Clone Sequence Records
BO04465.5prime Sequence
581 bp (580 high quality bases) assembled on 2005-11-29
> BO04465.5prime
GAAGTTATCAGTCGACATGTCCTCGCCCAGTGCCGGAAAGCGACGCATGG
ACAACGATGTGATCAAGCTGATCGAATCAAAGCACGAGGTGACCATCCTG
GGAGGCCTCAACGAGTTCCACGTCAAGTTCTTCGGTCCAACGGAGACGCC
CTACGAGGGCGGCGTGTGGAAGGTGCGCGTCTACCTGCCCGACAACTATC
CCTTCAAGTCACCGAGCATTGGTTTTGTGAACAAGATCTACCATCCGAAC
ATTGACGAATCCTCGGGTACGGTGTGCCTGGATGTTATCAATCAGGCCTG
GACGGCGTTGTACGATCTATCGAACATATTTGAATCGTTCTTGCCGCAGC
TGCTCACATATCCCAATCCGGTCGATCCGCTCAATCGGGATGCGGCCGCA
TTGTACCTGCACGAGCCGGAGGAGTATCATCGCAAGGTGGCCGACTATGT
GCAGCGCTATGCCACCGAGGACGCGTTGCGGGCGGCGCAGCAGGAGCGGG
AGAGCAGCGACAGCGAGTCGAGCATGTCCGACTACAGTGAGGATGAGGCC
AGGGACATGGAATTAGCAAGCTTTCTAGACC
BO04465.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:05:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2257-PA | 552 | Ubc-E2H-RA | 1..549 | 17..565 | 2745 | 100 | Plus |
CG2257-PC | 552 | Ubc-E2H-RC | 1..549 | 17..565 | 2745 | 100 | Plus |
CG2257-PB | 552 | Ubc-E2H-RB | 1..549 | 17..565 | 2745 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 05:34:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
UbcE2H-RB | 2292 | CG2257-RB | 441..989 | 17..565 | 2745 | 100 | Plus |
UbcE2H-RC | 2328 | CG2257-RC | 477..1025 | 17..565 | 2745 | 100 | Plus |
UbcE2H-RA | 2894 | CG2257-RA | 578..1126 | 17..565 | 2745 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 05:34:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 8089312..8089860 | 565..17 | 2745 | 100 | Minus |
Blast to na_te.dros performed 2015-02-13 05:34:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\Paris | 1730 | Dvir\Paris TV1 1730bp Derived from Z49253. | 984..1035 | 16..67 | 107 | 67.3 | Plus |
BO04465.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:03:33 Download gff for
BO04465.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2257-PC | 1..552 | 17..569 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:16:55 Download gff for
BO04465.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2257-PB | 1..552 | 17..569 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 17:54:03 Download gff for
BO04465.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ubc-E2H-RA | 571..1129 | 9..569 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:48:18 Download gff for
BO04465.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
UbcE2H-RA | 571..1129 | 9..569 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 07:48:18 Download gff for
BO04465.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 8089309..8089867 | 9..569 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 17:54:03 Download gff for
BO04465.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 7983342..7983900 | 9..569 | 98 | | Minus |
BO04465.3prime Sequence
581 bp (580 high quality bases) assembled on 2005-12-01
> BO04465.3prime
ATGGTCTAGAAAGCTTGCTAATTCCATGTCCCTGGCCTCATCCTCACTGT
AGTCGGACATGCTCGACTCGCTGTCGCTGCTCTCCCGCTCCTGCTGCGCC
GCCCGCAACGCGTCCTCGGTGGCATAGCGCTGCACATAGTCGGCCACCTT
GCGATGATACTCCTCCGGCTCGTGCAGGTACAATGCGGCCGCATCCCGAT
TGAGCGGATCGACCGGATTGGGATATGTGAGCAGCTGCGGCAAGAACGAT
TCAAATATGTTCGATAGATCGTACAACGCCGTCCAGGCCTGATTGATAAC
ATCCAGGCACACCGTACCCGAGGATTCGTCAATGTTCGGATGGTAGATCT
TGTTCACAAAACCAATGCTCGGTGACTTGAAGGGATAGTTGTCGGGCAGG
TAGACGCGCACCTTCCACACGCCGCCCTCGTAGGGCGTCTCCGTTGGACC
GAAGAACTTGACGTGGAACTCGTTGAGGCCTCCCAGGATGGTCACCTCGT
GCTTTGATTCGATCAGCTTGATCACATCGTTGTCCATGCGTCGCTTTCCG
GCACTGGGCGAGGACATGTCGACTGATAACT
BO04465.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:05:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2257-PA | 552 | Ubc-E2H-RA | 1..549 | 567..19 | 2745 | 100 | Minus |
CG2257-PC | 552 | Ubc-E2H-RC | 1..549 | 567..19 | 2745 | 100 | Minus |
CG2257-PB | 552 | Ubc-E2H-RB | 1..549 | 567..19 | 2745 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:06:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
UbcE2H-RB | 2292 | CG2257-RB | 441..989 | 567..19 | 2745 | 100 | Minus |
UbcE2H-RC | 2328 | CG2257-RC | 477..1025 | 567..19 | 2745 | 100 | Minus |
UbcE2H-RA | 2894 | CG2257-RA | 578..1126 | 567..19 | 2745 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 02:06:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 8089312..8089860 | 19..567 | 2745 | 100 | Plus |
Blast to na_te.dros performed 2015-02-13 02:06:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\Paris | 1730 | Dvir\Paris TV1 1730bp Derived from Z49253. | 984..1035 | 568..517 | 107 | 67.3 | Minus |
BO04465.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:03:32 Download gff for
BO04465.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2257-PC | 1..552 | 15..567 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:16:54 Download gff for
BO04465.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2257-PB | 1..552 | 15..567 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 06:34:34 Download gff for
BO04465.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ubc-E2H-RA | 571..1129 | 15..575 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:36:12 Download gff for
BO04465.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
UbcE2H-RA | 571..1129 | 15..575 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:36:12 Download gff for
BO04465.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 8089309..8089867 | 15..575 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 06:34:34 Download gff for
BO04465.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 7983342..7983900 | 15..575 | 98 | | Plus |
BO04465.complete Sequence
583 bp (583 high quality bases) assembled on 2005-09-08
GenBank Submission: FJ629773
> BO04465.complete
GAAGTTATCAGTCGACATGTCCTCGCCCAGTGCCGGAAAGCGACGCATGG
ACAACGATGTGATCAAGCTGATCGAATCAAAGCACGAGGTGACCATCCTG
GGAGGCCTCAACGAGTTCCACGTCAAGTTCTTCGGTCCAACGGAGACGCC
CTACGAGGGCGGCGTGTGGAAGGTGCGCGTCTACCTGCCCGACAACTATC
CCTTCAAGTCACCGAGCATTGGTTTTGTGAACAAGATCTACCATCCGAAC
ATTGACGAATCCTCGGGTACGGTGTGCCTGGATGTTATCAATCAGGCCTG
GACGGCGTTGTACGATCTATCGAACATATTTGAATCGTTCTTGCCGCAGC
TGCTCACATATCCCAATCCGGTCGATCCGCTCAATCGGGATGCGGCCGCA
TTGTACCTGCACGAGCCGGAGGAGTATCATCGCAAGGTGGCCGACTATGT
GCAGCGCTATGCCACCGAGGACGCGTTGCGGGCGGCGCAGCAGGAGCGGG
AGAGCAGCGACAGCGAGTCGAGCATGTCCGACTACAGTGAGGATGAGGCC
AGGGACATGGAATTAGCAAGCTTTCTAGACCAT
BO04465.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:40:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
UbcE2H-RB | 552 | CG2257-PB | 1..549 | 17..565 | 2745 | 100 | Plus |
UbcE2H-RC | 552 | CG2257-PC | 1..549 | 17..565 | 2745 | 100 | Plus |
UbcE2H-RA | 552 | CG2257-PA | 1..549 | 17..565 | 2745 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:40:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
UbcE2H-RB | 2292 | CG2257-RB | 441..989 | 17..565 | 2745 | 100 | Plus |
UbcE2H-RC | 2328 | CG2257-RC | 477..1025 | 17..565 | 2745 | 100 | Plus |
UbcE2H-RA | 2894 | CG2257-RA | 578..1126 | 17..565 | 2745 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:40:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 8089312..8089860 | 565..17 | 2745 | 100 | Minus |
Blast to na_te.dros performed 2014-11-27 14:40:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\Paris | 1730 | Dvir\Paris TV1 1730bp Derived from Z49253. | 984..1035 | 16..67 | 107 | 67.3 | Plus |
BO04465.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:02:11 Download gff for
BO04465.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ubc-E2H-RB | 1..552 | 17..569 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:34:37 Download gff for
BO04465.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ubc-E2H-RA | 571..1129 | 9..569 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:44:05 Download gff for
BO04465.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ubc-E2H-RA | 578..1126 | 17..567 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:02:11 Download gff for
BO04465.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ubc-E2H-RB | 413..971 | 9..569 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:50:31 Download gff for
BO04465.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
UbcE2H-RA | 578..1126 | 17..567 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:50:31 Download gff for
BO04465.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 8089310..8089860 | 17..567 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:44:05 Download gff for
BO04465.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 7983343..7983893 | 17..567 | 99 | | Minus |
BO04465.pep Sequence
Translation from 16 to 583
> BO04465.pep
MSSPSAGKRRMDNDVIKLIESKHEVTILGGLNEFHVKFFGPTETPYEGGV
WKVRVYLPDNYPFKSPSIGFVNKIYHPNIDESSGTVCLDVINQAWTALYD
LSNIFESFLPQLLTYPNPVDPLNRDAAALYLHEPEEYHRKVADYVQRYAT
EDALRAAQQERESSDSESSMSDYSEDEARDMELASFLDH
BO04465.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:17:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
UbcE2H-PB | 183 | CG2257-PB | 1..183 | 1..183 | 966 | 100 | Plus |
UbcE2H-PC | 183 | CG2257-PC | 1..183 | 1..183 | 966 | 100 | Plus |
UbcE2H-PA | 183 | CG2257-PA | 1..183 | 1..183 | 966 | 100 | Plus |
CG14739-PA | 206 | CG14739-PA | 12..190 | 4..180 | 358 | 41.7 | Plus |
ben-PE | 151 | CG18319-PE | 35..151 | 34..152 | 268 | 42.9 | Plus |