Clone Sequence Records
BO04451.3prime Sequence
898 bp (762 high quality bases) assembled on 2005-12-01
> BO04451.3prime
ATGGTCTAGAAAGCTTGCTGGCGAAGATCCGAAATGAAATTGTTTGTCAA
ATTCCTGACTTTTAGACAGATCAAAATTCTTTGGACGTTTGTCGACAATT
AGGAATTCGTCTTCCTCTAGCATTTCAGAGTCACCACGTTTCCTAGAATG
CCCGTATTTGTTAGACCCATAGACATACTCATCCGTGTCATTGCTCTGGT
AAACCATATAATTAGTCTCAATATATTTTTTTGATAACTTAAGTACATAA
GGATCGAAGGGAAAAAACGATTCCAGCGTCTCATCGGGCATGCATTTTTC
ATGACCGTAAACTGTAGCCAGTTTACGGCGAGCGTTGCGCTCCAAAACAG
TATGACAATAGGCCAGCTGGTAAGTTCTTGTAACACCAGCAAATGCTGTG
GCCACTGGGGCTAAACAATACCGCAGGGGATTTAAATGACACATAGCAAG
GCGCGATAGTTGGAGGGATTGGAGGAAGAGCAAATCTTTTGAACTGGCCG
TCAAATCTTTTGCGCGAAATGCAATTAAATAAAACACAGCTTGGCAAACA
GAATAGAAAACCAAATTGGCTTTCAGAGAGCAGTTCTGCTTATATGCATC
GGAGTCATCTATGTATGTATGAGCCCACCTTGTCAACTCTTTTAGGTAGA
AAGTAACAGTGCTAAGCGGCAAAAATCGTGCGCGAGATAAAAAGCTAGCC
ATGTATCCCACCGCAGCATGTCGAATTACAGCGGATACATTCGGATTTTG
GACTTTCGTCCATAAGGAATCAAGAAAAGCTTCGGAATATACCGACCGCA
GACTAGTTGCATAAAATAGGATGAATTGCACATGATGCGTGTTGTGGCTG
GGGCATAACACCTCGTCGAACAAATAAAGTAACATCTTAAAACATCGG
BO04451.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:05:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3278-PA | 1836 | Tif-IA-RA | 961..1833 | 891..19 | 4315 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:07:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tif-IA-RA | 2140 | CG3278-RA | 1177..2056 | 898..19 | 4340 | 99.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:07:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 22257651..22257902 | 487..236 | 1260 | 100 | Minus |
2L | 23513712 | 2L | 22253449..22253685 | 898..662 | 1125 | 98.3 | Minus |
2L | 23513712 | 2L | 22257960..22258176 | 235..19 | 1085 | 100 | Minus |
2L | 23513712 | 2L | 22253742..22253921 | 665..486 | 900 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 00:07:50 has no hits.
BO04451.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:03:17 Download gff for
BO04451.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3278-PA | 954..1836 | 16..898 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:16:34 Download gff for
BO04451.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3278-PA | 954..1836 | 16..898 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 20:30:42 Download gff for
BO04451.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tif-IA-RA | 1177..2056 | 19..898 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:40:38 Download gff for
BO04451.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tif-IA-RA | 1177..2056 | 19..898 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:40:38 Download gff for
BO04451.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 22253449..22253685 | 662..898 | 98 | -> | Minus |
2L | 22253746..22253921 | 486..661 | 100 | -> | Minus |
2L | 22257653..22257902 | 236..485 | 100 | -> | Minus |
2L | 22257960..22258175 | 20..235 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 20:30:42 Download gff for
BO04451.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 22253449..22253685 | 662..898 | 98 | -> | Minus |
arm_2L | 22253746..22253921 | 486..661 | 100 | -> | Minus |
arm_2L | 22257653..22257902 | 236..485 | 100 | -> | Minus |
arm_2L | 22257960..22258175 | 20..235 | 100 | -> | Minus |
BO04451.5prime Sequence
780 bp (779 high quality bases) assembled on 2005-12-01
> BO04451.5prime
GAAGTTATCAGTCGACATGTCCTTCTACACGAGTAAGACGGATGTGACTT
CCATTTTAAAGACGTTTTCTGGCGTAAAACGAAATCAGGCAAATGCCGTG
GCCATCAACAAAGTTCGATTTTCCACACCCAAAGAGAAGGGGCTCGCAGA
ATCAGTGCGCGTTGCCCTAGAAGAACGAAATTTCCATCTGGTCAAGGAGT
TCACATACTTCCTCCGGGAAGCAGAACTCAGCGATGATGAGGTTGTAATA
ATCATAAAAGATGCTAAACGAATTGTTCATAATTTGACTCCAGAATTTGT
AACCGTTGTCGAGGCGTTACTGTCCCTTAACTGGAAGAAAAGAAGTTCAG
AGATAATCGAAGCTTATACTGAATTTTGTATCGAACTAATGGTGACCCAT
AATAGATATTTACCGATTGGAGTCTCTAAACTAATTGTCCACTGGATTCC
TGGAGATATGGATGAATCCGATTGGGTCCACGGATGCCCTTCGGAGCACG
TGCGAAATGAGTTGAAACCCATCCATAAAGTACTGGATCGCATCTTAACT
GCCGTGCCAATGGCTTTCGATATTATCATAGATGCCATATCCGCCAAATT
CCCCTATTTCAAAAAGCCGTACCATGTGACGGCAGGGTATCTGTATAACG
TGCTTTGGTTATTAGAATACAAGCCTATTTTCGAAGAACTTGTTTTTCAA
CTAGTTTTACAAAAGCTTTTATTATTAGATGTTAATGCTCCAAAAGATGA
AATTGAATTAGAAATGAATGATGAGGAGGA
BO04451.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:05:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3278-PA | 1836 | Tif-IA-RA | 1..764 | 17..780 | 3820 | 100 | Plus |
CG3278-PB | 357 | Tif-IA-RB | 1..328 | 17..344 | 1640 | 100 | Plus |
CG3278-PB | 357 | Tif-IA-RB | 329..357 | 406..434 | 145 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:34:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tif-IA-RA | 2140 | CG3278-RA | 224..987 | 17..780 | 3820 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:34:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 22250372..22250854 | 233..715 | 2415 | 100 | Plus |
2L | 23513712 | 2L | 22250099..22250315 | 17..233 | 1085 | 100 | Plus |
2L | 23513712 | 2L | 22253194..22253259 | 715..780 | 330 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 15:34:10 has no hits.
BO04451.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:03:18 Download gff for
BO04451.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3278-PA | 1..763 | 17..779 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:16:35 Download gff for
BO04451.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3278-PA | 1..763 | 17..779 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:33:27 Download gff for
BO04451.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tif-IA-RA | 224..986 | 17..779 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:29:05 Download gff for
BO04451.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tif-IA-RA | 224..986 | 17..779 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:29:05 Download gff for
BO04451.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 22250099..22250314 | 17..232 | 100 | -> | Plus |
2L | 22250372..22250853 | 233..714 | 100 | -> | Plus |
2L | 22253194..22253258 | 715..779 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:33:27 Download gff for
BO04451.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 22250099..22250314 | 17..232 | 100 | -> | Plus |
arm_2L | 22250372..22250853 | 233..714 | 100 | -> | Plus |
arm_2L | 22253194..22253258 | 715..779 | 100 | | Plus |
BO04451.complete Sequence
1867 bp (1867 high quality bases) assembled on 2006-08-17
GenBank Submission: FJ638624
> BO04451.complete
GAAGTTATCAGTCGACATGTCCTTCTACACGAGTAAGACGGATGTGACTT
CCATTTTAAAGACGTTTTCTGGCGTAAAACGAAATCAGGCAAATGCCGTG
GCCATCAACAAAGTTCGATTTTCCACACCCAAAGAGAAGGGGCTCGCAGA
ATCAGTGCGCGTTGCCCTAGAAGAACGAAATTTCCATCTGGTCAAGGAGT
TCACATACTTCCTCCGGGAAGCAGAACTCAGCGATGATGAGGTTGTAATA
ATCATAAAAGATGCTAAACGAATTGTTCATAATTTGACTCCAGAATTTGT
AACCGTTGTCGAGGCGTTACTGTCCCTTAACTGGAAGAAAAGAAGTTCAG
AGATAATCGAAGCTTATACTGAATTTTGTATCGAACTAATGGTGACCCAT
AATAGATATTTACCGATTGGAGTCTCTAAACTAATTGTCCACTGGATTCC
TGGAGATATGGATGAATCCGATTGGGTCCACGGATGCCCTTCGGAGCACG
TGCGAAATGAGTTGAAACCCATCCATAAAGTACTGGATCGCATCTTAACT
GCCGTGCCAATGGCTTTCGATATTATCATAGATGCCATATCCGCCAAATT
CCCCTATTTCAAAAAGCCGTACCATGTGACGGCAGGGTATCTGTATAACG
TGCTTTGGTTATTAGAATACAAGCCTATTTTCGAAGAACTTGTTTTTCAA
CTAGTTTTACAAAAGCTTTTATTATTAGATGTTAATGCTCCAAAAGATGA
AATTGAATTAGAAATGAATGATGAGGAGGAAAAGGTGGAAGCGGACACCT
TGTTTGAAATCGACGATGTATGCGCCGAAAATGTACCCAAATCTGAAAAA
TCTGTGAGTCATCCTGTTGGCAAAACCTTGGATGTATGCCTATTCTTGCT
TTATAAGTTTTTTGATGGCAAATGTCGCCTTAATGAAAATAGTAGCGAAG
AACAGCGAAGGACTGCCAACCGATTGTTTAAGATGTTACTTTATTTGTTC
GACGAGGTGTTATTGCCCAGCCACAACACGCATCATGTGCAATTCATCCT
ATTTTATGCAACTAGTCTGCGGTCGGTATATTCCGAAGCTTTTCTTGATT
CCTTATGGACGAAAGTCCAAAATCCGAATGTATCCGCTGTAATTCGACAT
GCTGCGGTGGGATACATGGCTAGCTTTTTATCTCGCGCACGATTTTTGCC
GCTTAGCACTGTTACTTTCTACCTAAAAGAGTTGACAAGGTGGGCTCATA
CATACATAGATGACTCCGATGCATATAAGCAGAACTGCTCTCTGAAAGCC
AATTTGGTTTTCTATTCTGTTTGCCAAGCTGTGTTTTATTTAATTGCATT
TCGCGCAAAAGATTTGACGGCCAGTTCAAAAGATTTGCTCTTCCTCCAAT
CCCTCCAACTATCGCGCCTTGCTATGTGTCATTTAAATCCCCTGCGGTAT
TGTTTAGCCCCAGTGGCCACAGCATTTGCTGGTGTTACAAGAACTTACCA
GCTGGCCTATTGTCATACTGTTTTGGAGCGCAACGCTCGCCGTAAACTGG
CTACAGTTTACGGTCATGAAAAATGCATGCCCGATGAGACGCTGGAATCG
TTTTTTCCCTTCGATCCTTATGTACTTAAGTTATCAAAAAAATATATTGA
GACTAATTATATGGTTTACCAGAGCAATGACACGGATGAGTATGTCTATG
GGTCTAACAAATACGGGCATTCTAGGAAACGTGGTGACTCTGAAATGCTA
GAGGAAGACGAATTCCTAATTGTCGACAAACGTCCAAAGAATTTTGATCT
GTCTAAAAGTCAGGAATTTGACAAACAATTTCATTTCGGATCTTCGCCAG
CAAGCTTTCTAGACCAT
BO04451.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:57:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tif-IA-RA | 1836 | CG3278-PA | 1..1833 | 17..1849 | 9165 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:57:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tif-IA-RA | 2140 | CG3278-RA | 224..2056 | 17..1849 | 9165 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:57:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 22253194..22253685 | 715..1206 | 2460 | 100 | Plus |
2L | 23513712 | 2L | 22250372..22250854 | 233..715 | 2415 | 100 | Plus |
2L | 23513712 | 2L | 22257651..22257902 | 1381..1632 | 1260 | 100 | Plus |
2L | 23513712 | 2L | 22250099..22250315 | 17..233 | 1085 | 100 | Plus |
2L | 23513712 | 2L | 22257960..22258176 | 1633..1849 | 1085 | 100 | Plus |
2L | 23513712 | 2L | 22253742..22253921 | 1203..1382 | 900 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 06:57:13 has no hits.
BO04451.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:04:22 Download gff for
BO04451.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tif-IA-RA | 1..1836 | 17..1852 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:23:31 Download gff for
BO04451.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tif-IA-RA | 222..2054 | 17..1849 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:00:06 Download gff for
BO04451.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tif-IA-RA | 224..2056 | 17..1851 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:04:22 Download gff for
BO04451.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tif-IA-RA | 222..2054 | 17..1849 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:58:58 Download gff for
BO04451.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tif-IA-RA | 224..2056 | 17..1851 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:58:58 Download gff for
BO04451.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 22257653..22257902 | 1383..1632 | 100 | -> | Plus |
2L | 22250099..22250314 | 17..232 | 100 | -> | Plus |
2L | 22250372..22250853 | 233..714 | 100 | -> | Plus |
2L | 22253194..22253685 | 715..1206 | 100 | -> | Plus |
2L | 22253746..22253921 | 1207..1382 | 100 | -> | Plus |
2L | 22257960..22258176 | 1633..1851 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:00:06 Download gff for
BO04451.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 22250099..22250314 | 17..232 | 100 | -> | Plus |
arm_2L | 22250372..22250853 | 233..714 | 100 | -> | Plus |
arm_2L | 22253194..22253685 | 715..1206 | 100 | -> | Plus |
arm_2L | 22253746..22253921 | 1207..1382 | 100 | -> | Plus |
arm_2L | 22257653..22257902 | 1383..1632 | 100 | -> | Plus |
arm_2L | 22257960..22258176 | 1633..1851 | 99 | | Plus |
BO04451.pep Sequence
Translation from 16 to 1867
> BO04451.pep
MSFYTSKTDVTSILKTFSGVKRNQANAVAINKVRFSTPKEKGLAESVRVA
LEERNFHLVKEFTYFLREAELSDDEVVIIIKDAKRIVHNLTPEFVTVVEA
LLSLNWKKRSSEIIEAYTEFCIELMVTHNRYLPIGVSKLIVHWIPGDMDE
SDWVHGCPSEHVRNELKPIHKVLDRILTAVPMAFDIIIDAISAKFPYFKK
PYHVTAGYLYNVLWLLEYKPIFEELVFQLVLQKLLLLDVNAPKDEIELEM
NDEEEKVEADTLFEIDDVCAENVPKSEKSVSHPVGKTLDVCLFLLYKFFD
GKCRLNENSSEEQRRTANRLFKMLLYLFDEVLLPSHNTHHVQFILFYATS
LRSVYSEAFLDSLWTKVQNPNVSAVIRHAAVGYMASFLSRARFLPLSTVT
FYLKELTRWAHTYIDDSDAYKQNCSLKANLVFYSVCQAVFYLIAFRAKDL
TASSKDLLFLQSLQLSRLAMCHLNPLRYCLAPVATAFAGVTRTYQLAYCH
TVLERNARRKLATVYGHEKCMPDETLESFFPFDPYVLKLSKKYIETNYMV
YQSNDTDEYVYGSNKYGHSRKRGDSEMLEEDEFLIVDKRPKNFDLSKSQE
FDKQFHFGSSPASFLDH
BO04451.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:04:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tif-IA-PA | 611 | CG3278-PA | 1..611 | 1..611 | 3178 | 100 | Plus |