Clone BO04450 Report

Search the DGRC for BO04450

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:44
Well:50
Vector:pDNR-Dual
Associated Gene/TranscriptCG31457-RB
Protein status:BO04450.pep: validated full length
Sequenced Size:1045

Clone Sequence Records

BO04450.3prime Sequence

930 bp (807 high quality bases) assembled on 2005-12-01

> BO04450.3prime
ATGGTCTAGAAAGCTTGCCGTCACGGTGTTATTTAGCTTATCCGCTCCTC
TTAGACGACAGCGCACACAACTTTTGAAATCGGCGTACGAACTGCTGCAT
TTTGTCTTGAAGGAACTGTGCTTTCGGCACAGGTTATCGGTCGTCTGCTT
GGGGCTCATAAAGCGCACTTTCTTTCGACACGGCGATGGGGTTTTTACAT
CCTCTAAGGCAGTTGTGTTGGCACCCAGAAAGGTGTCCTTGCTATAGTCG
TTGCGCAGATGACTCAGCTGCGGGTCGTTCATGTTGATCTCAACCATGGG
CACAGCAACTAGTGGCGTTGCAGCTGGCTGTCTGCTGGCTTCTGGTTCAT
CGTCCAGTAACTCCACCACGCTGTTATCGCTCTGCTCCCTTAGCTCCTGG
CCCATGTCTGTTTCGTAGAAGCCAGCGGTCTGTTCGTCAGGCAGCGGACT
GCTTAAGTTCATCTTCATCTCATAGGTCGCCTCATTGCGCTTGCGCACAA
AGTACCGTTCCAGTTCGACAAACACGTCGTCAAGAACGCTCAGTCGCAAC
TGCTGCTTGGCTTCGGGTATGATGACCTCTTCGAGTTCCGCCCGCAGCTC
CAGCTCGATTTCCGCCCGCACAGCTTGCTTGCAAGTGCTGAGCAGCTCCT
TTTTATACGCGTCGATCTCGCTGCTAATGAGCTGGGCGGCCTGCTGGCGC
CACTGGGCATTGTTCTCGGCGCAGCCAGTTTGCGTGCATCCTTCCCCGGA
GCCCCGCTCCTCCTCCACTTCACTCAGCTGCGACTTGACACCCTGCCGCT
GCAACGCCTTGTGGCGCCTCAATTTGCGATCGGCTGCGAGGCAGCGTCGT
CGGAAGCAGTGCATCTCCTCCCGTTGCAGCCGACACATGGTGCATATGTG
CTGTGGCAGACCGTCGCCGGGGCTCGATCT

BO04450.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:05:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG31457-PB 1014 CG31457-RB 109..1011 921..19 4465 99.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:16:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG31457-RB 1342 CG31457-RB 302..1212 930..19 4505 99.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 15:16:06
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 23127105..23127672 354..921 2810 99.6 Plus
3R 32079331 3R 23126711..23127046 19..354 1680 100 Plus
Blast to na_te.dros performed on 2015-02-13 15:16:08 has no hits.

BO04450.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:03:16 Download gff for BO04450.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31457-PB 101..1014 18..930 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:16:31 Download gff for BO04450.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31457-PB 101..1014 18..930 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:01:46 Download gff for BO04450.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31457-RB 302..1216 13..930 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:47:48 Download gff for BO04450.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31457-RB 302..1216 13..930 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 16:47:48 Download gff for BO04450.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 23126707..23127045 13..353 99 <- Plus
3R 23127105..23127680 354..930 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:01:46 Download gff for BO04450.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 18952429..18952767 13..353 99 <- Plus
arm_3R 18952827..18953402 354..930 99   Plus

BO04450.5prime Sequence

843 bp (661 high quality bases) assembled on 2005-12-01

> BO04450.5prime
GAAGTTATCAGTCGACATGAATGTTTGTCGCCTGTGCTTGTCGAAGGAAC
CCAATTTCCCCGTTTTCGGTGCAAATGGATCGACTGCTCTGCAGATAATG
GTCTGCACATCGCTGGAGATCGAGCCCGGCGACGGTCTGCCACAGCACAT
ATGCACCATGTGTCGGCTGCAACTGGAGGAGATGCACTGCTTCCGACGAC
GCTGCCTCGCAGCCGATCGCAAATTGAGGCGCCACAAGGCGTTGCAGCGG
CAGGGTGTCAAGTCGCAGCTGAGTGAAGTGGAGGAGGAGCGGGGCTCCGG
GGAAGGATGCACGCAAACTGGCTGCGCCGAGAACAATGCCCAGTGGCGCC
AGCAGGCCGCCCAGCTCATTAGCAGCGAGATCGACGCGTATAAAAAGGAG
CTGCTCAGCACTTGCAAGCAAGCTGTGCGGGCGGAAATCGAGCTGGAGCT
GCGGGCGGAACTCGAAGAGGTCATCATACCCGAAGCCAAGCAGCAGTTGC
GACTGAGCGTTCTTGACGACGTGTTTGTCGAACTGGAACGGTACTTTGTG
CGCAAGCGCAATGAGGCGACCTATGAGATGAAGATGAACTTAAGCAGTCC
GCTGCCTGACGAACAGACCGCTGGCTTCTACGAAACAGACATGGGCCAGG
AGCTAAGGGAGCAGAGCGATAACAGCGTGGTGGAGTTACTGGACGATGAA
CCAGAAGCCAGCAGACAGCCAGCTGCAACGCCACTAGTTGCTGTGCCCAT
GGTTGAGATCAACATGAACGACCCGCAGCTGAATCATCTGCGCAACGACT
ATAGCAAGGACACCTTTCTGGGTGCCAACACAACTGCCTTAAA

BO04450.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:05:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG31457-PB 1014 CG31457-RB 1..825 17..841 4075 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:21:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG31457-RB 1342 CG31457-RB 200..1026 15..841 4105 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:21:28
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 23127105..23127782 692..15 3375 99.9 Minus
3R 32079331 3R 23126897..23127046 841..692 735 99.3 Minus
Blast to na_te.dros performed on 2015-02-12 06:21:32 has no hits.

BO04450.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:03:17 Download gff for BO04450.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31457-PB 1..824 17..840 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:16:32 Download gff for BO04450.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31457-PB 1..824 17..840 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:26:22 Download gff for BO04450.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31457-RB 197..1025 12..840 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:06:37 Download gff for BO04450.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31457-RB 197..1025 12..840 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:06:37 Download gff for BO04450.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 23126898..23127045 693..840 99 <- Minus
3R 23127105..23127785 12..692 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:26:22 Download gff for BO04450.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 18952620..18952767 693..840 99 <- Minus
arm_3R 18952827..18953507 12..692 99   Minus

BO04450.complete Sequence

1045 bp (1045 high quality bases) assembled on 2005-09-08

GenBank Submission: FJ629770

> BO04450.complete
GAAGTTATCAGTCGACATGAATGTTTGTCGCCTGTGCTTGTCGAAGGAAC
CCAATTTCCCCGTTTTCGGTGCAAATGGATCGACTGCTCTGCAGATAATG
GTCTGCACATCGCTGGAGATCGAGCCCGGCGACGGTCTGCCACAGCACAT
ATGCACCATGTGTCGGCTGCAACTGGAGGAGATGCACTGCTTCCGACGAC
GCTGCCTCGCAGCCGATCGCAAATTGAGGCGCCACAAGGCGTTGCAGCGG
CAGGGTGTCAAGTCGCAGCTGAGTGAAGTGGAGGAGGAGCGGGGCTCCGG
GGAAGGATGCACGCAAACTGGCTGCGCCGAGAACAATGCCCAGTGGCGCC
AGCAGGCCGCCCAGCTCATTAGCAGCGAGATCGACGCGTATAAAAAGGAG
CTGCTCAGCACTTGCAAGCAAGCTGTGCGGGCGGAAATCGAGCTGGAGCT
GCGGGCGGAACTCGAAGAGGTCATCATACCCGAAGCCAAGCAGCAGTTGC
GACTGAGCGTTCTTGACGACGTGTTTGTCGAACTGGAACGGTACTTTGTG
CGCAAGCGCAATGAGGCGACCTATGAGATGAAGATGAACTTAAGCAGTCC
GCTGCCTGACGAACAGACCGCTGGCTTCTACGAAACAGACATGGGCCAGG
AGCTAAGGGAGCAGAGCGATAACAGCGTGGTGGAGTTACTGGACGATGAA
CCAGAAGCCAGCAGACAGCCAGCTGCAACGCCACTAGTTGCTGTGCCCAT
GGTTGAGATCAACATGAACGACCCGCAGCTGAGTCATCTGCGCAACGACT
ATAGCAAGGACACCTTTCTGGGTGCCAACACAACTGCCTTAGAGGATGTA
AAAACCCCATCGCCGTGTCGAAAGAAAGTGCGCTTTATGAGCCCCAAGCA
GACGACCGATAACCTGTGCCGAAAGCACAGTTCCTTCAAGACAAAATGCA
GCAGTTCGTACGCCGATTTCAAAAGTTGTGTGCGCTGTCGTCTAAGAGGA
GCGGATAAGCTAAATAACACCGTGACGGCAAGCTTTCTAGACCAT

BO04450.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:40:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG31457-RB 1014 CG31457-PB 1..1011 17..1027 5040 99.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:40:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG31457-RB 1342 CG31457-RB 200..1212 15..1027 5050 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:40:21
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 23127105..23127782 692..15 3375 99.9 Minus
3R 32079331 3R 23126711..23127046 1027..692 1680 100 Minus
Blast to na_te.dros performed on 2014-11-27 14:40:23 has no hits.

BO04450.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:40:44 Download gff for BO04450.complete
Subject Subject Range Query Range Percent Splice Strand
CG31457-RB 1..1014 17..1028 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:10:14 Download gff for BO04450.complete
Subject Subject Range Query Range Percent Splice Strand
CG31457-RB 200..1219 12..1033 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:49:05 Download gff for BO04450.complete
Subject Subject Range Query Range Percent Splice Strand
CG31457-RB 202..1212 17..1029 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:40:44 Download gff for BO04450.complete
Subject Subject Range Query Range Percent Splice Strand
CG31457-RB 200..1219 12..1033 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:16:29 Download gff for BO04450.complete
Subject Subject Range Query Range Percent Splice Strand
CG31457-RB 202..1212 17..1029 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:16:29 Download gff for BO04450.complete
Subject Subject Range Query Range Percent Splice Strand
3R 23126707..23127045 693..1029 99 <- Minus
3R 23127105..23127780 17..692 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:49:05 Download gff for BO04450.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 18952429..18952767 693..1029 99 <- Minus
arm_3R 18952827..18953502 17..692 99   Minus

BO04450.pep Sequence

Translation from 16 to 1045

> BO04450.pep
MNVCRLCLSKEPNFPVFGANGSTALQIMVCTSLEIEPGDGLPQHICTMCR
LQLEEMHCFRRRCLAADRKLRRHKALQRQGVKSQLSEVEEERGSGEGCTQ
TGCAENNAQWRQQAAQLISSEIDAYKKELLSTCKQAVRAEIELELRAELE
EVIIPEAKQQLRLSVLDDVFVELERYFVRKRNEATYEMKMNLSSPLPDEQ
TAGFYETDMGQELREQSDNSVVELLDDEPEASRQPAATPLVAVPMVEINM
NDPQLSHLRNDYSKDTFLGANTTALEDVKTPSPCRKKVRFMSPKQTTDNL
CRKHSSFKTKCSSSYADFKSCVRCRLRGADKLNNTVTASFLDH

BO04450.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:34:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG31457-PB 337 CG31457-PB 1..337 1..337 1751 100 Plus
CG31365-PA 639 CG31365-PA 13..286 3..272 187 25.7 Plus