Clone Sequence Records
BO04467.3prime Sequence
769 bp (767 high quality bases) assembled on 2005-12-01
> BO04467.3prime
ATGGTCTAGAAAGCTTGCATCTTCTTGCGCTTGGTAAATGTTCTGATTGC
GTCGCTTAAGTTTTTTCACATTGGGACTAGCGGGCACTGATGCAGGTTCC
TCTACATGAGGCGTTTCCGTTGCTATAATTGCTTCTTCAGCTTCCTCCTC
GGGCAGGTCTATCACGTTTTCATCGGTGGTATCAGCTGCTGCAGTTGTAG
GTGCTGGCAGGGATAAGTTAAGTTTCCTTTTAGTTGGCGTAACCAATGGT
TCAGCCACGTCTTCTTCCACCGCCTGCAGCTTAGAACTTTTTGTTTCCCT
ATCCTTGCATTCGGTAGCTCCCACCGCAGGCAGATCTAGGCCATTCGCCA
ACAAAACTAAGCACAGCGGATCGTCTATACCCAGAGTGGCACAGAACGTA
TTGCTCTGGGGGTTTAGTTGAACCTTGGGTTGATCCACAAACATGTGCTT
ATAATCAGACTGCTCCGCGGGATCGAAAGCTGGCACTGTGCGCTCAAAGT
TCTCGGGGACTTGAAGTTTCTGAAACTTTGCGGTCACTGCTTCTAGTTCT
TCTTCAGTGGGGGTAAAGTTTGATCGCTCTGTAAACTCTCCCGCCTTTTT
TCCGGGCAGGTAATAATAATTCTCCTTCACTGAAATCAAGTGATTTGTAC
TGTGCAAGATGGCTAGCCACTCTGCGTCGTATTCCAGGCGGGGAGTGCCT
TCGATGGGGTCACTGGGTACCTCTACCACTTGCAGGAAAGCACGACGTGG
CAGGCATTTGTCGAGAGCC
BO04467.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:05:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7942-PA | 1605 | CG7942-RA | 852..1602 | 769..19 | 3755 | 100 | Minus |
| CG7942-PB | 1605 | CG7942-RB | 852..1602 | 769..19 | 3755 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 18:35:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ldbr-RB | 1734 | CG7942-RB | 944..1694 | 769..19 | 3755 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 18:35:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 8122825..8123575 | 769..19 | 3755 | 100 | Minus |
Blast to na_te.dros performed 2015-02-09 18:35:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Doc3-element | 4740 | Doc3-element DOC3 4740bp | 29..81 | 661..609 | 129 | 75.9 | Minus |
BO04467.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:03:35 Download gff for
BO04467.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7942-PA | 852..1605 | 15..769 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:16:59 Download gff for
BO04467.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7942-PB | 852..1605 | 15..769 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 03:58:45 Download gff for
BO04467.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ldbr-RB | 944..1697 | 15..769 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 21:12:49 Download gff for
BO04467.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ldbr-RB | 944..1697 | 15..769 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 21:12:49 Download gff for
BO04467.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 8122825..8123578 | 15..769 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 03:58:45 Download gff for
BO04467.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 8115925..8116678 | 15..769 | 99 | | Minus |
BO04467.5prime Sequence
800 bp (763 high quality bases) assembled on 2005-12-01
> BO04467.5prime
GAAGTTATCAGTCGACATGAAAATAGCTGTCGAAGGATGTGCACATGGCG
AGCTGGAACGAATATACGACACCATAGAGGGCATCGAAAAGGTTGGCGGC
ACCAAGATCGACTTGTTATTGTGCTGTGGCGATTTTCAGTCCACCCGGAA
TCTGGAGGATTTGCAGACGATGGCTGTACCAAAGAAGTACCTGGATATGT
GCTCCTTTTACAAATACTACAGTGGCGAGCTGGTAGCACCAGTGCTGACC
ATATTCATTGGCGGCAACCATGAGGCCTCCAATTACCTGCAGGAGCTCCC
ATACGGCGGTTGGGTGGCTCCAAATATTTACTACCTTGGTTATGCCGGCG
TCGTCAATGTAAACGGTGTTCGGATAGCTGGAATAAGCGGAATCTTCAAG
GGTCACGACTTTTTGCGCGGCCATCACGAATTCCCTCCGTATACCGATTC
CACGTGTCGCAGTGTCTACCATGTGCGGCAGCTAGAAGTCTTTCGGCTGA
AACAAATTTCCGGGCGAGTTGATATTTTCCTGTCCCACGACTGGCCCACC
GGCATCTATGAATACGGAAACAAGGCGCAACTGCTCCGCAAGAAACCATT
TTTTGCTGCAGACATGGAAAGCGGGAAGCTGGGTAGCCAGCCACTGGAGG
AGTTACTGAAAGCGGTCCAACCGGCCTACTGGTTTGCTGCCCATTTGCAT
TGCAAGTTTGCCGCTTTGGTGCCGCACAATCACAGCCAGAAGCTAGGAGA
TGCTGAATCTTCCTCTTCCAGCCGCAGCAGTGAAGATGAAGACGAGGAAA
BO04467.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:05:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7942-PA | 1605 | CG7942-RA | 1..784 | 17..800 | 3895 | 99.8 | Plus |
| CG7942-PB | 1605 | CG7942-RB | 1..784 | 17..800 | 3895 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 02:27:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ldbr-RB | 1734 | CG7942-RB | 92..876 | 16..800 | 3910 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 02:27:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 8122163..8122757 | 206..800 | 2930 | 99.5 | Plus |
| 3L | 28110227 | 3L | 8121918..8122115 | 16..213 | 990 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 02:27:13 has no hits.
BO04467.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:03:36 Download gff for
BO04467.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7942-PA | 1..781 | 17..797 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:17:00 Download gff for
BO04467.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7942-PB | 1..781 | 17..797 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 20:47:44 Download gff for
BO04467.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ldbr-RB | 92..873 | 16..797 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:20:52 Download gff for
BO04467.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ldbr-RB | 92..873 | 16..797 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:20:52 Download gff for
BO04467.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 8121918..8122115 | 16..213 | 100 | -> | Plus |
| 3L | 8122171..8122754 | 214..797 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 20:47:44 Download gff for
BO04467.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 8115018..8115215 | 16..213 | 100 | -> | Plus |
| arm_3L | 8115271..8115854 | 214..797 | 99 | | Plus |
BO04467.complete Sequence
1636 bp (1636 high quality bases) assembled on 2006-08-17
GenBank Submission: FJ629774
> BO04467.complete
GAAGTTATCAGTCGACATGAAAATAGCTGTCGAAGGATGTGCACATGGCG
AGCTGGAACGAATATACGACACCATAGAGGGCATCGAAAAGGTTGGCGGC
ACCAAGATCGACTTGTTATTGTGCTGTGGCGATTTTCAGTCCACCCGGAA
TCTGGAGGATTTGCAGACGATGGCTGTACCAAAGAAGTACCTGGATATGT
GCTCCTTTTACAAATACTACAGTGGCGAGCTGGTAGCACCAGTGCTGACC
ATATTCATTGGCGGCAACCATGAGGCCTCCAATTACCTGCAGGAGCTCCC
ATACGGCGGTTGGGTGGCTCCAAATATTTACTACCTTGGTTATGCCGGCG
TCGTCAATGTAAACGGTGTTCGGATAGCTGGAATAAGCGGAATCTTCAAG
GGTCACGACTTTTTGCGCGGCCATCACGAATTCCCTCCGTATACCGATTC
CACGTGTCGCAGTGTCTACCATGTGCGGCAGCTAGAAGTCTTTCGGCTGA
AACAAATTTCCGGGCGAGTTGATATTTTCCTGTCCCACGACTGGCCCACC
GGCATCTATGAATACGGAAACAAGGCGCAACTGCTCCGCAAGAAACCATT
TTTTGCTGCAGACATGGAAAGCGGGAAGCTGGGTAGCCAGCCACTGGAGG
AGTTACTGAAAGCGGTCCAACCGGCCTACTGGTTTGCTGCCCATTTGCAT
TGCAAGTTTGCCGCTTTGGTGCCGCACAATCACAGCCAGAAGCTAGGAGA
TGCTGAATCTTCCTCTTCCAGCAGCAGCAGTGAAGATGAAGACGAGGAAA
GGGAGAAGGTAAAGAAAGCTGCTCCTGTACCTCCACCATCCAAATCTGTT
CCCGTGACCAAGTTTCTGGCTCTCGACAAATGCCTGCCACGTCGTGCTTT
CCTGCAAGTGGTAGAGGTACCCAGTGACCCCATCGAAGGCACTCCCCGCC
TGGAATACGACGCAGAGTGGCTAGCCATCTTGCACAGTACAAATCACTTG
ATTTCAGTGAAGGAGAATTATTATTACCTGCCCGGAAAAAAGGCGGGAGA
GTTTACAGAGCGATCAAACTTTACCCCCACTGAAGAAGAACTAGAAGCAG
TGACCGCAAAGTTTCAGAAACTTCAAGTCCCCGAGAACTTTGAGCGCACA
GTGCCAGCTTTCGATCCCGCGGAGCAGTCTGATTATAAGCACATGTTTGT
GGATCAACCCAAGGTTCAACTAAACCCCCAGAGCAATACGTTCTGTGCCA
CTCTGGGTATAGACGATCCGCTGTGCTTAGTTTTGTTGGCGAATGGCCTA
GATCTGCCTGCGGTGGGAGCTACCGAATGCAAGGATAGGGAAACAAAAAG
TTCTAAGCTGCAGGCGGTGGAAGAAGACGTGGCTGAACCATTGGTTACGC
CAACTAAAAGGAAACTTAACTTATCCCTGCCAGCACCTACAACTGCAGCA
GCTGATACCACCGATGAAAACGTGATAGACCTGCCCGAGGAGGAAGCTGA
AGAAGCAATTATAGCAACGGAAACGCCTCATGTAGAGGAACCTGCATCAG
TGCCCGCTAGTCCCAATGTGAAAAAACTTAAGCGACGCAATCAGAACATT
TACCAAGCGCAAGAAGATGCAAGCTTTCTAGACCAT
BO04467.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:02:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ldbr-RB | 1605 | CG7942-PB | 1..1602 | 17..1618 | 8010 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:02:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ldbr-RB | 1734 | CG7942-RB | 92..1694 | 16..1618 | 8015 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:02:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 8122163..8123575 | 206..1618 | 7035 | 99.9 | Plus |
| 3L | 28110227 | 3L | 8121918..8122115 | 16..213 | 990 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 01:02:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Doc3-element | 4740 | Doc3-element DOC3 4740bp | 29..81 | 976..1028 | 129 | 75.9 | Plus |
BO04467.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:04:23 Download gff for
BO04467.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ldbr-RB | 1..1605 | 17..1622 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:23:33 Download gff for
BO04467.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ldbr-RB | 77..1682 | 16..1622 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:37:19 Download gff for
BO04467.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ldbr-RB | 93..1694 | 17..1620 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:04:24 Download gff for
BO04467.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ldbr-RB | 77..1682 | 16..1622 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:43:02 Download gff for
BO04467.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ldbr-RB | 93..1694 | 17..1620 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:43:02 Download gff for
BO04467.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 8121919..8122115 | 17..213 | 100 | -> | Plus |
| 3L | 8122171..8123575 | 214..1620 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:37:19 Download gff for
BO04467.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 8115019..8115215 | 17..213 | 100 | -> | Plus |
| arm_3L | 8115271..8116675 | 214..1620 | 99 | | Plus |
BO04467.pep Sequence
Translation from 16 to 1636
> BO04467.pep
MKIAVEGCAHGELERIYDTIEGIEKVGGTKIDLLLCCGDFQSTRNLEDLQ
TMAVPKKYLDMCSFYKYYSGELVAPVLTIFIGGNHEASNYLQELPYGGWV
APNIYYLGYAGVVNVNGVRIAGISGIFKGHDFLRGHHEFPPYTDSTCRSV
YHVRQLEVFRLKQISGRVDIFLSHDWPTGIYEYGNKAQLLRKKPFFAADM
ESGKLGSQPLEELLKAVQPAYWFAAHLHCKFAALVPHNHSQKLGDAESSS
SSSSSEDEDEEREKVKKAAPVPPPSKSVPVTKFLALDKCLPRRAFLQVVE
VPSDPIEGTPRLEYDAEWLAILHSTNHLISVKENYYYLPGKKAGEFTERS
NFTPTEEELEAVTAKFQKLQVPENFERTVPAFDPAEQSDYKHMFVDQPKV
QLNPQSNTFCATLGIDDPLCLVLLANGLDLPAVGATECKDRETKSSKLQA
VEEDVAEPLVTPTKRKLNLSLPAPTTAAADTTDENVIDLPEEEAEEAIIA
TETPHVEEPASVPASPNVKKLKRRNQNIYQAQEDASFLDH
BO04467.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:04:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ldbr-PB | 534 | CG7942-PB | 1..534 | 1..534 | 2807 | 100 | Plus |
