Clone Sequence Records
BO04468.3prime Sequence
734 bp (733 high quality bases) assembled on 2005-12-01
> BO04468.3prime
ATGGTCTAGAAAGCTTGCCTTGTCCTTCTCAGACTCGGCAGCGGCCTCGG
GCTTCTTGTTGCCAATGGGGATGGCCACTCGGATCTTGTCGGTGATTTCT
GTCAATTTGCTGCGCACCAGATCCAAGTGAGTGTCGATCGATTGCTTGTT
GTTCTCGTAGACCTTGGGCAAGGTAAACAGCGAGACAAAGGCCAAGATGA
CCAGAGTCATGCCATTGAACCAGGCACCCACGTAGGTGAAGACCCACAGA
ATGACGCCGAACTTGATCGAATCGATGATATCCTCAACAAGAAACAGACG
CCTCAGCTCGGAGATGAAGCCATTGATATGTGCCACAGCCACGCCGGCAA
TGTTCTGTACCTTTTCGTGCGACAGCGTCAGATCCAGCTCCAGGTAATCC
TTAAAGGGGTGACCCTCGTTTGTCTTTTGCACGGCCTGTGTCACAGATTT
GTAGATTCTGAAGGCGACGGTGCCGAAGAGGGTTAGGAGCGACAAGTAGG
CGAACACGCTGATCACCGAGAAGCTGGAGATGGCCGCCAGTGTGATCAGG
CCAGCGCCGAAGACAATGCCGGATTTCTTCACATCGCGCCAGTAGATAAG
GGATTCCACTTGCGGGTGCAAACGTTCGGGCTTAAACCAGGCATTGGGAT
CGAGTATGGAGCAAATCAATGGGCGCTGCTTGCACACGCCATTCTGACCG
GTTTCACCAAATGCGGACATGTCGACTGATAACT
BO04468.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:05:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33113-PE | 705 | Rtnl1-RE | 1..702 | 720..19 | 3510 | 100 | Minus |
CG33113-PB | 705 | Rtnl1-RB | 1..702 | 720..19 | 3510 | 100 | Minus |
CG33113-PA | 669 | Rtnl1-RA | 75..666 | 610..19 | 2960 | 100 | Minus |
CG33113-PF | 1788 | Rtnl1-RF | 1195..1785 | 609..19 | 2955 | 100 | Minus |
CG33113-PD | 675 | Rtnl1-RD | 83..672 | 608..19 | 2950 | 100 | Minus |
CG33113-PC | 609 | Rtnl1-RC | 17..606 | 608..19 | 2950 | 100 | Minus |
CG33113-PG | 675 | Rtnl1-RG | 83..672 | 608..19 | 2950 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:45:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rtnl1-RJ | 2311 | CG33113-RJ | 207..908 | 720..19 | 3510 | 100 | Minus |
Rtnl1-RI | 1495 | CG33113-RI | 224..925 | 720..19 | 3510 | 100 | Minus |
Rtnl1-RB | 1539 | CG33113-RB | 268..969 | 720..19 | 3510 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:45:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 4994786..4994996 | 400..610 | 1055 | 100 | Plus |
2L | 23513712 | 2L | 4994508..4994716 | 192..400 | 1045 | 100 | Plus |
2L | 23513712 | 2L | 4994338..4994445 | 85..192 | 540 | 100 | Plus |
2L | 23513712 | 2L | 5004614..5004689 | 645..720 | 380 | 100 | Plus |
2L | 23513712 | 2L | 4994211..4994277 | 19..85 | 335 | 100 | Plus |
2L | 23513712 | 2L | 5004172..5004207 | 609..644 | 180 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 23:45:06 has no hits.
BO04468.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:03:37 Download gff for
BO04468.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rtnl1-PE | 1..705 | 15..720 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:17:02 Download gff for
BO04468.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33113-PE | 1..705 | 15..720 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:36:27 Download gff for
BO04468.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rtnl1-RB | 261..974 | 14..728 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:47:23 Download gff for
BO04468.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rtnl1-RB | 261..974 | 14..728 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:47:23 Download gff for
BO04468.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 4994787..4994994 | 401..608 | 100 | <- | Plus |
2L | 5004172..5004207 | 609..644 | 100 | <- | Plus |
2L | 5004614..5004693 | 645..728 | 95 | | Plus |
2L | 4994339..4994444 | 86..191 | 100 | <- | Plus |
2L | 4994508..4994716 | 192..400 | 100 | <- | Plus |
2L | 4994206..4994277 | 14..85 | 97 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:36:27 Download gff for
BO04468.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 4994206..4994277 | 14..85 | 97 | <- | Plus |
arm_2L | 4994339..4994444 | 86..191 | 100 | <- | Plus |
arm_2L | 4994508..4994716 | 192..400 | 100 | <- | Plus |
arm_2L | 4994787..4994994 | 401..608 | 100 | <- | Plus |
arm_2L | 5004172..5004207 | 609..644 | 100 | <- | Plus |
arm_2L | 5004614..5004693 | 645..728 | 95 | | Plus |
BO04468.5prime Sequence
734 bp (733 high quality bases) assembled on 2005-11-29
> BO04468.5prime
GAAGTTATCAGTCGACATGTCCGCATTTGGTGAAACCGGTCAGAATGGCG
TGTGCAAGCAGCGCCCATTGATTTGCTCCATACTCGATCCCAATGCCTGG
TTTAAGCCCGAACGTTTGCACCCGCAAGTGGAATCCCTTATCTACTGGCG
CGATGTGAAGAAATCCGGCATTGTCTTCGGCGCTGGCCTGATCACACTGG
CGGCCATCTCCAGCTTCTCGGTGATCAGCGTGTTCGCCTACTTGTCGCTC
CTAACCCTCTTCGGCACCGTCGCCTTCAGAATCTACAAATCTGTGACACA
GGCCGTGCAAAAGACAAACGAGGGTCACCCCTTTAAGGATTACCTGGAGC
TGGATCTGACGCTGTCGCACGAAAAGGTACAGAACATTGCCGGCGTGGCT
GTGGCACATATCAATGGCTTCATCTCCGAGCTGAGGCGTCTGTTTCTTGT
TGAGGATATCATCGATTCGATCAAGTTCGGCGTCATTCTGTGGGTCTTCA
CCTACGTGGGTGCCTGGTTCAATGGCATGACTCTGGTCATCTTGGCCTTT
GTCTCGCTGTTTACCTTGCCCAAGGTCTACGAGAACAACAAGCAATCGAT
CGACACTCACTTGGATCTGGTGCGCAGCAAATTGACAGAAATCACCGACA
AGATCCGAGTGGCCATCCCCATTGGCAACAAGAAGCCCGAGGCCGCTGCC
GAGTCTGAGAAGGACAAGGCAAGCTTTCTAGACC
BO04468.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:05:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33113-PE | 705 | Rtnl1-RE | 1..702 | 17..718 | 3510 | 100 | Plus |
CG33113-PB | 705 | Rtnl1-RB | 1..702 | 17..718 | 3510 | 100 | Plus |
CG33113-PA | 669 | Rtnl1-RA | 75..666 | 127..718 | 2960 | 100 | Plus |
CG33113-PF | 1788 | Rtnl1-RF | 1195..1785 | 128..718 | 2955 | 100 | Plus |
CG33113-PD | 675 | Rtnl1-RD | 83..672 | 129..718 | 2950 | 100 | Plus |
CG33113-PC | 609 | Rtnl1-RC | 17..606 | 129..718 | 2950 | 100 | Plus |
CG33113-PG | 675 | Rtnl1-RG | 83..672 | 129..718 | 2950 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:06:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rtnl1-RJ | 2311 | CG33113-RJ | 207..908 | 17..718 | 3510 | 100 | Plus |
Rtnl1-RI | 1495 | CG33113-RI | 224..925 | 17..718 | 3510 | 100 | Plus |
Rtnl1-RB | 1539 | CG33113-RB | 268..969 | 17..718 | 3510 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 02:06:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 4994786..4994996 | 337..127 | 1055 | 100 | Minus |
2L | 23513712 | 2L | 4994508..4994716 | 545..337 | 1045 | 100 | Minus |
2L | 23513712 | 2L | 4994338..4994445 | 652..545 | 540 | 100 | Minus |
2L | 23513712 | 2L | 5004614..5004689 | 92..17 | 380 | 100 | Minus |
2L | 23513712 | 2L | 4994211..4994277 | 718..652 | 335 | 100 | Minus |
2L | 23513712 | 2L | 5004172..5004207 | 128..93 | 180 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 02:06:35 has no hits.
BO04468.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:03:38 Download gff for
BO04468.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rtnl1-PE | 1..705 | 17..722 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:17:03 Download gff for
BO04468.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33113-PE | 1..705 | 17..722 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 06:34:36 Download gff for
BO04468.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rtnl1-RB | 261..974 | 9..723 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:37:02 Download gff for
BO04468.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rtnl1-RB | 261..974 | 9..723 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:37:02 Download gff for
BO04468.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 4994206..4994277 | 652..723 | 97 | <- | Minus |
2L | 4994339..4994444 | 546..651 | 100 | <- | Minus |
2L | 4994508..4994716 | 337..545 | 100 | <- | Minus |
2L | 4994787..4994994 | 129..336 | 100 | <- | Minus |
2L | 5004172..5004207 | 93..128 | 100 | <- | Minus |
2L | 5004614..5004693 | 9..92 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 06:34:36 Download gff for
BO04468.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 4994206..4994277 | 652..723 | 97 | <- | Minus |
arm_2L | 4994339..4994444 | 546..651 | 100 | <- | Minus |
arm_2L | 4994508..4994716 | 337..545 | 100 | <- | Minus |
arm_2L | 4994787..4994994 | 129..336 | 100 | <- | Minus |
arm_2L | 5004172..5004207 | 93..128 | 100 | <- | Minus |
arm_2L | 5004614..5004693 | 9..92 | 95 | | Minus |
BO04468.complete Sequence
736 bp (736 high quality bases) assembled on 2005-09-08
GenBank Submission: FJ629775
> BO04468.complete
GAAGTTATCAGTCGACATGTCCGCATTTGGTGAAACCGGTCAGAATGGCG
TGTGCAAGCAGCGCCCATTGATTTGCTCCATACTCGATCCCAATGCCTGG
TTTAAGCCCGAACGTTTGCACCCGCAAGTGGAATCCCTTATCTACTGGCG
CGATGTGAAGAAATCCGGCATTGTCTTCGGCGCTGGCCTGATCACACTGG
CGGCCATCTCCAGCTTCTCGGTGATCAGCGTGTTCGCCTACTTGTCGCTC
CTAACCCTCTTCGGCACCGTCGCCTTCAGAATCTACAAATCTGTGACACA
GGCCGTGCAAAAGACAAACGAGGGTCACCCCTTTAAGGATTACCTGGAGC
TGGATCTGACGCTGTCGCACGAAAAGGTACAGAACATTGCCGGCGTGGCT
GTGGCACATATCAATGGCTTCATCTCCGAGCTGAGGCGTCTGTTTCTTGT
TGAGGATATCATCGATTCGATCAAGTTCGGCGTCATTCTGTGGGTCTTCA
CCTACGTGGGTGCCTGGTTCAATGGCATGACTCTGGTCATCTTGGCCTTT
GTCTCGCTGTTTACCTTGCCCAAGGTCTACGAGAACAACAAGCAATCGAT
CGACACTCACTTGGATCTGGTGCGCAGCAAATTGACAGAAATCACCGACA
AGATCCGAGTGGCCATCCCCATTGGCAACAAGAAGCCCGAGGCCGCTGCC
GAGTCTGAGAAGGACAAGGCAAGCTTTCTAGACCAT
BO04468.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:36:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rtnl1-RJ | 705 | CG33113-PJ | 1..702 | 17..718 | 3510 | 100 | Plus |
Rtnl1-RI | 705 | CG33113-PI | 1..702 | 17..718 | 3510 | 100 | Plus |
Rtnl1-RB | 705 | CG33113-PB | 1..702 | 17..718 | 3510 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:36:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rtnl1-RJ | 2311 | CG33113-RJ | 207..908 | 17..718 | 3510 | 100 | Plus |
Rtnl1-RI | 1495 | CG33113-RI | 224..925 | 17..718 | 3510 | 100 | Plus |
Rtnl1-RB | 1539 | CG33113-RB | 268..969 | 17..718 | 3510 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:35:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 4994786..4994996 | 337..127 | 1055 | 100 | Minus |
2L | 23513712 | 2L | 4994508..4994716 | 545..337 | 1045 | 100 | Minus |
2L | 23513712 | 2L | 4994338..4994445 | 652..545 | 540 | 100 | Minus |
2L | 23513712 | 2L | 5004614..5004689 | 92..17 | 380 | 100 | Minus |
2L | 23513712 | 2L | 4994211..4994277 | 718..652 | 335 | 100 | Minus |
2L | 23513712 | 2L | 5004172..5004207 | 128..93 | 180 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 08:36:00 has no hits.
BO04468.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:40:45 Download gff for
BO04468.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rtnl1-RB | 1..705 | 17..722 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:59:22 Download gff for
BO04468.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rtnl1-RB | 266..967 | 17..720 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:23:39 Download gff for
BO04468.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rtnl1-RB | 268..969 | 17..720 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:40:46 Download gff for
BO04468.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rtnl1-RB | 259..972 | 9..723 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:21:18 Download gff for
BO04468.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rtnl1-RB | 268..969 | 17..720 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:21:18 Download gff for
BO04468.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 4994209..4994277 | 652..720 | 97 | <- | Minus |
2L | 4994339..4994444 | 546..651 | 100 | <- | Minus |
2L | 4994508..4994716 | 337..545 | 100 | <- | Minus |
2L | 4994787..4994994 | 129..336 | 100 | <- | Minus |
2L | 5004172..5004207 | 93..128 | 100 | <- | Minus |
2L | 5004614..5004689 | 17..92 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:23:39 Download gff for
BO04468.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 4994209..4994277 | 652..720 | 97 | <- | Minus |
arm_2L | 4994339..4994444 | 546..651 | 100 | <- | Minus |
arm_2L | 4994508..4994716 | 337..545 | 100 | <- | Minus |
arm_2L | 4994787..4994994 | 129..336 | 100 | <- | Minus |
arm_2L | 5004172..5004207 | 93..128 | 100 | <- | Minus |
arm_2L | 5004614..5004689 | 17..92 | 100 | | Minus |
BO04468.pep Sequence
Translation from 16 to 736
> BO04468.pep
MSAFGETGQNGVCKQRPLICSILDPNAWFKPERLHPQVESLIYWRDVKKS
GIVFGAGLITLAAISSFSVISVFAYLSLLTLFGTVAFRIYKSVTQAVQKT
NEGHPFKDYLELDLTLSHEKVQNIAGVAVAHINGFISELRRLFLVEDIID
SIKFGVILWVFTYVGAWFNGMTLVILAFVSLFTLPKVYENNKQSIDTHLD
LVRSKLTEITDKIRVAIPIGNKKPEAAAESEKDKASFLDH
BO04468.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:34:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rtnl1-PJ | 234 | CG33113-PJ | 1..234 | 1..234 | 1192 | 100 | Plus |
Rtnl1-PI | 234 | CG33113-PI | 1..234 | 1..234 | 1192 | 100 | Plus |
Rtnl1-PB | 234 | CG33113-PB | 1..234 | 1..234 | 1192 | 100 | Plus |
Rtnl1-PE | 234 | CG33113-PE | 1..234 | 1..234 | 1192 | 100 | Plus |
Rtnl1-PL | 222 | CG33113-PL | 1..222 | 1..234 | 1093 | 94.4 | Plus |