Clone BO04451 Report

Search the DGRC for BO04451

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:44
Well:51
Vector:pDNR-Dual
Associated Gene/TranscriptTif-IA-RA
Protein status:BO04451.pep: validated full length
Sequenced Size:1867

Clone Sequence Records

BO04451.3prime Sequence

898 bp (762 high quality bases) assembled on 2005-12-01

> BO04451.3prime
ATGGTCTAGAAAGCTTGCTGGCGAAGATCCGAAATGAAATTGTTTGTCAA
ATTCCTGACTTTTAGACAGATCAAAATTCTTTGGACGTTTGTCGACAATT
AGGAATTCGTCTTCCTCTAGCATTTCAGAGTCACCACGTTTCCTAGAATG
CCCGTATTTGTTAGACCCATAGACATACTCATCCGTGTCATTGCTCTGGT
AAACCATATAATTAGTCTCAATATATTTTTTTGATAACTTAAGTACATAA
GGATCGAAGGGAAAAAACGATTCCAGCGTCTCATCGGGCATGCATTTTTC
ATGACCGTAAACTGTAGCCAGTTTACGGCGAGCGTTGCGCTCCAAAACAG
TATGACAATAGGCCAGCTGGTAAGTTCTTGTAACACCAGCAAATGCTGTG
GCCACTGGGGCTAAACAATACCGCAGGGGATTTAAATGACACATAGCAAG
GCGCGATAGTTGGAGGGATTGGAGGAAGAGCAAATCTTTTGAACTGGCCG
TCAAATCTTTTGCGCGAAATGCAATTAAATAAAACACAGCTTGGCAAACA
GAATAGAAAACCAAATTGGCTTTCAGAGAGCAGTTCTGCTTATATGCATC
GGAGTCATCTATGTATGTATGAGCCCACCTTGTCAACTCTTTTAGGTAGA
AAGTAACAGTGCTAAGCGGCAAAAATCGTGCGCGAGATAAAAAGCTAGCC
ATGTATCCCACCGCAGCATGTCGAATTACAGCGGATACATTCGGATTTTG
GACTTTCGTCCATAAGGAATCAAGAAAAGCTTCGGAATATACCGACCGCA
GACTAGTTGCATAAAATAGGATGAATTGCACATGATGCGTGTTGTGGCTG
GGGCATAACACCTCGTCGAACAAATAAAGTAACATCTTAAAACATCGG

BO04451.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:05:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG3278-PA 1836 Tif-IA-RA 961..1833 891..19 4315 99.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:07:52
Subject Length Description Subject Range Query Range Score Percent Strand
Tif-IA-RA 2140 CG3278-RA 1177..2056 898..19 4340 99.5 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:07:48
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 22257651..22257902 487..236 1260 100 Minus
2L 23513712 2L 22253449..22253685 898..662 1125 98.3 Minus
2L 23513712 2L 22257960..22258176 235..19 1085 100 Minus
2L 23513712 2L 22253742..22253921 665..486 900 100 Minus
Blast to na_te.dros performed on 2015-02-13 00:07:50 has no hits.

BO04451.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:03:17 Download gff for BO04451.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3278-PA 954..1836 16..898 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:16:34 Download gff for BO04451.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3278-PA 954..1836 16..898 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 20:30:42 Download gff for BO04451.3prime
Subject Subject Range Query Range Percent Splice Strand
Tif-IA-RA 1177..2056 19..898 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:40:38 Download gff for BO04451.3prime
Subject Subject Range Query Range Percent Splice Strand
Tif-IA-RA 1177..2056 19..898 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:40:38 Download gff for BO04451.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 22253449..22253685 662..898 98 -> Minus
2L 22253746..22253921 486..661 100 -> Minus
2L 22257653..22257902 236..485 100 -> Minus
2L 22257960..22258175 20..235 100 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 20:30:42 Download gff for BO04451.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 22253449..22253685 662..898 98 -> Minus
arm_2L 22253746..22253921 486..661 100 -> Minus
arm_2L 22257653..22257902 236..485 100 -> Minus
arm_2L 22257960..22258175 20..235 100 -> Minus

BO04451.5prime Sequence

780 bp (779 high quality bases) assembled on 2005-12-01

> BO04451.5prime
GAAGTTATCAGTCGACATGTCCTTCTACACGAGTAAGACGGATGTGACTT
CCATTTTAAAGACGTTTTCTGGCGTAAAACGAAATCAGGCAAATGCCGTG
GCCATCAACAAAGTTCGATTTTCCACACCCAAAGAGAAGGGGCTCGCAGA
ATCAGTGCGCGTTGCCCTAGAAGAACGAAATTTCCATCTGGTCAAGGAGT
TCACATACTTCCTCCGGGAAGCAGAACTCAGCGATGATGAGGTTGTAATA
ATCATAAAAGATGCTAAACGAATTGTTCATAATTTGACTCCAGAATTTGT
AACCGTTGTCGAGGCGTTACTGTCCCTTAACTGGAAGAAAAGAAGTTCAG
AGATAATCGAAGCTTATACTGAATTTTGTATCGAACTAATGGTGACCCAT
AATAGATATTTACCGATTGGAGTCTCTAAACTAATTGTCCACTGGATTCC
TGGAGATATGGATGAATCCGATTGGGTCCACGGATGCCCTTCGGAGCACG
TGCGAAATGAGTTGAAACCCATCCATAAAGTACTGGATCGCATCTTAACT
GCCGTGCCAATGGCTTTCGATATTATCATAGATGCCATATCCGCCAAATT
CCCCTATTTCAAAAAGCCGTACCATGTGACGGCAGGGTATCTGTATAACG
TGCTTTGGTTATTAGAATACAAGCCTATTTTCGAAGAACTTGTTTTTCAA
CTAGTTTTACAAAAGCTTTTATTATTAGATGTTAATGCTCCAAAAGATGA
AATTGAATTAGAAATGAATGATGAGGAGGA

BO04451.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:05:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG3278-PA 1836 Tif-IA-RA 1..764 17..780 3820 100 Plus
CG3278-PB 357 Tif-IA-RB 1..328 17..344 1640 100 Plus
CG3278-PB 357 Tif-IA-RB 329..357 406..434 145 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:34:11
Subject Length Description Subject Range Query Range Score Percent Strand
Tif-IA-RA 2140 CG3278-RA 224..987 17..780 3820 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:34:08
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 22250372..22250854 233..715 2415 100 Plus
2L 23513712 2L 22250099..22250315 17..233 1085 100 Plus
2L 23513712 2L 22253194..22253259 715..780 330 100 Plus
Blast to na_te.dros performed on 2015-02-11 15:34:10 has no hits.

BO04451.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:03:18 Download gff for BO04451.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3278-PA 1..763 17..779 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:16:35 Download gff for BO04451.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3278-PA 1..763 17..779 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:33:27 Download gff for BO04451.5prime
Subject Subject Range Query Range Percent Splice Strand
Tif-IA-RA 224..986 17..779 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:29:05 Download gff for BO04451.5prime
Subject Subject Range Query Range Percent Splice Strand
Tif-IA-RA 224..986 17..779 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:29:05 Download gff for BO04451.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 22250099..22250314 17..232 100 -> Plus
2L 22250372..22250853 233..714 100 -> Plus
2L 22253194..22253258 715..779 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:33:27 Download gff for BO04451.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 22250099..22250314 17..232 100 -> Plus
arm_2L 22250372..22250853 233..714 100 -> Plus
arm_2L 22253194..22253258 715..779 100   Plus

BO04451.complete Sequence

1867 bp (1867 high quality bases) assembled on 2006-08-17

GenBank Submission: FJ638624

> BO04451.complete
GAAGTTATCAGTCGACATGTCCTTCTACACGAGTAAGACGGATGTGACTT
CCATTTTAAAGACGTTTTCTGGCGTAAAACGAAATCAGGCAAATGCCGTG
GCCATCAACAAAGTTCGATTTTCCACACCCAAAGAGAAGGGGCTCGCAGA
ATCAGTGCGCGTTGCCCTAGAAGAACGAAATTTCCATCTGGTCAAGGAGT
TCACATACTTCCTCCGGGAAGCAGAACTCAGCGATGATGAGGTTGTAATA
ATCATAAAAGATGCTAAACGAATTGTTCATAATTTGACTCCAGAATTTGT
AACCGTTGTCGAGGCGTTACTGTCCCTTAACTGGAAGAAAAGAAGTTCAG
AGATAATCGAAGCTTATACTGAATTTTGTATCGAACTAATGGTGACCCAT
AATAGATATTTACCGATTGGAGTCTCTAAACTAATTGTCCACTGGATTCC
TGGAGATATGGATGAATCCGATTGGGTCCACGGATGCCCTTCGGAGCACG
TGCGAAATGAGTTGAAACCCATCCATAAAGTACTGGATCGCATCTTAACT
GCCGTGCCAATGGCTTTCGATATTATCATAGATGCCATATCCGCCAAATT
CCCCTATTTCAAAAAGCCGTACCATGTGACGGCAGGGTATCTGTATAACG
TGCTTTGGTTATTAGAATACAAGCCTATTTTCGAAGAACTTGTTTTTCAA
CTAGTTTTACAAAAGCTTTTATTATTAGATGTTAATGCTCCAAAAGATGA
AATTGAATTAGAAATGAATGATGAGGAGGAAAAGGTGGAAGCGGACACCT
TGTTTGAAATCGACGATGTATGCGCCGAAAATGTACCCAAATCTGAAAAA
TCTGTGAGTCATCCTGTTGGCAAAACCTTGGATGTATGCCTATTCTTGCT
TTATAAGTTTTTTGATGGCAAATGTCGCCTTAATGAAAATAGTAGCGAAG
AACAGCGAAGGACTGCCAACCGATTGTTTAAGATGTTACTTTATTTGTTC
GACGAGGTGTTATTGCCCAGCCACAACACGCATCATGTGCAATTCATCCT
ATTTTATGCAACTAGTCTGCGGTCGGTATATTCCGAAGCTTTTCTTGATT
CCTTATGGACGAAAGTCCAAAATCCGAATGTATCCGCTGTAATTCGACAT
GCTGCGGTGGGATACATGGCTAGCTTTTTATCTCGCGCACGATTTTTGCC
GCTTAGCACTGTTACTTTCTACCTAAAAGAGTTGACAAGGTGGGCTCATA
CATACATAGATGACTCCGATGCATATAAGCAGAACTGCTCTCTGAAAGCC
AATTTGGTTTTCTATTCTGTTTGCCAAGCTGTGTTTTATTTAATTGCATT
TCGCGCAAAAGATTTGACGGCCAGTTCAAAAGATTTGCTCTTCCTCCAAT
CCCTCCAACTATCGCGCCTTGCTATGTGTCATTTAAATCCCCTGCGGTAT
TGTTTAGCCCCAGTGGCCACAGCATTTGCTGGTGTTACAAGAACTTACCA
GCTGGCCTATTGTCATACTGTTTTGGAGCGCAACGCTCGCCGTAAACTGG
CTACAGTTTACGGTCATGAAAAATGCATGCCCGATGAGACGCTGGAATCG
TTTTTTCCCTTCGATCCTTATGTACTTAAGTTATCAAAAAAATATATTGA
GACTAATTATATGGTTTACCAGAGCAATGACACGGATGAGTATGTCTATG
GGTCTAACAAATACGGGCATTCTAGGAAACGTGGTGACTCTGAAATGCTA
GAGGAAGACGAATTCCTAATTGTCGACAAACGTCCAAAGAATTTTGATCT
GTCTAAAAGTCAGGAATTTGACAAACAATTTCATTTCGGATCTTCGCCAG
CAAGCTTTCTAGACCAT

BO04451.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:57:13
Subject Length Description Subject Range Query Range Score Percent Strand
Tif-IA-RA 1836 CG3278-PA 1..1833 17..1849 9165 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:57:14
Subject Length Description Subject Range Query Range Score Percent Strand
Tif-IA-RA 2140 CG3278-RA 224..2056 17..1849 9165 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:57:12
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 22253194..22253685 715..1206 2460 100 Plus
2L 23513712 2L 22250372..22250854 233..715 2415 100 Plus
2L 23513712 2L 22257651..22257902 1381..1632 1260 100 Plus
2L 23513712 2L 22250099..22250315 17..233 1085 100 Plus
2L 23513712 2L 22257960..22258176 1633..1849 1085 100 Plus
2L 23513712 2L 22253742..22253921 1203..1382 900 100 Plus
Blast to na_te.dros performed on 2014-11-27 06:57:13 has no hits.

BO04451.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:04:22 Download gff for BO04451.complete
Subject Subject Range Query Range Percent Splice Strand
Tif-IA-RA 1..1836 17..1852 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:23:31 Download gff for BO04451.complete
Subject Subject Range Query Range Percent Splice Strand
Tif-IA-RA 222..2054 17..1849 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:00:06 Download gff for BO04451.complete
Subject Subject Range Query Range Percent Splice Strand
Tif-IA-RA 224..2056 17..1851 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:04:22 Download gff for BO04451.complete
Subject Subject Range Query Range Percent Splice Strand
Tif-IA-RA 222..2054 17..1849 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:58:58 Download gff for BO04451.complete
Subject Subject Range Query Range Percent Splice Strand
Tif-IA-RA 224..2056 17..1851 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:58:58 Download gff for BO04451.complete
Subject Subject Range Query Range Percent Splice Strand
2L 22257653..22257902 1383..1632 100 -> Plus
2L 22250099..22250314 17..232 100 -> Plus
2L 22250372..22250853 233..714 100 -> Plus
2L 22253194..22253685 715..1206 100 -> Plus
2L 22253746..22253921 1207..1382 100 -> Plus
2L 22257960..22258176 1633..1851 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:00:06 Download gff for BO04451.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 22250099..22250314 17..232 100 -> Plus
arm_2L 22250372..22250853 233..714 100 -> Plus
arm_2L 22253194..22253685 715..1206 100 -> Plus
arm_2L 22253746..22253921 1207..1382 100 -> Plus
arm_2L 22257653..22257902 1383..1632 100 -> Plus
arm_2L 22257960..22258176 1633..1851 99   Plus

BO04451.pep Sequence

Translation from 16 to 1867

> BO04451.pep
MSFYTSKTDVTSILKTFSGVKRNQANAVAINKVRFSTPKEKGLAESVRVA
LEERNFHLVKEFTYFLREAELSDDEVVIIIKDAKRIVHNLTPEFVTVVEA
LLSLNWKKRSSEIIEAYTEFCIELMVTHNRYLPIGVSKLIVHWIPGDMDE
SDWVHGCPSEHVRNELKPIHKVLDRILTAVPMAFDIIIDAISAKFPYFKK
PYHVTAGYLYNVLWLLEYKPIFEELVFQLVLQKLLLLDVNAPKDEIELEM
NDEEEKVEADTLFEIDDVCAENVPKSEKSVSHPVGKTLDVCLFLLYKFFD
GKCRLNENSSEEQRRTANRLFKMLLYLFDEVLLPSHNTHHVQFILFYATS
LRSVYSEAFLDSLWTKVQNPNVSAVIRHAAVGYMASFLSRARFLPLSTVT
FYLKELTRWAHTYIDDSDAYKQNCSLKANLVFYSVCQAVFYLIAFRAKDL
TASSKDLLFLQSLQLSRLAMCHLNPLRYCLAPVATAFAGVTRTYQLAYCH
TVLERNARRKLATVYGHEKCMPDETLESFFPFDPYVLKLSKKYIETNYMV
YQSNDTDEYVYGSNKYGHSRKRGDSEMLEEDEFLIVDKRPKNFDLSKSQE
FDKQFHFGSSPASFLDH

BO04451.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:04:13
Subject Length Description Subject Range Query Range Score Percent Strand
Tif-IA-PA 611 CG3278-PA 1..611 1..611 3178 100 Plus