTCTCCGATGCCGCTAAGATCAGATGACGACACGCC
TGGCGGAGCCATCGCTTCCACTTGAAAGTTCATTTGAGACAGTGAACTAA
GATTTGTGTTTGCTTGGTCCTCGTGGCTCTGCACCGCGTCATTAGAAGAT
GCATGAGCGTCTGGAGAGGATTCTGGTGCTGATAGGTTTTGACTCTTTTT
CTTTTGCCATCTATCCAATCGGCTGATGTTCTGCTTCTTAGTCTCGGCTG
CAACTATTTCTCTTCGCTGGGCCACAAACTCCTCCGGATACGGTTGGACC
ATCTTTCTGCGCACCGCTTTCATATACATTCGGTTGATGAATCTCTCAGA
CTTGTTCACAAAACGTCCTTTTGCTTCAAACCTCTTTTTGGCTTCCCACA
GACAATTCCAAGCGGTCATATCAACCTTCACTTTGGTGCGTAGACAAAGC
TCCTTTACCTCGTCCTCGGTGTATGGGCGTGCCAAGTCCTC

BO04446.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:05:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG6219-PE 1032 cav-RE 157..1029 891..19 4365 100 Minus
CG6219-PD 1014 cav-RD 139..1011 891..19 4365 100 Minus
CG6219-PA 1038 cav-RA 163..1035 891..19 4365 100 Minus
CG6219-PB 1014 cav-RB 139..1011 891..19 4365 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 05:34:29
Subject Length Description Subject Range Query Range Score Percent Strand
cav-RB 1226 CG6219-RB 246..1118 891..19 4365 100 Minus
cav-RA 1520 CG6219-RA 540..1412 891..19 4365 100 Minus
cav-RD 1649 CG6219-RD 669..1541 891..19 4365 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 05:34:27
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 24222548..24223420 891..19 4365 100 Minus
Blast to na_te.dros performed on 2015-02-13 05:34:28 has no hits.

BO04446.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:03:08 Download gff for BO04446.3prime
Subject Subject Range Query Range Percent Splice Strand
cav-PA 163..1038 16..891 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:16:20 Download gff for BO04446.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6219-PB 139..1014 16..891 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 17:53:58 Download gff for BO04446.3prime
Subject Subject Range Query Range Percent Splice Strand
cav-RD 669..1541 19..891 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:47:47 Download gff for BO04446.3prime
Subject Subject Range Query Range Percent Splice Strand
cav-RD 669..1541 19..891 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 07:47:47 Download gff for BO04446.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 24222548..24223419 20..891 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 17:53:58 Download gff for BO04446.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 20048270..20049141 20..891 100 <- Minus

BO04446.5prime Sequence

891 bp (793 high quality bases) assembled on 2005-12-01

> BO04446.5prime
GAAGTTATCAGTCGACATGCTGCTGCTACTATGTGTTAATATGTCGGGGA
CGCAAATGTCTGCCTTCCTGAGAAAGTATCTAGCCGACGAGGACAAAAAA
ATTCGTGCGCAATTCAAAGAAAGCGATCCTAACAACAAATTGATTCTATG
GATGCACGAAAAAACGAGAATAACCGAGGAGGACTTGGCACGCCCATACA
CCGAGGACGAGGTAAAGGAGCTTTGTCTACGCACCAAAGTGAAGGTTGAT
ATGACCGCTTGGAATTGTCTGTGGGAAGCCAAAAAGAGGTTTGAAGCAAA
AGGACGTTTTGTGAACAAGTCTGAGAGATTCATCAACCGAATGTATATGA
AAGCGGTGCGCAGAAAGATGGTCCAACCGTATCCGGAGGAGTTTGTGGCC
CAGCGAAGAGAAATAGTTGCAGCCGAGACTAAGAAGCAGAACATCAGCCG
ATTGGATAGATGGCAAAAGAAAAAGAGTCAAAACCTATCAGCACCAGAAT
CCTCTCCAGACGCTCATGCATCTTCTAATGACGCGGTGCAGAGCCACGAG
GACCAAGCAAACACAAATCTTAGTTCACTGTCTCAAATGAACTTTCAAGT
GGAAGCGATGGCTCCGCCAGGCGTGTCGTCATCTGATCTTAGCGGCATCG
GAGACGATGAGGACGAACAGCAGCAGTCAGGATTTCAGGATGAGAACATC
AACCGTCCAGAGACAGAGATTAATGAGAATTCGGTGAGATGTGATCCAAT
TAATTTAGGAAGGATGCGGACTGGATGTATAAATTCGCAAGCAAATAACA
GTTTCCGGAATACGGAGTCTGATCCGGACTACTATATGTTTGGCACCCAT
TTGAGCACATTAGTACGACCCACGTCGACTCAAGAGCCTGA

BO04446.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:05:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG6219-PA 1038 cav-RA 1..875 17..891 4350 99.8 Plus
CG6219-PE 1032 cav-RE 13..869 35..891 4260 99.8 Plus
CG6219-PD 1014 cav-RD 1..851 41..891 4230 99.8 Plus
CG6219-PB 1014 cav-RB 1..851 41..891 4230 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 13:23:22
Subject Length Description Subject Range Query Range Score Percent Strand
cav-RA 1520 CG6219-RA 378..1252 17..891 4360 99.9 Plus
cav-RD 1649 CG6219-RD 523..1381 33..891 4280 99.9 Plus
cav-RB 1226 CG6219-RB 102..958 35..891 4270 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 13:23:20
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 24222535..24223260 166..891 3615 99.9 Plus
3R 32079331 3R 24222343..24222474 35..166 660 100 Plus
Blast to na_te.dros performed on 2015-02-13 13:23:21 has no hits.

BO04446.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:03:09 Download gff for BO04446.5prime
Subject Subject Range Query Range Percent Splice Strand
cav-PA 1..874 17..890 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:16:21 Download gff for BO04446.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6219-PA 1..874 17..890 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 17:41:37 Download gff for BO04446.5prime
Subject Subject Range Query Range Percent Splice Strand
cav-RA 378..1251 17..890 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:53:27 Download gff for BO04446.5prime
Subject Subject Range Query Range Percent Splice Strand
cav-RA 378..1251 17..890 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 15:53:27 Download gff for BO04446.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 24221908..24221925 17..34 100 -> Plus
3R 24222343..24222474 35..166 100 -> Plus
3R 24222536..24223259 167..890 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 17:41:37 Download gff for BO04446.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 20047630..20047647 17..34 100 -> Plus
arm_3R 20048065..20048196 35..166 100 -> Plus
arm_3R 20048258..20048981 167..890 99   Plus

BO04446.complete Sequence

1069 bp (1069 high quality bases) assembled on 2005-10-17

GenBank Submission: FJ629767

> BO04446.complete
GAAGTTATCAGTCGACATGCTGCTGCTACTATGTGTTAATATGTCGGGGA
CGCAAATGTCTGCCTTCCTGAGAAAGTATCTAGCCGACGAGGACAAAAAA
ATTCGTGCGCAATTCAAAGAAAGCGATCCTAACAACAAATTGATTCTATG
GATGCACGAAAAAACGAGAATAACCGAGGAGGACTTGGCACGCCCATACA
CCGAGGACGAGGTAAAGGAGCTTTGTCTACGCACCAAAGTGAAGGTTGAT
ATGACCGCTTGGAATTGTCTGTGGGAAGCCAAAAAGAGGTTTGAAGCAAA
AGGACGTTTTGTGAACAAGTCTGAGAGATTCATCAACCGAATGTATATGA
AAGCGGTGCGCAGAAAGATGGTCCAACCGTATCCGGAGGAGTTTGTGGCC
CAGCGAAGAGAAATAGTTGCAGCCGAGACTAAGAAGCAGAACATCAGCCG
ATTGGATAGATGGCAAAAGAAAAAGAGTCAAAACCTATCAGCACCAGAAT
CCTCTCCAGACGCTCATGCATCTTCTAATGACGCGGTGCAGAGCCACGAG
GACCAAGCAAACACAAATCTTAGTTCACTGTCTCAAATGAACTTTCAAGT
GGAAGCGATGGCTCCGCCAGGCGTGTCGTCATCTGATCTTAGCGGCATCG
GAGACGATGAGGACGAACAGCAGCAGTCAGGATTTCAGGATGAGAACATC
AACCGTCCAGAGACAGAGATTAATGAGAATTCGGTGAGATGTGATCCAAT
TAATTTAGGAAGGATGCGGACTGGATGTATAAATTCGCAAGCAAATAACA
GTTTCCGGAATACGGAGTCTGATCCGGACTACTATATGTTTGGCACCCAA
TTGAGCACATTAGTACGACCCACGTCGACTCAAGAGCCTGACGATCAGGT
AAACTGTCCAGAGACAGAGATGAATGAGAGCTGGGTAAGGTGTGATCAAA
TTAATTCGGAAAGCTTGTCGATTGGACCGTCAATTGATTCGGAAGGAACT
ATCACTTTTCAAAATACAGAATCTGAGCCGATCGACGTCACCTCAATAGC
CGCAAGCTTTCTAGACCAT

BO04446.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:44:45
Subject Length Description Subject Range Query Range Score Percent Strand
cav-RA 1038 CG6219-PA 1..1035 17..1051 5175 100 Plus
cav-RE 1032 CG6219-PE 13..1029 35..1051 5085 100 Plus
cav-RB 1014 CG6219-PB 1..1011 41..1051 5055 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:44:46
Subject Length Description Subject Range Query Range Score Percent Strand
cav-RA 1520 CG6219-RA 378..1412 17..1051 5175 100 Plus
cav-RD 1649 CG6219-RD 523..1541 33..1051 5095 100 Plus
cav-RB 1226 CG6219-RB 102..1118 35..1051 5085 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 12:44:43
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 24222535..24223420 166..1051 4430 100 Plus
3R 32079331 3R 24222343..24222474 35..166 660 100 Plus
Blast to na_te.dros performed on 2014-11-27 12:44:44 has no hits.

BO04446.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:32:01 Download gff for BO04446.complete
Subject Subject Range Query Range Percent Splice Strand
cav-RA 1..1038 17..1054 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:59:03 Download gff for BO04446.complete
Subject Subject Range Query Range Percent Splice Strand
cav-RA 384..1418 17..1051 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 11:31:01 Download gff for BO04446.complete
Subject Subject Range Query Range Percent Splice Strand
cav-RA 378..1412 17..1053 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:32:01 Download gff for BO04446.complete
Subject Subject Range Query Range Percent Splice Strand
cav-RA 384..1418 17..1051 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:03:34 Download gff for BO04446.complete
Subject Subject Range Query Range Percent Splice Strand
cav-RA 378..1412 17..1053 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:03:34 Download gff for BO04446.complete
Subject Subject Range Query Range Percent Splice Strand
3R 24221908..24221925 17..34 100 -> Plus
3R 24222343..24222474 35..166 100 -> Plus
3R 24222536..24223420 167..1053 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 11:31:01 Download gff for BO04446.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 20047630..20047647 17..34 100 -> Plus
arm_3R 20048065..20048196 35..166 100 -> Plus
arm_3R 20048258..20049142 167..1053 99   Plus

BO04446.pep Sequence

Translation from 16 to 1069

> BO04446.pep
MLLLLCVNMSGTQMSAFLRKYLADEDKKIRAQFKESDPNNKLILWMHEKT
RITEEDLARPYTEDEVKELCLRTKVKVDMTAWNCLWEAKKRFEAKGRFVN
KSERFINRMYMKAVRRKMVQPYPEEFVAQRREIVAAETKKQNISRLDRWQ
KKKSQNLSAPESSPDAHASSNDAVQSHEDQANTNLSSLSQMNFQVEAMAP
PGVSSSDLSGIGDDEDEQQQSGFQDENINRPETEINENSVRCDPINLGRM
RTGCINSQANNSFRNTESDPDYYMFGTQLSTLVRPTSTQEPDDQVNCPET
EMNESWVRCDQINSESLSIGPSIDSEGTITFQNTESEPIDVTSIAASFLD
H

BO04446.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:36:33
Subject Length Description Subject Range Query Range Score Percent Strand
cav-PA 345 CG6219-PA 1..345 1..345 1797 100 Plus
cav-PE 343 CG6219-PE 5..343 7..345 1767 100 Plus
cav-PB 337 CG6219-PB 1..337 9..345 1757 100 Plus
cav-PD 337 CG6219-PD 1..337 9..345 1757 100 Plus