Clone BO04465 Report

Search the DGRC for BO04465

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:44
Well:65
Vector:pDNR-Dual
Associated Gene/TranscriptUbc-E2H-RA
Protein status:BO04465.pep: validated full length
Sequenced Size:583

Clone Sequence Records

BO04465.5prime Sequence

581 bp (580 high quality bases) assembled on 2005-11-29

> BO04465.5prime
GAAGTTATCAGTCGACATGTCCTCGCCCAGTGCCGGAAAGCGACGCATGG
ACAACGATGTGATCAAGCTGATCGAATCAAAGCACGAGGTGACCATCCTG
GGAGGCCTCAACGAGTTCCACGTCAAGTTCTTCGGTCCAACGGAGACGCC
CTACGAGGGCGGCGTGTGGAAGGTGCGCGTCTACCTGCCCGACAACTATC
CCTTCAAGTCACCGAGCATTGGTTTTGTGAACAAGATCTACCATCCGAAC
ATTGACGAATCCTCGGGTACGGTGTGCCTGGATGTTATCAATCAGGCCTG
GACGGCGTTGTACGATCTATCGAACATATTTGAATCGTTCTTGCCGCAGC
TGCTCACATATCCCAATCCGGTCGATCCGCTCAATCGGGATGCGGCCGCA
TTGTACCTGCACGAGCCGGAGGAGTATCATCGCAAGGTGGCCGACTATGT
GCAGCGCTATGCCACCGAGGACGCGTTGCGGGCGGCGCAGCAGGAGCGGG
AGAGCAGCGACAGCGAGTCGAGCATGTCCGACTACAGTGAGGATGAGGCC
AGGGACATGGAATTAGCAAGCTTTCTAGACC

BO04465.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:05:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG2257-PA 552 Ubc-E2H-RA 1..549 17..565 2745 100 Plus
CG2257-PC 552 Ubc-E2H-RC 1..549 17..565 2745 100 Plus
CG2257-PB 552 Ubc-E2H-RB 1..549 17..565 2745 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 05:34:49
Subject Length Description Subject Range Query Range Score Percent Strand
UbcE2H-RB 2292 CG2257-RB 441..989 17..565 2745 100 Plus
UbcE2H-RC 2328 CG2257-RC 477..1025 17..565 2745 100 Plus
UbcE2H-RA 2894 CG2257-RA 578..1126 17..565 2745 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 05:34:47
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 8089312..8089860 565..17 2745 100 Minus
Blast to na_te.dros performed 2015-02-13 05:34:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\Paris 1730 Dvir\Paris TV1 1730bp Derived from Z49253. 984..1035 16..67 107 67.3 Plus

BO04465.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:03:33 Download gff for BO04465.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2257-PC 1..552 17..569 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:16:55 Download gff for BO04465.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2257-PB 1..552 17..569 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 17:54:03 Download gff for BO04465.5prime
Subject Subject Range Query Range Percent Splice Strand
Ubc-E2H-RA 571..1129 9..569 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:48:18 Download gff for BO04465.5prime
Subject Subject Range Query Range Percent Splice Strand
UbcE2H-RA 571..1129 9..569 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 07:48:18 Download gff for BO04465.5prime
Subject Subject Range Query Range Percent Splice Strand
X 8089309..8089867 9..569 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 17:54:03 Download gff for BO04465.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 7983342..7983900 9..569 98   Minus

BO04465.3prime Sequence

581 bp (580 high quality bases) assembled on 2005-12-01

> BO04465.3prime
ATGGTCTAGAAAGCTTGCTAATTCCATGTCCCTGGCCTCATCCTCACTGT
AGTCGGACATGCTCGACTCGCTGTCGCTGCTCTCCCGCTCCTGCTGCGCC
GCCCGCAACGCGTCCTCGGTGGCATAGCGCTGCACATAGTCGGCCACCTT
GCGATGATACTCCTCCGGCTCGTGCAGGTACAATGCGGCCGCATCCCGAT
TGAGCGGATCGACCGGATTGGGATATGTGAGCAGCTGCGGCAAGAACGAT
TCAAATATGTTCGATAGATCGTACAACGCCGTCCAGGCCTGATTGATAAC
ATCCAGGCACACCGTACCCGAGGATTCGTCAATGTTCGGATGGTAGATCT
TGTTCACAAAACCAATGCTCGGTGACTTGAAGGGATAGTTGTCGGGCAGG
TAGACGCGCACCTTCCACACGCCGCCCTCGTAGGGCGTCTCCGTTGGACC
GAAGAACTTGACGTGGAACTCGTTGAGGCCTCCCAGGATGGTCACCTCGT
GCTTTGATTCGATCAGCTTGATCACATCGTTGTCCATGCGTCGCTTTCCG
GCACTGGGCGAGGACATGTCGACTGATAACT

BO04465.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:05:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG2257-PA 552 Ubc-E2H-RA 1..549 567..19 2745 100 Minus
CG2257-PC 552 Ubc-E2H-RC 1..549 567..19 2745 100 Minus
CG2257-PB 552 Ubc-E2H-RB 1..549 567..19 2745 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:06:30
Subject Length Description Subject Range Query Range Score Percent Strand
UbcE2H-RB 2292 CG2257-RB 441..989 567..19 2745 100 Minus
UbcE2H-RC 2328 CG2257-RC 477..1025 567..19 2745 100 Minus
UbcE2H-RA 2894 CG2257-RA 578..1126 567..19 2745 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 02:06:24
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 8089312..8089860 19..567 2745 100 Plus
Blast to na_te.dros performed 2015-02-13 02:06:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\Paris 1730 Dvir\Paris TV1 1730bp Derived from Z49253. 984..1035 568..517 107 67.3 Minus

BO04465.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:03:32 Download gff for BO04465.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2257-PC 1..552 15..567 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:16:54 Download gff for BO04465.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2257-PB 1..552 15..567 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 06:34:34 Download gff for BO04465.3prime
Subject Subject Range Query Range Percent Splice Strand
Ubc-E2H-RA 571..1129 15..575 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:36:12 Download gff for BO04465.3prime
Subject Subject Range Query Range Percent Splice Strand
UbcE2H-RA 571..1129 15..575 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:36:12 Download gff for BO04465.3prime
Subject Subject Range Query Range Percent Splice Strand
X 8089309..8089867 15..575 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 06:34:34 Download gff for BO04465.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 7983342..7983900 15..575 98   Plus

BO04465.complete Sequence

583 bp (583 high quality bases) assembled on 2005-09-08

GenBank Submission: FJ629773

> BO04465.complete
GAAGTTATCAGTCGACATGTCCTCGCCCAGTGCCGGAAAGCGACGCATGG
ACAACGATGTGATCAAGCTGATCGAATCAAAGCACGAGGTGACCATCCTG
GGAGGCCTCAACGAGTTCCACGTCAAGTTCTTCGGTCCAACGGAGACGCC
CTACGAGGGCGGCGTGTGGAAGGTGCGCGTCTACCTGCCCGACAACTATC
CCTTCAAGTCACCGAGCATTGGTTTTGTGAACAAGATCTACCATCCGAAC
ATTGACGAATCCTCGGGTACGGTGTGCCTGGATGTTATCAATCAGGCCTG
GACGGCGTTGTACGATCTATCGAACATATTTGAATCGTTCTTGCCGCAGC
TGCTCACATATCCCAATCCGGTCGATCCGCTCAATCGGGATGCGGCCGCA
TTGTACCTGCACGAGCCGGAGGAGTATCATCGCAAGGTGGCCGACTATGT
GCAGCGCTATGCCACCGAGGACGCGTTGCGGGCGGCGCAGCAGGAGCGGG
AGAGCAGCGACAGCGAGTCGAGCATGTCCGACTACAGTGAGGATGAGGCC
AGGGACATGGAATTAGCAAGCTTTCTAGACCAT

BO04465.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:40:54
Subject Length Description Subject Range Query Range Score Percent Strand
UbcE2H-RB 552 CG2257-PB 1..549 17..565 2745 100 Plus
UbcE2H-RC 552 CG2257-PC 1..549 17..565 2745 100 Plus
UbcE2H-RA 552 CG2257-PA 1..549 17..565 2745 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:40:55
Subject Length Description Subject Range Query Range Score Percent Strand
UbcE2H-RB 2292 CG2257-RB 441..989 17..565 2745 100 Plus
UbcE2H-RC 2328 CG2257-RC 477..1025 17..565 2745 100 Plus
UbcE2H-RA 2894 CG2257-RA 578..1126 17..565 2745 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:40:52
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 8089312..8089860 565..17 2745 100 Minus
Blast to na_te.dros performed 2014-11-27 14:40:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\Paris 1730 Dvir\Paris TV1 1730bp Derived from Z49253. 984..1035 16..67 107 67.3 Plus

BO04465.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:02:11 Download gff for BO04465.complete
Subject Subject Range Query Range Percent Splice Strand
Ubc-E2H-RB 1..552 17..569 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:34:37 Download gff for BO04465.complete
Subject Subject Range Query Range Percent Splice Strand
Ubc-E2H-RA 571..1129 9..569 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:44:05 Download gff for BO04465.complete
Subject Subject Range Query Range Percent Splice Strand
Ubc-E2H-RA 578..1126 17..567 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:02:11 Download gff for BO04465.complete
Subject Subject Range Query Range Percent Splice Strand
Ubc-E2H-RB 413..971 9..569 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:50:31 Download gff for BO04465.complete
Subject Subject Range Query Range Percent Splice Strand
UbcE2H-RA 578..1126 17..567 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:50:31 Download gff for BO04465.complete
Subject Subject Range Query Range Percent Splice Strand
X 8089310..8089860 17..567 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:44:05 Download gff for BO04465.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 7983343..7983893 17..567 99   Minus

BO04465.pep Sequence

Translation from 16 to 583

> BO04465.pep
MSSPSAGKRRMDNDVIKLIESKHEVTILGGLNEFHVKFFGPTETPYEGGV
WKVRVYLPDNYPFKSPSIGFVNKIYHPNIDESSGTVCLDVINQAWTALYD
LSNIFESFLPQLLTYPNPVDPLNRDAAALYLHEPEEYHRKVADYVQRYAT
EDALRAAQQERESSDSESSMSDYSEDEARDMELASFLDH

BO04465.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:17:49
Subject Length Description Subject Range Query Range Score Percent Strand
UbcE2H-PB 183 CG2257-PB 1..183 1..183 966 100 Plus
UbcE2H-PC 183 CG2257-PC 1..183 1..183 966 100 Plus
UbcE2H-PA 183 CG2257-PA 1..183 1..183 966 100 Plus
CG14739-PA 206 CG14739-PA 12..190 4..180 358 41.7 Plus
ben-PE 151 CG18319-PE 35..151 34..152 268 42.9 Plus