Clone Sequence Records
BO04446.3prime Sequence
891 bp (867 high quality bases) assembled on 2005-12-01
> BO04446.3prime
ATGGTCTAGAAAGCTTGCGGCTATTGAGGTGACGTCGATCGGCTCAGATT
CTGTATTTTGAAAAGTGATAGTTCCTTCCGAATCAATTGACGGTCCAATC
GACAAGCTTTCCGAATTAATTTGATCACACCTTACCCAGCTCTCATTCAT
CTCTGTCTCTGGACAGTTTACCTGATCGTCAGGCTCTTGAGTCGACGTGG
GTCGTACTAATGTGCTCAATTGGGTGCCAAACATATAGTAGTCCGGATCA
GACTCCGTATTCCGGAAACTGTTATTTGCTTGCGAATTTATACATCCAGT
CCGCATCCTTCCTAAATTAATTGGATCACATCTCACCGAATTCTCATTAA
TCTCTGTCTCTGGACGGTTGATGTTCTCATCCTGAAATCCTGACTGCTGC
TGTTCGTCCTCATCGTCTCCGATGCCGCTAAGATCAGATGACGACACGCC
TGGCGGAGCCATCGCTTCCACTTGAAAGTTCATTTGAGACAGTGAACTAA
GATTTGTGTTTGCTTGGTCCTCGTGGCTCTGCACCGCGTCATTAGAAGAT
GCATGAGCGTCTGGAGAGGATTCTGGTGCTGATAGGTTTTGACTCTTTTT
CTTTTGCCATCTATCCAATCGGCTGATGTTCTGCTTCTTAGTCTCGGCTG
CAACTATTTCTCTTCGCTGGGCCACAAACTCCTCCGGATACGGTTGGACC
ATCTTTCTGCGCACCGCTTTCATATACATTCGGTTGATGAATCTCTCAGA
CTTGTTCACAAAACGTCCTTTTGCTTCAAACCTCTTTTTGGCTTCCCACA
GACAATTCCAAGCGGTCATATCAACCTTCACTTTGGTGCGTAGACAAAGC
TCCTTTACCTCGTCCTCGGTGTATGGGCGTGCCAAGTCCTC
BO04446.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:05:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6219-PE | 1032 | cav-RE | 157..1029 | 891..19 | 4365 | 100 | Minus |
CG6219-PD | 1014 | cav-RD | 139..1011 | 891..19 | 4365 | 100 | Minus |
CG6219-PA | 1038 | cav-RA | 163..1035 | 891..19 | 4365 | 100 | Minus |
CG6219-PB | 1014 | cav-RB | 139..1011 | 891..19 | 4365 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 05:34:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
cav-RB | 1226 | CG6219-RB | 246..1118 | 891..19 | 4365 | 100 | Minus |
cav-RA | 1520 | CG6219-RA | 540..1412 | 891..19 | 4365 | 100 | Minus |
cav-RD | 1649 | CG6219-RD | 669..1541 | 891..19 | 4365 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 05:34:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 24222548..24223420 | 891..19 | 4365 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 05:34:28 has no hits.
BO04446.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:03:08 Download gff for
BO04446.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cav-PA | 163..1038 | 16..891 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:16:20 Download gff for
BO04446.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6219-PB | 139..1014 | 16..891 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 17:53:58 Download gff for
BO04446.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cav-RD | 669..1541 | 19..891 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:47:47 Download gff for
BO04446.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cav-RD | 669..1541 | 19..891 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 07:47:47 Download gff for
BO04446.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 24222548..24223419 | 20..891 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 17:53:58 Download gff for
BO04446.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 20048270..20049141 | 20..891 | 100 | <- | Minus |
BO04446.5prime Sequence
891 bp (793 high quality bases) assembled on 2005-12-01
> BO04446.5prime
GAAGTTATCAGTCGACATGCTGCTGCTACTATGTGTTAATATGTCGGGGA
CGCAAATGTCTGCCTTCCTGAGAAAGTATCTAGCCGACGAGGACAAAAAA
ATTCGTGCGCAATTCAAAGAAAGCGATCCTAACAACAAATTGATTCTATG
GATGCACGAAAAAACGAGAATAACCGAGGAGGACTTGGCACGCCCATACA
CCGAGGACGAGGTAAAGGAGCTTTGTCTACGCACCAAAGTGAAGGTTGAT
ATGACCGCTTGGAATTGTCTGTGGGAAGCCAAAAAGAGGTTTGAAGCAAA
AGGACGTTTTGTGAACAAGTCTGAGAGATTCATCAACCGAATGTATATGA
AAGCGGTGCGCAGAAAGATGGTCCAACCGTATCCGGAGGAGTTTGTGGCC
CAGCGAAGAGAAATAGTTGCAGCCGAGACTAAGAAGCAGAACATCAGCCG
ATTGGATAGATGGCAAAAGAAAAAGAGTCAAAACCTATCAGCACCAGAAT
CCTCTCCAGACGCTCATGCATCTTCTAATGACGCGGTGCAGAGCCACGAG
GACCAAGCAAACACAAATCTTAGTTCACTGTCTCAAATGAACTTTCAAGT
GGAAGCGATGGCTCCGCCAGGCGTGTCGTCATCTGATCTTAGCGGCATCG
GAGACGATGAGGACGAACAGCAGCAGTCAGGATTTCAGGATGAGAACATC
AACCGTCCAGAGACAGAGATTAATGAGAATTCGGTGAGATGTGATCCAAT
TAATTTAGGAAGGATGCGGACTGGATGTATAAATTCGCAAGCAAATAACA
GTTTCCGGAATACGGAGTCTGATCCGGACTACTATATGTTTGGCACCCAT
TTGAGCACATTAGTACGACCCACGTCGACTCAAGAGCCTGA
BO04446.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:05:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6219-PA | 1038 | cav-RA | 1..875 | 17..891 | 4350 | 99.8 | Plus |
CG6219-PE | 1032 | cav-RE | 13..869 | 35..891 | 4260 | 99.8 | Plus |
CG6219-PD | 1014 | cav-RD | 1..851 | 41..891 | 4230 | 99.8 | Plus |
CG6219-PB | 1014 | cav-RB | 1..851 | 41..891 | 4230 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 13:23:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
cav-RA | 1520 | CG6219-RA | 378..1252 | 17..891 | 4360 | 99.9 | Plus |
cav-RD | 1649 | CG6219-RD | 523..1381 | 33..891 | 4280 | 99.9 | Plus |
cav-RB | 1226 | CG6219-RB | 102..958 | 35..891 | 4270 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 13:23:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 24222535..24223260 | 166..891 | 3615 | 99.9 | Plus |
3R | 32079331 | 3R | 24222343..24222474 | 35..166 | 660 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 13:23:21 has no hits.
BO04446.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:03:09 Download gff for
BO04446.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cav-PA | 1..874 | 17..890 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:16:21 Download gff for
BO04446.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6219-PA | 1..874 | 17..890 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 17:41:37 Download gff for
BO04446.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cav-RA | 378..1251 | 17..890 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:53:27 Download gff for
BO04446.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cav-RA | 378..1251 | 17..890 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 15:53:27 Download gff for
BO04446.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 24221908..24221925 | 17..34 | 100 | -> | Plus |
3R | 24222343..24222474 | 35..166 | 100 | -> | Plus |
3R | 24222536..24223259 | 167..890 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 17:41:37 Download gff for
BO04446.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 20047630..20047647 | 17..34 | 100 | -> | Plus |
arm_3R | 20048065..20048196 | 35..166 | 100 | -> | Plus |
arm_3R | 20048258..20048981 | 167..890 | 99 | | Plus |
BO04446.complete Sequence
1069 bp (1069 high quality bases) assembled on 2005-10-17
GenBank Submission: FJ629767
> BO04446.complete
GAAGTTATCAGTCGACATGCTGCTGCTACTATGTGTTAATATGTCGGGGA
CGCAAATGTCTGCCTTCCTGAGAAAGTATCTAGCCGACGAGGACAAAAAA
ATTCGTGCGCAATTCAAAGAAAGCGATCCTAACAACAAATTGATTCTATG
GATGCACGAAAAAACGAGAATAACCGAGGAGGACTTGGCACGCCCATACA
CCGAGGACGAGGTAAAGGAGCTTTGTCTACGCACCAAAGTGAAGGTTGAT
ATGACCGCTTGGAATTGTCTGTGGGAAGCCAAAAAGAGGTTTGAAGCAAA
AGGACGTTTTGTGAACAAGTCTGAGAGATTCATCAACCGAATGTATATGA
AAGCGGTGCGCAGAAAGATGGTCCAACCGTATCCGGAGGAGTTTGTGGCC
CAGCGAAGAGAAATAGTTGCAGCCGAGACTAAGAAGCAGAACATCAGCCG
ATTGGATAGATGGCAAAAGAAAAAGAGTCAAAACCTATCAGCACCAGAAT
CCTCTCCAGACGCTCATGCATCTTCTAATGACGCGGTGCAGAGCCACGAG
GACCAAGCAAACACAAATCTTAGTTCACTGTCTCAAATGAACTTTCAAGT
GGAAGCGATGGCTCCGCCAGGCGTGTCGTCATCTGATCTTAGCGGCATCG
GAGACGATGAGGACGAACAGCAGCAGTCAGGATTTCAGGATGAGAACATC
AACCGTCCAGAGACAGAGATTAATGAGAATTCGGTGAGATGTGATCCAAT
TAATTTAGGAAGGATGCGGACTGGATGTATAAATTCGCAAGCAAATAACA
GTTTCCGGAATACGGAGTCTGATCCGGACTACTATATGTTTGGCACCCAA
TTGAGCACATTAGTACGACCCACGTCGACTCAAGAGCCTGACGATCAGGT
AAACTGTCCAGAGACAGAGATGAATGAGAGCTGGGTAAGGTGTGATCAAA
TTAATTCGGAAAGCTTGTCGATTGGACCGTCAATTGATTCGGAAGGAACT
ATCACTTTTCAAAATACAGAATCTGAGCCGATCGACGTCACCTCAATAGC
CGCAAGCTTTCTAGACCAT
BO04446.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:44:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
cav-RA | 1038 | CG6219-PA | 1..1035 | 17..1051 | 5175 | 100 | Plus |
cav-RE | 1032 | CG6219-PE | 13..1029 | 35..1051 | 5085 | 100 | Plus |
cav-RB | 1014 | CG6219-PB | 1..1011 | 41..1051 | 5055 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:44:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
cav-RA | 1520 | CG6219-RA | 378..1412 | 17..1051 | 5175 | 100 | Plus |
cav-RD | 1649 | CG6219-RD | 523..1541 | 33..1051 | 5095 | 100 | Plus |
cav-RB | 1226 | CG6219-RB | 102..1118 | 35..1051 | 5085 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 12:44:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 24222535..24223420 | 166..1051 | 4430 | 100 | Plus |
3R | 32079331 | 3R | 24222343..24222474 | 35..166 | 660 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 12:44:44 has no hits.
BO04446.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:32:01 Download gff for
BO04446.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cav-RA | 1..1038 | 17..1054 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:59:03 Download gff for
BO04446.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cav-RA | 384..1418 | 17..1051 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 11:31:01 Download gff for
BO04446.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cav-RA | 378..1412 | 17..1053 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:32:01 Download gff for
BO04446.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cav-RA | 384..1418 | 17..1051 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:03:34 Download gff for
BO04446.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cav-RA | 378..1412 | 17..1053 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:03:34 Download gff for
BO04446.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 24221908..24221925 | 17..34 | 100 | -> | Plus |
3R | 24222343..24222474 | 35..166 | 100 | -> | Plus |
3R | 24222536..24223420 | 167..1053 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 11:31:01 Download gff for
BO04446.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 20047630..20047647 | 17..34 | 100 | -> | Plus |
arm_3R | 20048065..20048196 | 35..166 | 100 | -> | Plus |
arm_3R | 20048258..20049142 | 167..1053 | 99 | | Plus |
BO04446.pep Sequence
Translation from 16 to 1069
> BO04446.pep
MLLLLCVNMSGTQMSAFLRKYLADEDKKIRAQFKESDPNNKLILWMHEKT
RITEEDLARPYTEDEVKELCLRTKVKVDMTAWNCLWEAKKRFEAKGRFVN
KSERFINRMYMKAVRRKMVQPYPEEFVAQRREIVAAETKKQNISRLDRWQ
KKKSQNLSAPESSPDAHASSNDAVQSHEDQANTNLSSLSQMNFQVEAMAP
PGVSSSDLSGIGDDEDEQQQSGFQDENINRPETEINENSVRCDPINLGRM
RTGCINSQANNSFRNTESDPDYYMFGTQLSTLVRPTSTQEPDDQVNCPET
EMNESWVRCDQINSESLSIGPSIDSEGTITFQNTESEPIDVTSIAASFLD
H
BO04446.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:36:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
cav-PA | 345 | CG6219-PA | 1..345 | 1..345 | 1797 | 100 | Plus |
cav-PE | 343 | CG6219-PE | 5..343 | 7..345 | 1767 | 100 | Plus |
cav-PB | 337 | CG6219-PB | 1..337 | 9..345 | 1757 | 100 | Plus |
cav-PD | 337 | CG6219-PD | 1..337 | 9..345 | 1757 | 100 | Plus |