Clone Sequence Records
BO04449.3prime Sequence
875 bp (768 high quality bases) assembled on 2005-12-01
> BO04449.3prime
ATGGTCTAGAAAGCTTGCAGCCTCGGGCAGCGGCTTCAGCTCCTTTATCT
GCTTGATCAGATAGGCCTTCTCGTCGTTGAACTGCTCGTCCTCGGAGCGA
TCCGTATGGAAGTTGGTCAGAAAGTCGACCAGCTTCGTCTGGTTGCGCAG
CAGGATGTCCAGAATGGGCTTCGGCTTGTTGGGATTGGCCACGAACACCT
TGAAGACGTGAAACGCCTCGAACTGAATGTTGCGCGACTTTTCCTTGAGC
ATGTTCATCATTAGCTTGAGGTTCTCCGGCTCGGATATGTAGCGCGTCAT
CACGGTGAAATTGTGCCGGTCCAGCAGCAGTTCCCCAAGCAGCTTCAAGC
TCTGACGCCGCGTCACATAGTTCTCCGAGTTGAGCAGGCGCTGGTAGTGC
TGCGAGAAGAACTTGTCGTAGTTGGCGTCCAGAAACTCCGCGCACAGCAG
CTTATGGCGCGTGAGCAGCTCCTTGAACGTAGAAAAGGCATCGCTGGCAA
TGTCAAAGGTGGAAACCTCCACGTAGCGGAAGAACTTGAAGAACTCATCC
GAGTGCAGCATGATCTTGGCCAGCGCCTCGTACCGGGCGCACTCCCTCAG
CATGGTACCGGAGTTCAGTGCGATCTCCGGATGCGCATCTTCGTAGCCGG
CCATCAGGGTGAACAGGATCTCCGGCTTCGTGCATATATACTCGACGGTG
GGCGAACGGGTGCCAATCTGGCGGCGCAGCACATTATTGAAAATGAGCGC
CACATGCTTCTTGCCCTCGAAATCGATGCGGTGCAGGTTCTGGATGAGCA
GCAGCAGCAGGTTGCTGTTGTACAGCTCCTGGGACAGCTGGGCCACCACG
TAGTCCGCCGGCGGTTCGGCATCGC
BO04449.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:05:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4083-PA | 1020 | Mo25-RA | 161..1017 | 875..19 | 4260 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:41:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Mo25-RB | 1899 | CG4083-RB | 464..1320 | 875..19 | 4270 | 99.9 | Minus |
| Mo25-RA | 2255 | CG4083-RA | 464..1320 | 875..19 | 4270 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:41:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 16614153..16615009 | 19..875 | 4270 | 99.9 | Plus |
Blast to na_te.dros performed on 2015-02-11 23:41:52 has no hits.
BO04449.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:03:14 Download gff for
BO04449.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mo25-PA | 161..1020 | 18..875 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:16:28 Download gff for
BO04449.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4083-PA | 161..1020 | 18..875 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:36:23 Download gff for
BO04449.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mo25-RA | 464..1325 | 11..875 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:54:41 Download gff for
BO04449.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mo25-RA | 464..1325 | 11..875 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:54:41 Download gff for
BO04449.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 16614148..16615009 | 11..875 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:36:23 Download gff for
BO04449.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 16607248..16608109 | 11..875 | 99 | | Plus |
BO04449.5prime Sequence
812 bp (771 high quality bases) assembled on 2005-11-29
> BO04449.5prime
GAAGTTATCAGTCGACATGCCACTGTTCGGGAAGTCACAGAAGTCGCCAG
TGGAGCTGGTCAAGTCGCTGAAGGAGGCGATCAACGCCCTGGAGGCGGGC
GACCGCAAGGTGGAGAAGGCGCAGGAGGACGTCAGCAAGAACCTGGTCTC
GATCAAGAACATGCTGTACGGTAGCAGCGATGCCGAGCCGCCGGCGGACT
ACGTGGTGGCCCAGCTGTCCCAGGAGCTGTACAACAGCAACCTGCTGCTG
CTGCTCATCCAGAACCTGCACCGCATCGATTTCGAGGGCAAGAAGCATGT
GGCGCTCATTTTCAATAATGTGCTGCGCCGCCAGATTGGCACCCGTTCGC
CCACCGTCGAGTATATATGCACGAAGCCGGAGATCCTGTTCACCCTGATG
GCCGGCTACGAAGATGCGCATCCGGAGATCGCACTGAACTCCGGTACCAT
GCTGAGGGAGTGCGCCCGGTACGAGGCGCTGGCCAAGATCATGCTGCACT
CGGATGAGTTCTTCAAGTTCTTCCGCTACGTGGAGGTTTCCACCTTTGAC
ATTGCCAGCGATGCCTTTTCTACGTTCAAGGAGCTGCTCACGCGCCATAA
GCTGCTGTGCGCGGAGTTTCTGGACGCCAACTACGACAAGTTCTTCTCGC
AGCACTACCAGCGCCTGCTCAACTCGGAGAACTATGTGACGCGGCGTCAG
AGCTTGAAGCTGCTTGGGGAACTGCTGCTGGACCGGCACAATTTCACCGT
GATGACGCGCTACATATCCGAGCCGGAGAACCTCAAGCTAATGATGAACA
TGCTCAAGGAAA
BO04449.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:05:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4083-PA | 1020 | Mo25-RA | 1..796 | 17..812 | 3980 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:20:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Mo25-RB | 1899 | CG4083-RB | 300..1099 | 13..812 | 3985 | 99.9 | Plus |
| Mo25-RA | 2255 | CG4083-RA | 300..1099 | 13..812 | 3985 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:20:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 16614374..16615173 | 812..13 | 3985 | 99.9 | Minus |
Blast to na_te.dros performed on 2015-02-10 17:20:33 has no hits.
BO04449.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:03:14 Download gff for
BO04449.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mo25-PA | 1..793 | 17..809 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:16:30 Download gff for
BO04449.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4083-PA | 1..793 | 17..809 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 02:41:40 Download gff for
BO04449.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mo25-RA | 290..1096 | 3..809 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:43:03 Download gff for
BO04449.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mo25-RA | 290..1096 | 3..809 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:43:03 Download gff for
BO04449.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 16614377..16615179 | 3..809 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 02:41:40 Download gff for
BO04449.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 16607477..16608279 | 3..809 | 99 | | Minus |
BO04449.complete Sequence
1051 bp (1051 high quality bases) assembled on 2005-09-08
GenBank Submission: FJ629769
> BO04449.complete
GAAGTTATCAGTCGACATGCCACTGTTCGGGAAGTCACAGAAGTCGCCAG
TGGAGCTGGTCAAGTCGCTGAAGGAGGCGATCAACGCCCTGGAGGCGGGC
GACCGCAAGGTGGAGAAGGCGCAGGAGGACGTCAGCAAGAACCTGGTCTC
GATCAAGAACATGCTGTACGGTAGCAGCGATGCCGAGCCGCCGGCGGACT
ACGTGGTGGCCCAGCTGTCCCAGGAGCTGTACAACAGCAACCTGCTGCTG
CTGCTCATCCAGAACCTGCACCGCATCGATTTCGAGGGCAAGAAGCATGT
GGCGCTCATTTTCAATAATGTGCTGCGCCGCCAGATTGGCACCCGTTCGC
CCACCGTCGAGTATATATGCACGAAGCCGGAGATCCTGTTCACCCTGATG
GCCGGCTACGAAGATGCGCATCCGGAGATCGCACTGAACTCCGGTACCAT
GCTGAGGGAGTGCGCCCGGTACGAGGCGCTGGCCAAGATCATGCTGCACT
CGGATGAGTTCTTCAAGTTCTTCCGCTACGTGGAGGTTTCCACCTTTGAC
ATTGCCAGCGATGCCTTTTCTACGTTCAAGGAGCTGCTCACGCGCCATAA
GCTGCTGTGCGCGGAGTTTCTGGACGCCAACTACGACAAGTTCTTCTCGC
AGCACTACCAGCGCCTGCTCAACTCGGAGAACTATGTGACGCGGCGTCAG
AGCTTGAAGCTGCTTGGGGAACTGCTGCTGGACCGGCACAATTTCACCGT
GATGACGCGCTACATATCCGAGCCGGAGAACCTCAAGCTAATGATGAACA
TGCTCAAGGAAAAGTCGCGCAACATTCAGTTCGAGGCGTTTCACGTCTTC
AAGGTGTTCGTGGCCAATCCCAACAAGCCGAAGCCCATTCTGGACATCCT
GCTGCGCAACCAGACGAAGCTGGTCGACTTTCTGACCAACTTCCATACGG
ATCGCTCCGAGGACGAGCAGTTCAACGACGAGAAGGCCTATCTGATCAAG
CAGATAAAGGAGCTGAAGCCGCTGCCCGAGGCTGCAAGCTTTCTAGACCA
T
BO04449.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:31:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Mo25-RB | 1020 | CG4083-PB | 1..1017 | 17..1033 | 5085 | 100 | Plus |
| Mo25-RA | 1020 | CG4083-PA | 1..1017 | 17..1033 | 5085 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:31:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Mo25-RB | 1899 | CG4083-RB | 300..1320 | 13..1033 | 5090 | 99.9 | Plus |
| Mo25-RA | 2255 | CG4083-RA | 300..1320 | 13..1033 | 5090 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:31:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 16614153..16615173 | 1033..13 | 5090 | 99.9 | Minus |
Blast to na_te.dros performed on 2014-11-27 16:31:49 has no hits.
BO04449.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:40:34 Download gff for
BO04449.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mo25-RA | 1..1020 | 17..1034 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:10:00 Download gff for
BO04449.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mo25-RA | 290..1325 | 3..1041 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:55:18 Download gff for
BO04449.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mo25-RA | 304..1320 | 17..1035 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:40:34 Download gff for
BO04449.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mo25-RA | 290..1325 | 3..1041 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:20:34 Download gff for
BO04449.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mo25-RA | 304..1320 | 17..1035 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:20:34 Download gff for
BO04449.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 16614151..16615169 | 17..1035 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:55:18 Download gff for
BO04449.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 16607251..16608269 | 17..1035 | 99 | | Minus |
BO04449.pep Sequence
Translation from 16 to 1051
> BO04449.pep
MPLFGKSQKSPVELVKSLKEAINALEAGDRKVEKAQEDVSKNLVSIKNML
YGSSDAEPPADYVVAQLSQELYNSNLLLLLIQNLHRIDFEGKKHVALIFN
NVLRRQIGTRSPTVEYICTKPEILFTLMAGYEDAHPEIALNSGTMLRECA
RYEALAKIMLHSDEFFKFFRYVEVSTFDIASDAFSTFKELLTRHKLLCAE
FLDANYDKFFSQHYQRLLNSENYVTRRQSLKLLGELLLDRHNFTVMTRYI
SEPENLKLMMNMLKEKSRNIQFEAFHVFKVFVANPNKPKPILDILLRNQT
KLVDFLTNFHTDRSEDEQFNDEKAYLIKQIKELKPLPEAASFLDH
BO04449.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:34:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Mo25-PB | 339 | CG4083-PB | 1..339 | 1..339 | 1728 | 100 | Plus |
| Mo25-PA | 339 | CG4083-PA | 1..339 | 1..339 | 1728 | 100 | Plus |
