Clone Sequence Records
BO04454.3prime Sequence
362 bp (361 high quality bases) assembled on 2005-12-01
> BO04454.3prime
ATGGTCTAGAAAGCTTGCTCCCACGGCGCTGGTATAGCCGCGCACCATGA
GGTAGCCATTGACGATGTCCGAGGGCATGTGCTGCATGGACGCGTACTCG
TCGGCGCTGGCGAACCTTAGTTTCGTGTGCGGATCGGCATAAGGAGCGGG
CAGACCGCTGATATCCGAGTACTTCTTGGCCGGAACCAACGAGGGCGGTG
CATTGAGCGTGAAGTAGGTGGGTTGTTCGGCGGACAGCTTCTGGCTACGC
TCCATGTTGCTTATCTGACGTAGAGGGCGGTAAACACAGTTCTTTGGAAA
GGTAAACGGACGCTTAAAGGAGCGTTTAGGCTTCGCATTTTGTTCCATGT
CGACTGATAACT
BO04454.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:05:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12659-PB | 333 | CG12659-RB | 1..330 | 348..19 | 1650 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 16:04:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12659-RC | 896 | CG12659-RC | 36..365 | 348..19 | 1650 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 16:04:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 8591306..8591502 | 19..215 | 985 | 100 | Plus |
X | 23542271 | X | 8591562..8591694 | 216..348 | 665 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 16:04:57 has no hits.
BO04454.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:03:23 Download gff for
BO04454.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12659-PB | 1..333 | 18..348 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:16:42 Download gff for
BO04454.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12659-PB | 1..333 | 18..348 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:29:14 Download gff for
BO04454.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12659-RC | 36..371 | 10..348 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:40:33 Download gff for
BO04454.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12659-RC | 36..371 | 10..348 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:40:33 Download gff for
BO04454.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 8591300..8591502 | 10..215 | 98 | <- | Plus |
X | 8591562..8591694 | 216..348 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:29:14 Download gff for
BO04454.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 8485333..8485535 | 10..215 | 98 | <- | Plus |
arm_X | 8485595..8485727 | 216..348 | 100 | | Plus |
BO04454.5prime Sequence
362 bp (361 high quality bases) assembled on 2005-11-29
> BO04454.5prime
GAAGTTATCAGTCGACATGGAACAAAATGCGAAGCCTAAACGCTCCTTTA
AGCGTCCGTTTACCTTTCCAAAGAACTGTGTTTACCGCCCTCTACGTCAG
ATAAGCAACATGGAGCGTAGCCAGAAGCTGTCCGCCGAACAACCCACCTA
CTTCACGCTCAATGCACCGCCCTCGTTGGTTCCGGCCAAGAAGTACTCGG
ATATCAGCGGTCTGCCCGCTCCTTATGCCGATCCGCACACGAAACTAAGG
TTCGCCAGCGCCGACGAGTACGCGTCCATGCAGCACATGCCCTCGGACAT
CGTCAATGGCTACCTCATGGTGCGCGGCTATACCAGCGCCGTGGGAGCAA
GCTTTCTAGACC
BO04454.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:05:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12659-PB | 333 | CG12659-RB | 1..330 | 17..346 | 1650 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 05:34:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12659-RC | 896 | CG12659-RC | 36..365 | 17..346 | 1650 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 05:34:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 8591306..8591502 | 346..150 | 985 | 100 | Minus |
X | 23542271 | X | 8591562..8591694 | 149..17 | 665 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 05:34:38 has no hits.
BO04454.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:03:24 Download gff for
BO04454.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12659-PB | 1..333 | 17..347 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:16:43 Download gff for
BO04454.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12659-PB | 1..333 | 17..347 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 17:54:01 Download gff for
BO04454.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12659-RC | 36..371 | 17..355 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:48:02 Download gff for
BO04454.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12659-RC | 36..371 | 17..355 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 07:48:02 Download gff for
BO04454.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 8591300..8591502 | 150..355 | 98 | <- | Minus |
X | 8591562..8591694 | 17..149 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 17:54:01 Download gff for
BO04454.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 8485333..8485535 | 150..355 | 98 | <- | Minus |
arm_X | 8485595..8485727 | 17..149 | 100 | | Minus |
BO04454.complete Sequence
364 bp (364 high quality bases) assembled on 2005-10-17
GenBank Submission: FJ629772
> BO04454.complete
GAAGTTATCAGTCGACATGGAACAAAATGCGAAGCCTAAACGCTCCTTTA
AGCGTCCGTTTACCTTTCCAAAGAACTGTGTTTACCGCCCTCTACGTCAG
ATAAGCAACATGGAGCGTAGCCAGAAGCTGTCCGCCGAACAACCCACCTA
CTTCACGCTCAATGCACCGCCCTCGTTGGTTCCGGCCAAGAAGTACTCGG
ATATCAGCGGTCTGCCCGCTCCTTATGCCGATCCGCACACGAAACTAAGG
TTCGCCAGCGCCGACGAGTACGCGTCCATGCAGCACATGCCCTCGGACAT
CGTCAATGGCTACCTCATGGTGCGCGGCTATACCAGCGCCGTGGGAGCAA
GCTTTCTAGACCAT
BO04454.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:34:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12659-RC | 333 | CG12659-PC | 1..330 | 17..346 | 1650 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:34:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12659-RC | 896 | CG12659-RC | 36..365 | 17..346 | 1650 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:34:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 8591306..8591502 | 346..150 | 985 | 100 | Minus |
X | 23542271 | X | 8591562..8591694 | 149..17 | 665 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:34:09 has no hits.
BO04454.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:40:40 Download gff for
BO04454.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12659-RB | 1..333 | 17..347 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:02:52 Download gff for
BO04454.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12659-RB | 298..633 | 17..355 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:54:49 Download gff for
BO04454.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12659-RC | 36..365 | 17..348 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:40:41 Download gff for
BO04454.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12659-RB | 298..633 | 17..355 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:22:47 Download gff for
BO04454.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12659-RC | 36..365 | 17..348 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:22:47 Download gff for
BO04454.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 8591304..8591502 | 150..348 | 98 | <- | Minus |
X | 8591562..8591694 | 17..149 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:54:49 Download gff for
BO04454.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 8485337..8485535 | 150..348 | 98 | <- | Minus |
arm_X | 8485595..8485727 | 17..149 | 100 | | Minus |
BO04454.pep Sequence
Translation from 16 to 364
> BO04454.pep
MEQNAKPKRSFKRPFTFPKNCVYRPLRQISNMERSQKLSAEQPTYFTLNA
PPSLVPAKKYSDISGLPAPYADPHTKLRFASADEYASMQHMPSDIVNGYL
MVRGYTSAVGASFLDH
BO04454.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:52:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12659-PC | 110 | CG12659-PC | 1..110 | 1..110 | 580 | 100 | Plus |