Clone Sequence Records
BO04448.3prime Sequence
891 bp (844 high quality bases) assembled on 2005-12-01
> BO04448.3prime
ATGGTCTAGAAAGCTTGCGTAGGAGGCCAGGCACTGCAAGACGTAGCTGT
AGTCTCCGGAGAGGTCGTCCTTGATCCAGGACTCCAAGCTCTTGCCGTAC
TTGTTCTGGAATGCCTCCTTGATGTCACCCAGATCGATCTCCGACCGGCT
GACAATGATGCGGATCAGCGTCTTGTCCTTGGTGCCCATGCCGGCCATTG
AGTCGTGCAGGCGCTCCGAAAAGTAGTCGATCTTGGACTTGCAGCACTTG
ACGATGGCCAGGAAACCCTTCTCCACGGAGCCGCTAAACTCCCGCTTGAT
GGCCTTCTCGATGTCGTTGCCCGACAGATTCTCGTATTCGAGGAAGATCT
GGCGCAGCTGCTGGTAGGAGCGGGTGATCAGGATCGAGTTGAAGGTGGAC
TCATCTGTGCCCCACTGTCCCTCGCCGGCGTCGTGCAGAGCCTGGGCATC
GGCGATGGCCGCGGCCTCGTCCACGCCCTGGTTCTCATCCCGGTTGCCCT
GGACGAGCGAGACACACAGCCGCTTGAAGTGGCCACTGGTGTCGCCCTTC
AGGTCGGACTCTAGGGACTTGCCGAAGCTCTGCTCGTAGAACTGGGCAAT
GGTCTTGATGCCGTAGTTGGACAGCGTGCAGAGGATCTCGATGATGGCCT
CCTCGTCGGTTCCCAGTCCCGAGATGGCGTCGTGCAGCTCCTGGGCATAG
AACTGGGGCAGCGGCGTCATCAGAGCCAGGATAACATCCTCGAATTTGCC
GCCCAGTTCGGACTTGAGGTCCGAGATCAGGTCCTTGCCGTACGAGGTCT
TGAACGCCTCAGCGATCTCCAAACGCTGGACGATGCCACGCCTGGCCAGG
ATCTCCATGATGGCCTTCTCGTCGGTGCCGAAGCCTTTCAT
BO04448.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:05:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5730-PD | 975 | AnnIX-RD | 100..972 | 891..19 | 4340 | 99.8 | Minus |
CG5730-PB | 975 | AnnIX-RB | 100..972 | 891..19 | 4340 | 99.8 | Minus |
CG5730-PA | 975 | AnnIX-RA | 100..923 | 891..68 | 4095 | 99.8 | Minus |
CG5730-PC | 975 | AnnIX-RC | 100..922 | 891..69 | 4090 | 99.8 | Minus |
CG9968-PA | 969 | Anxb11-RA | 307..357 | 666..616 | 180 | 94.1 | Minus |
CG9968-PB | 1536 | Anxb11-RB | 874..924 | 666..616 | 180 | 94.1 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 16:04:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
AnxB9-RB | 1184 | CG5730-RB | 169..1041 | 891..19 | 4350 | 99.9 | Minus |
AnxB9-RD | 1300 | CG5730-RD | 285..1157 | 891..19 | 4350 | 99.9 | Minus |
AnxB9-RF | 1457 | CG5730-RF | 194..1020 | 891..65 | 4105 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 16:04:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 21068138..21068777 | 891..252 | 3185 | 99.8 | Minus |
3R | 32079331 | 3R | 21068837..21069020 | 252..69 | 920 | 100 | Minus |
3R | 32079331 | 3R | 21070722..21070774 | 71..19 | 265 | 100 | Minus |
X | 23542271 | X | 16418705..16418779 | 616..690 | 225 | 86.7 | Plus |
Blast to na_te.dros performed on 2015-02-12 16:04:21 has no hits.
BO04448.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:03:12 Download gff for
BO04448.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
AnnIX-PD | 100..975 | 15..891 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:16:26 Download gff for
BO04448.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5730-PB | 100..975 | 15..891 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:29:08 Download gff for
BO04448.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
AnxB9-RD | 285..1167 | 9..891 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:39:54 Download gff for
BO04448.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
AnxB9-RD | 285..1167 | 9..891 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:39:54 Download gff for
BO04448.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 21068138..21068777 | 252..891 | 99 | -> | Minus |
3R | 21068838..21069019 | 70..251 | 100 | -> | Minus |
3R | 21070724..21070784 | 9..69 | 93 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:29:08 Download gff for
BO04448.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 16893860..16894499 | 252..891 | 99 | -> | Minus |
arm_3R | 16894560..16894741 | 70..251 | 100 | -> | Minus |
arm_3R | 16896446..16896506 | 9..69 | 93 | | Minus |
BO04448.5prime Sequence
805 bp (733 high quality bases) assembled on 2005-11-29
> BO04448.5prime
GAAGTTATCAGTCGACATGAGTTCCGCTGAGTACTACCCATTCAAGTGCA
CACCCACTGTCTACCCGGCGGATCCCTTCGATCCCGTCGAGGATGCGGCT
ATTCTGCGCAAGGCGATGAAAGGCTTCGGCACCGACGAGAAGGCCATCAT
CGAGATCCTGGCCAGGCGTGGCATCGTCCAGCGTTTGGAGATCGCTGAGG
CGTTCAAGACCTCGTACGGCAAGGACCTGATCTCGGACCTCAAGTCCGAA
CTGGGCGGCAAATTCGAGGATGTTATCCTGGCTCTGATGACGCCGCTGCC
CCAGTTCTATGCCCAGGAGCTGCACGACGCCATCTCGGGACTGGGAACCG
ACGAGGAGGCCATCATCGAGATCCTCTGCACGCTGTCCAACTACGGCATC
AAGACCATTGCCCAGTTCTACGAGCAGAGCTTCGGCAAGTCCCTAGAGTC
CGACCTGAAGGGCGACACCAGTGGCCACTTCAAGCGGCTGTGTGTCTCGC
TCGTCCAGGGCAACCGGGATGAGAACCAGGGCGTGGACGAGGCCGCGGCC
ATCGCCGATGCCCAGGCTCTGCACGACGCCGGCGAGGGACAGTGGGGCAC
AGATGAGTCCACCTTCAACTCGATCCTGATCACCCGCTCCTACCAGCAGC
TGCGCCAGATCTTCCTCGAATACGAGAATCTGTCGGGCAACGACATCGAG
AAGGCCATCAAGCGGGAGTTTAGCGGCTCCGTGGAGAAGGGTTTCCTGGC
CATCGTCAAGTGCTGCAAGTCCAAGATCGACTACTTTTCGGAGCGCCTGC
ACGAC
BO04448.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:05:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5730-PD | 975 | AnnIX-RD | 1..789 | 17..805 | 3945 | 100 | Plus |
CG5730-PA | 975 | AnnIX-RA | 1..789 | 17..805 | 3945 | 100 | Plus |
CG5730-PB | 975 | AnnIX-RB | 1..789 | 17..805 | 3945 | 100 | Plus |
CG5730-PC | 975 | AnnIX-RC | 1..789 | 17..805 | 3945 | 100 | Plus |
CG9968-PA | 969 | Anxb11-RA | 307..357 | 341..391 | 180 | 94.1 | Plus |
CG9968-PB | 1536 | Anxb11-RB | 874..924 | 341..391 | 180 | 94.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:41:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
AnxB9-RF | 1457 | CG5730-RF | 95..883 | 17..805 | 3945 | 100 | Plus |
AnxB9-RE | 1456 | CG5730-RE | 94..882 | 17..805 | 3945 | 100 | Plus |
AnxB9-RC | 1432 | CG5730-RC | 70..858 | 17..805 | 3945 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:40:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 21068067..21068777 | 45..755 | 3555 | 100 | Plus |
3R | 32079331 | 3R | 21068837..21068887 | 755..805 | 255 | 100 | Plus |
X | 23542271 | X | 16418705..16418779 | 391..317 | 225 | 86.7 | Minus |
Blast to na_te.dros performed on 2015-02-11 23:40:58 has no hits.
BO04448.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:03:13 Download gff for
BO04448.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
AnnIX-PC | 1..789 | 17..805 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:16:27 Download gff for
BO04448.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5730-PC | 1..789 | 17..805 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:36:20 Download gff for
BO04448.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
AnxB9-RC | 62..858 | 9..805 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:52:42 Download gff for
BO04448.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
AnxB9-RC | 62..858 | 9..805 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:52:42 Download gff for
BO04448.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 21067462..21067499 | 9..46 | 92 | -> | Plus |
3R | 21068069..21068777 | 47..755 | 100 | -> | Plus |
3R | 21068838..21068887 | 756..805 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:36:20 Download gff for
BO04448.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 16893184..16893221 | 9..46 | 92 | -> | Plus |
arm_3R | 16893791..16894499 | 47..755 | 100 | -> | Plus |
arm_3R | 16894560..16894609 | 756..805 | 100 | | Plus |
BO04448.complete Sequence
1006 bp (1006 high quality bases) assembled on 2005-09-08
GenBank Submission: FJ629768
> BO04448.complete
GAAGTTATCAGTCGACATGAGTTCCGCTGAGTACTACCCATTCAAGTGCA
CACCCACTGTCTACCCGGCGGATCCCTTCGATCCCGTCGAGGATGCGGCT
ATTCTGCGCAAGGCGATGAAAGGCTTCGGCACCGACGAGAAGGCCATCAT
CGAGATCCTGGCCAGGCGTGGCATCGTCCAGCGTTTGGAGATCGCTGAGG
CGTTCAAGACCTCGTACGGCAAGGACCTGATCTCGGACCTCAAGTCCGAA
CTGGGCGGCAAATTCGAGGATGTTATCCTGGCTCTGATGACGCCGCTGCC
CCAGTTCTATGCCCAGGAGCTGCACGACGCCATCTCGGGACTGGGAACCG
ACGAGGAGGCCATCATCGAGATCCTCTGCACGCTGTCCAACTACGGCATC
AAGACCATTGCCCAGTTCTACGAGCAGAGCTTCGGCAAGTCCCTAGAGTC
CGACCTGAAGGGCGACACCAGTGGCCACTTCAAGCGGCTGTGTGTCTCGC
TCGTCCAGGGCAACCGGGATGAGAACCAGGGCGTGGACGAGGCCGCGGCC
ATCGCCGATGCCCAGGCTCTGCACGACGCCGGCGAGGGACAGTGGGGCAC
AGATGAGTCCACCTTCAACTCGATCCTGATCACCCGCTCCTACCAGCAGC
TGCGCCAGATCTTCCTCGAATACGAGAATCTGTCGGGCAACGACATCGAG
AAGGCCATCAAGCGGGAGTTTAGCGGCTCCGTGGAGAAGGGTTTCCTGGC
CATCGTCAAGTGCTGCAAGTCCAAGATCGACTACTTTTCGGAGCGCCTGC
ACGACTCAATGGCCGGCATGGGCACCAAGGACAAGACGCTGATCCGCATC
ATTGTCAGCCGGTCGGAGATCGATCTGGGTGACATCAAGGAGGCATTCCA
GAACAAGTACGGCAAGAGCTTGGAGTCCTGGATCAAGGACGACCTCTCCG
GAGACTACAGCTACGTCTTGCAGTGCCTGGCCTCCTACGCAAGCTTTCTA
GACCAT
BO04448.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:32:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
AnxB9-RB | 975 | CG5730-PB | 1..972 | 17..988 | 4860 | 100 | Plus |
AnxB9-RD | 975 | CG5730-PD | 1..972 | 17..988 | 4860 | 100 | Plus |
AnxB9-RF | 975 | CG5730-PF | 1..926 | 17..942 | 4615 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:32:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
AnxB9-RB | 1184 | CG5730-RB | 70..1041 | 17..988 | 4860 | 100 | Plus |
AnxB9-RD | 1300 | CG5730-RD | 186..1157 | 17..988 | 4860 | 100 | Plus |
AnxB9-RF | 1457 | CG5730-RF | 95..1020 | 17..942 | 4615 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:32:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 21068067..21068777 | 45..755 | 3555 | 100 | Plus |
3R | 32079331 | 3R | 21068837..21069020 | 755..938 | 920 | 100 | Plus |
3R | 32079331 | 3R | 21070722..21070774 | 936..988 | 265 | 100 | Plus |
X | 23542271 | X | 16418705..16418779 | 391..317 | 225 | 86.7 | Minus |
Blast to na_te.dros performed on 2014-11-27 01:32:48 has no hits.
BO04448.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:40:56 Download gff for
BO04448.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
AnnIX-RB | 1..975 | 17..992 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:10:30 Download gff for
BO04448.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
AnnIX-RB | 74..1063 | 9..998 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:56:30 Download gff for
BO04448.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
AnxB9-RD | 186..1157 | 17..990 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:40:57 Download gff for
BO04448.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
AnnIX-RB | 74..1063 | 9..998 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:27:33 Download gff for
BO04448.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
AnxB9-RD | 186..1157 | 17..990 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:27:33 Download gff for
BO04448.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 21067470..21067499 | 17..46 | 100 | -> | Plus |
3R | 21068069..21068777 | 47..755 | 100 | -> | Plus |
3R | 21068838..21069019 | 756..937 | 100 | -> | Plus |
3R | 21070724..21070774 | 938..990 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:56:30 Download gff for
BO04448.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 16893192..16893221 | 17..46 | 100 | -> | Plus |
arm_3R | 16893791..16894499 | 47..755 | 100 | -> | Plus |
arm_3R | 16894560..16894741 | 756..937 | 100 | -> | Plus |
arm_3R | 16896446..16896496 | 938..990 | 96 | | Plus |
BO04448.pep Sequence
Translation from 16 to 1006
> BO04448.pep
MSSAEYYPFKCTPTVYPADPFDPVEDAAILRKAMKGFGTDEKAIIEILAR
RGIVQRLEIAEAFKTSYGKDLISDLKSELGGKFEDVILALMTPLPQFYAQ
ELHDAISGLGTDEEAIIEILCTLSNYGIKTIAQFYEQSFGKSLESDLKGD
TSGHFKRLCVSLVQGNRDENQGVDEAAAIADAQALHDAGEGQWGTDESTF
NSILITRSYQQLRQIFLEYENLSGNDIEKAIKREFSGSVEKGFLAIVKCC
KSKIDYFSERLHDSMAGMGTKDKTLIRIIVSRSEIDLGDIKEAFQNKYGK
SLESWIKDDLSGDYSYVLQCLASYASFLDH
BO04448.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:31:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
AnxB9-PB | 324 | CG5730-PB | 1..324 | 1..324 | 1659 | 100 | Plus |
AnxB9-PD | 324 | CG5730-PD | 1..324 | 1..324 | 1659 | 100 | Plus |
AnxB9-PF | 324 | CG5730-PF | 1..324 | 1..324 | 1600 | 96.6 | Plus |
AnxB9-PE | 324 | CG5730-PE | 1..324 | 1..324 | 1600 | 96.6 | Plus |
AnxB9-PC | 324 | CG5730-PC | 1..324 | 1..324 | 1600 | 96.6 | Plus |