Clone Sequence Records
BO04453.3prime Sequence
431 bp (390 high quality bases) assembled on 2005-12-01
> BO04453.3prime
ATGGTCTAGAAAGCTTGCTTGAAGGGAGCCCATCACAGTCTTTGATTTCA
GAACATCATTTTCATATGAAAAGACAGTTTCCTTGCCGTTTTCGACGACC
CGTTTGGTCATCAGTTTCTTGCCATTCACAAACACCGTCGAAGTGGAGGT
GCGCTTGACACTGGCACCGGGTCCGCTGGAGATGTGGGTGACACCGCTGC
TGCCATTGCCGTGGGTCATCGACGAGAACGAGGTGAAGCCGCTGGTGGGC
ATAAAGAAGTCCATCATTGAGTAGTTAAGCATTGGAGCCCCGAACGGACT
GGCCACTTTGTGCTGGTGGTGATGATGATGGTGGCGAGATGATCCACTGC
TGCCGCCATTGCGTCGACTGCCACTCGAGCCGCTTGTGCTGCCATTCGAA
TGTCCATTGGCATCTCGGAATAAGTCGGCGA
BO04453.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:05:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8448-PD | 780 | mrj-RD | 365..777 | 431..19 | 2065 | 100 | Minus |
| CG8448-PB | 780 | mrj-RB | 365..777 | 431..19 | 2065 | 100 | Minus |
| CG8448-PC | 780 | mrj-RC | 365..777 | 431..19 | 2065 | 100 | Minus |
| CG8448-PA | 780 | mrj-RA | 365..777 | 431..19 | 2065 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:21:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mrj-RG | 2499 | CG8448-RG | 1116..1528 | 431..19 | 2065 | 100 | Minus |
| mrj-RF | 2112 | CG8448-RF | 729..1141 | 431..19 | 2065 | 100 | Minus |
| mrj-RH | 2274 | CG8448-RH | 891..1303 | 431..19 | 2065 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:21:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 16204441..16204756 | 100..415 | 1580 | 100 | Plus |
| 2R | 25286936 | 2R | 16204300..16204382 | 19..101 | 415 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 17:21:34 has no hits.
BO04453.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:03:21 Download gff for
BO04453.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mrj-PC | 366..780 | 18..430 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:16:39 Download gff for
BO04453.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8448-PA | 366..780 | 18..430 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 02:41:42 Download gff for
BO04453.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mrj-RH | 892..1308 | 12..430 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:43:15 Download gff for
BO04453.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mrj-RH | 892..1308 | 12..430 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:43:15 Download gff for
BO04453.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 16204295..16204381 | 12..100 | 96 | <- | Plus |
| 2R | 16204442..16204754 | 101..413 | 100 | <- | Plus |
| 2R | 16204825..16204841 | 414..430 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 02:41:42 Download gff for
BO04453.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 12091800..12091886 | 12..100 | 96 | <- | Plus |
| arm_2R | 12091947..12092259 | 101..413 | 100 | <- | Plus |
| arm_2R | 12092330..12092346 | 414..430 | 100 | | Plus |
BO04453.5prime Sequence
449 bp (412 high quality bases) assembled on 2005-12-01
> BO04453.5prime
GAAGTTATCAGTCGACATGGTTGACTACTATAAAATTTTGGATGTTTCGC
GATCCGCTACCGATAGTGAAGTGAAGAAGGCATATCGAAAACTGGCACTA
AAATGGCACCCAGACAAGAATCCCGACAACCTGGATGAGGCCAACAAACG
CTTCCGCGAGCTGTCCGAAGCCTACGAAGTTCTTTCCGATGAGAAAAAGC
GTCGCATATACGATGAGTATGGCAAAGATGGACTGGGCGATCGTGGCCAG
AGTCGCTCGCATGCCCGCCACCATTATAGCACACACGATTTCGATGACTT
CGATATTTTGGGCGGCTTTCAGTTTGCATTCCGCCCGCCCGAGGAAGTGT
TCCGTGAGTTCTTCGGCATCCACTCGCCCTTCGCCGACTTATTCCGAGAT
GCCAATGGACATTCGAATGGCAGCACAAGCGGCTCGAGTGGCAGTCGAC
BO04453.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:05:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8448-PD | 780 | mrj-RD | 1..433 | 17..449 | 2165 | 100 | Plus |
| CG8448-PB | 780 | mrj-RB | 1..433 | 17..449 | 2165 | 100 | Plus |
| CG8448-PC | 780 | mrj-RC | 1..433 | 17..449 | 2165 | 100 | Plus |
| CG8448-PA | 780 | mrj-RA | 1..433 | 17..449 | 2165 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 02:27:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mrj-RA | 1929 | CG8448-RA | 180..614 | 15..449 | 2175 | 100 | Plus |
| mrj-RC | 2143 | CG8448-RC | 394..828 | 15..449 | 2175 | 100 | Plus |
| mrj-RB | 2126 | CG8448-RB | 377..811 | 15..449 | 2175 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 02:27:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 16204825..16205032 | 398..191 | 1040 | 100 | Minus |
| 2R | 25286936 | 2R | 16205710..16205819 | 191..82 | 550 | 100 | Minus |
| 2R | 25286936 | 2R | 16205901..16205967 | 81..15 | 335 | 100 | Minus |
| 2R | 25286936 | 2R | 16204704..16204756 | 449..397 | 265 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 02:27:08 has no hits.
BO04453.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:03:22 Download gff for
BO04453.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mrj-PC | 1..433 | 17..449 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:16:40 Download gff for
BO04453.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8448-PA | 1..433 | 17..449 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 20:47:43 Download gff for
BO04453.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mrj-RB | 370..811 | 7..449 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:20:37 Download gff for
BO04453.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mrj-RB | 370..811 | 7..449 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:20:37 Download gff for
BO04453.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 16205901..16205974 | 7..81 | 96 | | Minus |
| 2R | 16205710..16205819 | 82..191 | 100 | <- | Minus |
| 2R | 16204704..16204754 | 399..449 | 100 | <- | Minus |
| 2R | 16204825..16205031 | 192..398 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 20:47:43 Download gff for
BO04453.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 12092209..12092259 | 399..449 | 100 | <- | Minus |
| arm_2R | 12092330..12092536 | 192..398 | 100 | <- | Minus |
| arm_2R | 12093215..12093324 | 82..191 | 100 | <- | Minus |
| arm_2R | 12093406..12093479 | 7..81 | 96 | | Minus |
BO04453.complete Sequence
811 bp (811 high quality bases) assembled on 2006-08-21
GenBank Submission: FJ629771
> BO04453.complete
GAAGTTATCAGTCGACATGGTTGACTACTATAAAATTTTGGATGTTTCGC
GATCCGCTACCGATAGTGAAGTGAAGAAGGCATATCGAAAACTGGCACTA
AAATGGCACCCAGACAAGAATCCCGACAACCTGGATGAGGCCAACAAACG
CTTCCGCGAGCTGTCCGAAGCCTACGAAGTTCTTTCCGATGAGAAAAAGC
GTCGCATATACGATGAGTATGGCAAAGATGGACTGGGCGATCGTGGCCAG
AGTCGCTCGCATGCCCGCCACCATTATAGCACACACGATTTCGATGACTT
CGATATTTTGGGCGGCTTTCAGTTTGCATTCCGCCCGCCCGAGGAAGTGT
TCCGTGAGTTCTTCGGCATCCACTCGCCCTTCGCCGACTTATTCCGAGAT
GCCAATGGACATTCGAATGGCAGCACAAGCGGCTCGAGTGGCAGTCGACG
CAATGGCGGCAGCAGTGGATCATCTCGCCACCATCATCATCACCACCAGC
ACAAAGTGGCCAGTCCGTTCGGGGCTCCAATGCTTAACTACTCAATGATG
GACTTCTTTATGCCCACCAGCGGCTTCACCTCGTTCTCGTCGATGACCCA
CGGCAATGGCAGCAGCGGTGTCACCCACATCTCCAGCGGACCCGGTGCCA
GTGTCAAGCGCACCTCCACTTCGACGGTGTTTGTGAATGGCAAGAAACTG
ATGACCAAACGGGTCGTCGAAAACGGCAAGGAAACTGTCTTTTCATATGA
AAATGATGTTCTGAAATCAAAGACTGTGATGGGCTCCCTTCAAGCAAGCT
TTCTAGACCAT
BO04453.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:32:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mrj-RA | 780 | CG8448-PA | 1..777 | 17..793 | 3885 | 100 | Plus |
| mrj-RC | 780 | CG8448-PC | 1..777 | 17..793 | 3885 | 100 | Plus |
| mrj-RB | 780 | CG8448-PB | 1..777 | 17..793 | 3885 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:32:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mrj-RA | 1929 | CG8448-RA | 180..958 | 15..793 | 3895 | 100 | Plus |
| mrj-RC | 2143 | CG8448-RC | 394..1172 | 15..793 | 3895 | 100 | Plus |
| mrj-RB | 2126 | CG8448-RB | 377..1155 | 15..793 | 3895 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:32:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 16204441..16204756 | 712..397 | 1580 | 100 | Minus |
| 2R | 25286936 | 2R | 16204825..16205032 | 398..191 | 1040 | 100 | Minus |
| 2R | 25286936 | 2R | 16205710..16205819 | 191..82 | 550 | 100 | Minus |
| 2R | 25286936 | 2R | 16204300..16204382 | 793..711 | 415 | 100 | Minus |
| 2R | 25286936 | 2R | 16205901..16205967 | 81..15 | 335 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:32:46 has no hits.
BO04453.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:54:21 Download gff for
BO04453.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mrj-RB | 1..780 | 17..794 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:10:44 Download gff for
BO04453.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mrj-RB | 316..1106 | 7..800 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:26:42 Download gff for
BO04453.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mrj-RB | 379..1155 | 17..795 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:54:21 Download gff for
BO04453.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mrj-RB | 316..1106 | 7..800 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:33:44 Download gff for
BO04453.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mrj-RB | 379..1155 | 17..795 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:33:44 Download gff for
BO04453.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 16204825..16205031 | 192..398 | 100 | <- | Minus |
| 2R | 16205710..16205819 | 82..191 | 100 | <- | Minus |
| 2R | 16205901..16205965 | 17..81 | 100 | | Minus |
| 2R | 16204296..16204381 | 712..795 | 97 | <- | Minus |
| 2R | 16204442..16204754 | 399..711 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:26:42 Download gff for
BO04453.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 12091801..12091886 | 712..795 | 97 | <- | Minus |
| arm_2R | 12091947..12092259 | 399..711 | 100 | <- | Minus |
| arm_2R | 12092330..12092536 | 192..398 | 100 | <- | Minus |
| arm_2R | 12093215..12093324 | 82..191 | 100 | <- | Minus |
| arm_2R | 12093406..12093470 | 17..81 | 100 | | Minus |
BO04453.pep Sequence
Translation from 16 to 811
> BO04453.pep
MVDYYKILDVSRSATDSEVKKAYRKLALKWHPDKNPDNLDEANKRFRELS
EAYEVLSDEKKRRIYDEYGKDGLGDRGQSRSHARHHYSTHDFDDFDILGG
FQFAFRPPEEVFREFFGIHSPFADLFRDANGHSNGSTSGSSGSRRNGGSS
GSSRHHHHHHQHKVASPFGAPMLNYSMMDFFMPTSGFTSFSSMTHGNGSS
GVTHISSGPGASVKRTSTSTVFVNGKKLMTKRVVENGKETVFSYENDVLK
SKTVMGSLQASFLDH
BO04453.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:57:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mrj-PA | 259 | CG8448-PA | 1..259 | 1..259 | 1376 | 100 | Plus |
| mrj-PC | 259 | CG8448-PC | 1..259 | 1..259 | 1376 | 100 | Plus |
| mrj-PB | 259 | CG8448-PB | 1..259 | 1..259 | 1376 | 100 | Plus |
| mrj-PD | 259 | CG8448-PD | 1..259 | 1..259 | 1376 | 100 | Plus |
| mrj-PF | 208 | CG8448-PF | 2..208 | 53..259 | 1076 | 97.6 | Plus |
