Clone Sequence Records
BO04450.3prime Sequence
930 bp (807 high quality bases) assembled on 2005-12-01
> BO04450.3prime
ATGGTCTAGAAAGCTTGCCGTCACGGTGTTATTTAGCTTATCCGCTCCTC
TTAGACGACAGCGCACACAACTTTTGAAATCGGCGTACGAACTGCTGCAT
TTTGTCTTGAAGGAACTGTGCTTTCGGCACAGGTTATCGGTCGTCTGCTT
GGGGCTCATAAAGCGCACTTTCTTTCGACACGGCGATGGGGTTTTTACAT
CCTCTAAGGCAGTTGTGTTGGCACCCAGAAAGGTGTCCTTGCTATAGTCG
TTGCGCAGATGACTCAGCTGCGGGTCGTTCATGTTGATCTCAACCATGGG
CACAGCAACTAGTGGCGTTGCAGCTGGCTGTCTGCTGGCTTCTGGTTCAT
CGTCCAGTAACTCCACCACGCTGTTATCGCTCTGCTCCCTTAGCTCCTGG
CCCATGTCTGTTTCGTAGAAGCCAGCGGTCTGTTCGTCAGGCAGCGGACT
GCTTAAGTTCATCTTCATCTCATAGGTCGCCTCATTGCGCTTGCGCACAA
AGTACCGTTCCAGTTCGACAAACACGTCGTCAAGAACGCTCAGTCGCAAC
TGCTGCTTGGCTTCGGGTATGATGACCTCTTCGAGTTCCGCCCGCAGCTC
CAGCTCGATTTCCGCCCGCACAGCTTGCTTGCAAGTGCTGAGCAGCTCCT
TTTTATACGCGTCGATCTCGCTGCTAATGAGCTGGGCGGCCTGCTGGCGC
CACTGGGCATTGTTCTCGGCGCAGCCAGTTTGCGTGCATCCTTCCCCGGA
GCCCCGCTCCTCCTCCACTTCACTCAGCTGCGACTTGACACCCTGCCGCT
GCAACGCCTTGTGGCGCCTCAATTTGCGATCGGCTGCGAGGCAGCGTCGT
CGGAAGCAGTGCATCTCCTCCCGTTGCAGCCGACACATGGTGCATATGTG
CTGTGGCAGACCGTCGCCGGGGCTCGATCT
BO04450.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:05:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31457-PB | 1014 | CG31457-RB | 109..1011 | 921..19 | 4465 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:16:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31457-RB | 1342 | CG31457-RB | 302..1212 | 930..19 | 4505 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 15:16:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 23127105..23127672 | 354..921 | 2810 | 99.6 | Plus |
3R | 32079331 | 3R | 23126711..23127046 | 19..354 | 1680 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 15:16:08 has no hits.
BO04450.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:03:16 Download gff for
BO04450.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31457-PB | 101..1014 | 18..930 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:16:31 Download gff for
BO04450.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31457-PB | 101..1014 | 18..930 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:01:46 Download gff for
BO04450.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31457-RB | 302..1216 | 13..930 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:47:48 Download gff for
BO04450.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31457-RB | 302..1216 | 13..930 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 16:47:48 Download gff for
BO04450.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 23126707..23127045 | 13..353 | 99 | <- | Plus |
3R | 23127105..23127680 | 354..930 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:01:46 Download gff for
BO04450.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 18952429..18952767 | 13..353 | 99 | <- | Plus |
arm_3R | 18952827..18953402 | 354..930 | 99 | | Plus |
BO04450.5prime Sequence
843 bp (661 high quality bases) assembled on 2005-12-01
> BO04450.5prime
GAAGTTATCAGTCGACATGAATGTTTGTCGCCTGTGCTTGTCGAAGGAAC
CCAATTTCCCCGTTTTCGGTGCAAATGGATCGACTGCTCTGCAGATAATG
GTCTGCACATCGCTGGAGATCGAGCCCGGCGACGGTCTGCCACAGCACAT
ATGCACCATGTGTCGGCTGCAACTGGAGGAGATGCACTGCTTCCGACGAC
GCTGCCTCGCAGCCGATCGCAAATTGAGGCGCCACAAGGCGTTGCAGCGG
CAGGGTGTCAAGTCGCAGCTGAGTGAAGTGGAGGAGGAGCGGGGCTCCGG
GGAAGGATGCACGCAAACTGGCTGCGCCGAGAACAATGCCCAGTGGCGCC
AGCAGGCCGCCCAGCTCATTAGCAGCGAGATCGACGCGTATAAAAAGGAG
CTGCTCAGCACTTGCAAGCAAGCTGTGCGGGCGGAAATCGAGCTGGAGCT
GCGGGCGGAACTCGAAGAGGTCATCATACCCGAAGCCAAGCAGCAGTTGC
GACTGAGCGTTCTTGACGACGTGTTTGTCGAACTGGAACGGTACTTTGTG
CGCAAGCGCAATGAGGCGACCTATGAGATGAAGATGAACTTAAGCAGTCC
GCTGCCTGACGAACAGACCGCTGGCTTCTACGAAACAGACATGGGCCAGG
AGCTAAGGGAGCAGAGCGATAACAGCGTGGTGGAGTTACTGGACGATGAA
CCAGAAGCCAGCAGACAGCCAGCTGCAACGCCACTAGTTGCTGTGCCCAT
GGTTGAGATCAACATGAACGACCCGCAGCTGAATCATCTGCGCAACGACT
ATAGCAAGGACACCTTTCTGGGTGCCAACACAACTGCCTTAAA
BO04450.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:05:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31457-PB | 1014 | CG31457-RB | 1..825 | 17..841 | 4075 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:21:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31457-RB | 1342 | CG31457-RB | 200..1026 | 15..841 | 4105 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:21:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 23127105..23127782 | 692..15 | 3375 | 99.9 | Minus |
3R | 32079331 | 3R | 23126897..23127046 | 841..692 | 735 | 99.3 | Minus |
Blast to na_te.dros performed on 2015-02-12 06:21:32 has no hits.
BO04450.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:03:17 Download gff for
BO04450.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31457-PB | 1..824 | 17..840 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:16:32 Download gff for
BO04450.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31457-PB | 1..824 | 17..840 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:26:22 Download gff for
BO04450.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31457-RB | 197..1025 | 12..840 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:06:37 Download gff for
BO04450.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31457-RB | 197..1025 | 12..840 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:06:37 Download gff for
BO04450.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 23126898..23127045 | 693..840 | 99 | <- | Minus |
3R | 23127105..23127785 | 12..692 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:26:22 Download gff for
BO04450.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 18952620..18952767 | 693..840 | 99 | <- | Minus |
arm_3R | 18952827..18953507 | 12..692 | 99 | | Minus |
BO04450.complete Sequence
1045 bp (1045 high quality bases) assembled on 2005-09-08
GenBank Submission: FJ629770
> BO04450.complete
GAAGTTATCAGTCGACATGAATGTTTGTCGCCTGTGCTTGTCGAAGGAAC
CCAATTTCCCCGTTTTCGGTGCAAATGGATCGACTGCTCTGCAGATAATG
GTCTGCACATCGCTGGAGATCGAGCCCGGCGACGGTCTGCCACAGCACAT
ATGCACCATGTGTCGGCTGCAACTGGAGGAGATGCACTGCTTCCGACGAC
GCTGCCTCGCAGCCGATCGCAAATTGAGGCGCCACAAGGCGTTGCAGCGG
CAGGGTGTCAAGTCGCAGCTGAGTGAAGTGGAGGAGGAGCGGGGCTCCGG
GGAAGGATGCACGCAAACTGGCTGCGCCGAGAACAATGCCCAGTGGCGCC
AGCAGGCCGCCCAGCTCATTAGCAGCGAGATCGACGCGTATAAAAAGGAG
CTGCTCAGCACTTGCAAGCAAGCTGTGCGGGCGGAAATCGAGCTGGAGCT
GCGGGCGGAACTCGAAGAGGTCATCATACCCGAAGCCAAGCAGCAGTTGC
GACTGAGCGTTCTTGACGACGTGTTTGTCGAACTGGAACGGTACTTTGTG
CGCAAGCGCAATGAGGCGACCTATGAGATGAAGATGAACTTAAGCAGTCC
GCTGCCTGACGAACAGACCGCTGGCTTCTACGAAACAGACATGGGCCAGG
AGCTAAGGGAGCAGAGCGATAACAGCGTGGTGGAGTTACTGGACGATGAA
CCAGAAGCCAGCAGACAGCCAGCTGCAACGCCACTAGTTGCTGTGCCCAT
GGTTGAGATCAACATGAACGACCCGCAGCTGAGTCATCTGCGCAACGACT
ATAGCAAGGACACCTTTCTGGGTGCCAACACAACTGCCTTAGAGGATGTA
AAAACCCCATCGCCGTGTCGAAAGAAAGTGCGCTTTATGAGCCCCAAGCA
GACGACCGATAACCTGTGCCGAAAGCACAGTTCCTTCAAGACAAAATGCA
GCAGTTCGTACGCCGATTTCAAAAGTTGTGTGCGCTGTCGTCTAAGAGGA
GCGGATAAGCTAAATAACACCGTGACGGCAAGCTTTCTAGACCAT
BO04450.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:40:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31457-RB | 1014 | CG31457-PB | 1..1011 | 17..1027 | 5040 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:40:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31457-RB | 1342 | CG31457-RB | 200..1212 | 15..1027 | 5050 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:40:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 23127105..23127782 | 692..15 | 3375 | 99.9 | Minus |
3R | 32079331 | 3R | 23126711..23127046 | 1027..692 | 1680 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:40:23 has no hits.
BO04450.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:40:44 Download gff for
BO04450.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31457-RB | 1..1014 | 17..1028 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:10:14 Download gff for
BO04450.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31457-RB | 200..1219 | 12..1033 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:49:05 Download gff for
BO04450.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31457-RB | 202..1212 | 17..1029 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:40:44 Download gff for
BO04450.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31457-RB | 200..1219 | 12..1033 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:16:29 Download gff for
BO04450.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31457-RB | 202..1212 | 17..1029 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:16:29 Download gff for
BO04450.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 23126707..23127045 | 693..1029 | 99 | <- | Minus |
3R | 23127105..23127780 | 17..692 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:49:05 Download gff for
BO04450.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 18952429..18952767 | 693..1029 | 99 | <- | Minus |
arm_3R | 18952827..18953502 | 17..692 | 99 | | Minus |
BO04450.pep Sequence
Translation from 16 to 1045
> BO04450.pep
MNVCRLCLSKEPNFPVFGANGSTALQIMVCTSLEIEPGDGLPQHICTMCR
LQLEEMHCFRRRCLAADRKLRRHKALQRQGVKSQLSEVEEERGSGEGCTQ
TGCAENNAQWRQQAAQLISSEIDAYKKELLSTCKQAVRAEIELELRAELE
EVIIPEAKQQLRLSVLDDVFVELERYFVRKRNEATYEMKMNLSSPLPDEQ
TAGFYETDMGQELREQSDNSVVELLDDEPEASRQPAATPLVAVPMVEINM
NDPQLSHLRNDYSKDTFLGANTTALEDVKTPSPCRKKVRFMSPKQTTDNL
CRKHSSFKTKCSSSYADFKSCVRCRLRGADKLNNTVTASFLDH
BO04450.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:34:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31457-PB | 337 | CG31457-PB | 1..337 | 1..337 | 1751 | 100 | Plus |
CG31365-PA | 639 | CG31365-PA | 13..286 | 3..272 | 187 | 25.7 | Plus |