Clone BO04468 Report

Search the DGRC for BO04468

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:44
Well:68
Vector:pDNR-Dual
Associated Gene/TranscriptRtnl1-RB
Protein status:BO04468.pep: validated full length
Sequenced Size:736

Clone Sequence Records

BO04468.3prime Sequence

734 bp (733 high quality bases) assembled on 2005-12-01

> BO04468.3prime
ATGGTCTAGAAAGCTTGCCTTGTCCTTCTCAGACTCGGCAGCGGCCTCGG
GCTTCTTGTTGCCAATGGGGATGGCCACTCGGATCTTGTCGGTGATTTCT
GTCAATTTGCTGCGCACCAGATCCAAGTGAGTGTCGATCGATTGCTTGTT
GTTCTCGTAGACCTTGGGCAAGGTAAACAGCGAGACAAAGGCCAAGATGA
CCAGAGTCATGCCATTGAACCAGGCACCCACGTAGGTGAAGACCCACAGA
ATGACGCCGAACTTGATCGAATCGATGATATCCTCAACAAGAAACAGACG
CCTCAGCTCGGAGATGAAGCCATTGATATGTGCCACAGCCACGCCGGCAA
TGTTCTGTACCTTTTCGTGCGACAGCGTCAGATCCAGCTCCAGGTAATCC
TTAAAGGGGTGACCCTCGTTTGTCTTTTGCACGGCCTGTGTCACAGATTT
GTAGATTCTGAAGGCGACGGTGCCGAAGAGGGTTAGGAGCGACAAGTAGG
CGAACACGCTGATCACCGAGAAGCTGGAGATGGCCGCCAGTGTGATCAGG
CCAGCGCCGAAGACAATGCCGGATTTCTTCACATCGCGCCAGTAGATAAG
GGATTCCACTTGCGGGTGCAAACGTTCGGGCTTAAACCAGGCATTGGGAT
CGAGTATGGAGCAAATCAATGGGCGCTGCTTGCACACGCCATTCTGACCG
GTTTCACCAAATGCGGACATGTCGACTGATAACT

BO04468.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:05:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG33113-PE 705 Rtnl1-RE 1..702 720..19 3510 100 Minus
CG33113-PB 705 Rtnl1-RB 1..702 720..19 3510 100 Minus
CG33113-PA 669 Rtnl1-RA 75..666 610..19 2960 100 Minus
CG33113-PF 1788 Rtnl1-RF 1195..1785 609..19 2955 100 Minus
CG33113-PD 675 Rtnl1-RD 83..672 608..19 2950 100 Minus
CG33113-PC 609 Rtnl1-RC 17..606 608..19 2950 100 Minus
CG33113-PG 675 Rtnl1-RG 83..672 608..19 2950 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:45:10
Subject Length Description Subject Range Query Range Score Percent Strand
Rtnl1-RJ 2311 CG33113-RJ 207..908 720..19 3510 100 Minus
Rtnl1-RI 1495 CG33113-RI 224..925 720..19 3510 100 Minus
Rtnl1-RB 1539 CG33113-RB 268..969 720..19 3510 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:45:02
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 4994786..4994996 400..610 1055 100 Plus
2L 23513712 2L 4994508..4994716 192..400 1045 100 Plus
2L 23513712 2L 4994338..4994445 85..192 540 100 Plus
2L 23513712 2L 5004614..5004689 645..720 380 100 Plus
2L 23513712 2L 4994211..4994277 19..85 335 100 Plus
2L 23513712 2L 5004172..5004207 609..644 180 100 Plus
Blast to na_te.dros performed on 2015-02-11 23:45:06 has no hits.

BO04468.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:03:37 Download gff for BO04468.3prime
Subject Subject Range Query Range Percent Splice Strand
Rtnl1-PE 1..705 15..720 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:17:02 Download gff for BO04468.3prime
Subject Subject Range Query Range Percent Splice Strand
CG33113-PE 1..705 15..720 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:36:27 Download gff for BO04468.3prime
Subject Subject Range Query Range Percent Splice Strand
Rtnl1-RB 261..974 14..728 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:47:23 Download gff for BO04468.3prime
Subject Subject Range Query Range Percent Splice Strand
Rtnl1-RB 261..974 14..728 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:47:23 Download gff for BO04468.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 4994787..4994994 401..608 100 <- Plus
2L 5004172..5004207 609..644 100 <- Plus
2L 5004614..5004693 645..728 95   Plus
2L 4994339..4994444 86..191 100 <- Plus
2L 4994508..4994716 192..400 100 <- Plus
2L 4994206..4994277 14..85 97 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:36:27 Download gff for BO04468.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 4994206..4994277 14..85 97 <- Plus
arm_2L 4994339..4994444 86..191 100 <- Plus
arm_2L 4994508..4994716 192..400 100 <- Plus
arm_2L 4994787..4994994 401..608 100 <- Plus
arm_2L 5004172..5004207 609..644 100 <- Plus
arm_2L 5004614..5004693 645..728 95   Plus

BO04468.5prime Sequence

734 bp (733 high quality bases) assembled on 2005-11-29

> BO04468.5prime
GAAGTTATCAGTCGACATGTCCGCATTTGGTGAAACCGGTCAGAATGGCG
TGTGCAAGCAGCGCCCATTGATTTGCTCCATACTCGATCCCAATGCCTGG
TTTAAGCCCGAACGTTTGCACCCGCAAGTGGAATCCCTTATCTACTGGCG
CGATGTGAAGAAATCCGGCATTGTCTTCGGCGCTGGCCTGATCACACTGG
CGGCCATCTCCAGCTTCTCGGTGATCAGCGTGTTCGCCTACTTGTCGCTC
CTAACCCTCTTCGGCACCGTCGCCTTCAGAATCTACAAATCTGTGACACA
GGCCGTGCAAAAGACAAACGAGGGTCACCCCTTTAAGGATTACCTGGAGC
TGGATCTGACGCTGTCGCACGAAAAGGTACAGAACATTGCCGGCGTGGCT
GTGGCACATATCAATGGCTTCATCTCCGAGCTGAGGCGTCTGTTTCTTGT
TGAGGATATCATCGATTCGATCAAGTTCGGCGTCATTCTGTGGGTCTTCA
CCTACGTGGGTGCCTGGTTCAATGGCATGACTCTGGTCATCTTGGCCTTT
GTCTCGCTGTTTACCTTGCCCAAGGTCTACGAGAACAACAAGCAATCGAT
CGACACTCACTTGGATCTGGTGCGCAGCAAATTGACAGAAATCACCGACA
AGATCCGAGTGGCCATCCCCATTGGCAACAAGAAGCCCGAGGCCGCTGCC
GAGTCTGAGAAGGACAAGGCAAGCTTTCTAGACC

BO04468.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:05:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG33113-PE 705 Rtnl1-RE 1..702 17..718 3510 100 Plus
CG33113-PB 705 Rtnl1-RB 1..702 17..718 3510 100 Plus
CG33113-PA 669 Rtnl1-RA 75..666 127..718 2960 100 Plus
CG33113-PF 1788 Rtnl1-RF 1195..1785 128..718 2955 100 Plus
CG33113-PD 675 Rtnl1-RD 83..672 129..718 2950 100 Plus
CG33113-PC 609 Rtnl1-RC 17..606 129..718 2950 100 Plus
CG33113-PG 675 Rtnl1-RG 83..672 129..718 2950 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:06:38
Subject Length Description Subject Range Query Range Score Percent Strand
Rtnl1-RJ 2311 CG33113-RJ 207..908 17..718 3510 100 Plus
Rtnl1-RI 1495 CG33113-RI 224..925 17..718 3510 100 Plus
Rtnl1-RB 1539 CG33113-RB 268..969 17..718 3510 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 02:06:33
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 4994786..4994996 337..127 1055 100 Minus
2L 23513712 2L 4994508..4994716 545..337 1045 100 Minus
2L 23513712 2L 4994338..4994445 652..545 540 100 Minus
2L 23513712 2L 5004614..5004689 92..17 380 100 Minus
2L 23513712 2L 4994211..4994277 718..652 335 100 Minus
2L 23513712 2L 5004172..5004207 128..93 180 100 Minus
Blast to na_te.dros performed on 2015-02-13 02:06:35 has no hits.

BO04468.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:03:38 Download gff for BO04468.5prime
Subject Subject Range Query Range Percent Splice Strand
Rtnl1-PE 1..705 17..722 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:17:03 Download gff for BO04468.5prime
Subject Subject Range Query Range Percent Splice Strand
CG33113-PE 1..705 17..722 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 06:34:36 Download gff for BO04468.5prime
Subject Subject Range Query Range Percent Splice Strand
Rtnl1-RB 261..974 9..723 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:37:02 Download gff for BO04468.5prime
Subject Subject Range Query Range Percent Splice Strand
Rtnl1-RB 261..974 9..723 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:37:02 Download gff for BO04468.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 4994206..4994277 652..723 97 <- Minus
2L 4994339..4994444 546..651 100 <- Minus
2L 4994508..4994716 337..545 100 <- Minus
2L 4994787..4994994 129..336 100 <- Minus
2L 5004172..5004207 93..128 100 <- Minus
2L 5004614..5004693 9..92 95   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 06:34:36 Download gff for BO04468.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 4994206..4994277 652..723 97 <- Minus
arm_2L 4994339..4994444 546..651 100 <- Minus
arm_2L 4994508..4994716 337..545 100 <- Minus
arm_2L 4994787..4994994 129..336 100 <- Minus
arm_2L 5004172..5004207 93..128 100 <- Minus
arm_2L 5004614..5004693 9..92 95   Minus

BO04468.complete Sequence

736 bp (736 high quality bases) assembled on 2005-09-08

GenBank Submission: FJ629775

> BO04468.complete
GAAGTTATCAGTCGACATGTCCGCATTTGGTGAAACCGGTCAGAATGGCG
TGTGCAAGCAGCGCCCATTGATTTGCTCCATACTCGATCCCAATGCCTGG
TTTAAGCCCGAACGTTTGCACCCGCAAGTGGAATCCCTTATCTACTGGCG
CGATGTGAAGAAATCCGGCATTGTCTTCGGCGCTGGCCTGATCACACTGG
CGGCCATCTCCAGCTTCTCGGTGATCAGCGTGTTCGCCTACTTGTCGCTC
CTAACCCTCTTCGGCACCGTCGCCTTCAGAATCTACAAATCTGTGACACA
GGCCGTGCAAAAGACAAACGAGGGTCACCCCTTTAAGGATTACCTGGAGC
TGGATCTGACGCTGTCGCACGAAAAGGTACAGAACATTGCCGGCGTGGCT
GTGGCACATATCAATGGCTTCATCTCCGAGCTGAGGCGTCTGTTTCTTGT
TGAGGATATCATCGATTCGATCAAGTTCGGCGTCATTCTGTGGGTCTTCA
CCTACGTGGGTGCCTGGTTCAATGGCATGACTCTGGTCATCTTGGCCTTT
GTCTCGCTGTTTACCTTGCCCAAGGTCTACGAGAACAACAAGCAATCGAT
CGACACTCACTTGGATCTGGTGCGCAGCAAATTGACAGAAATCACCGACA
AGATCCGAGTGGCCATCCCCATTGGCAACAAGAAGCCCGAGGCCGCTGCC
GAGTCTGAGAAGGACAAGGCAAGCTTTCTAGACCAT

BO04468.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:36:01
Subject Length Description Subject Range Query Range Score Percent Strand
Rtnl1-RJ 705 CG33113-PJ 1..702 17..718 3510 100 Plus
Rtnl1-RI 705 CG33113-PI 1..702 17..718 3510 100 Plus
Rtnl1-RB 705 CG33113-PB 1..702 17..718 3510 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:36:02
Subject Length Description Subject Range Query Range Score Percent Strand
Rtnl1-RJ 2311 CG33113-RJ 207..908 17..718 3510 100 Plus
Rtnl1-RI 1495 CG33113-RI 224..925 17..718 3510 100 Plus
Rtnl1-RB 1539 CG33113-RB 268..969 17..718 3510 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:35:58
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 4994786..4994996 337..127 1055 100 Minus
2L 23513712 2L 4994508..4994716 545..337 1045 100 Minus
2L 23513712 2L 4994338..4994445 652..545 540 100 Minus
2L 23513712 2L 5004614..5004689 92..17 380 100 Minus
2L 23513712 2L 4994211..4994277 718..652 335 100 Minus
2L 23513712 2L 5004172..5004207 128..93 180 100 Minus
Blast to na_te.dros performed on 2014-11-28 08:36:00 has no hits.

BO04468.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:40:45 Download gff for BO04468.complete
Subject Subject Range Query Range Percent Splice Strand
Rtnl1-RB 1..705 17..722 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:59:22 Download gff for BO04468.complete
Subject Subject Range Query Range Percent Splice Strand
Rtnl1-RB 266..967 17..720 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:23:39 Download gff for BO04468.complete
Subject Subject Range Query Range Percent Splice Strand
Rtnl1-RB 268..969 17..720 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:40:46 Download gff for BO04468.complete
Subject Subject Range Query Range Percent Splice Strand
Rtnl1-RB 259..972 9..723 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:21:18 Download gff for BO04468.complete
Subject Subject Range Query Range Percent Splice Strand
Rtnl1-RB 268..969 17..720 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:21:18 Download gff for BO04468.complete
Subject Subject Range Query Range Percent Splice Strand
2L 4994209..4994277 652..720 97 <- Minus
2L 4994339..4994444 546..651 100 <- Minus
2L 4994508..4994716 337..545 100 <- Minus
2L 4994787..4994994 129..336 100 <- Minus
2L 5004172..5004207 93..128 100 <- Minus
2L 5004614..5004689 17..92 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:23:39 Download gff for BO04468.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 4994209..4994277 652..720 97 <- Minus
arm_2L 4994339..4994444 546..651 100 <- Minus
arm_2L 4994508..4994716 337..545 100 <- Minus
arm_2L 4994787..4994994 129..336 100 <- Minus
arm_2L 5004172..5004207 93..128 100 <- Minus
arm_2L 5004614..5004689 17..92 100   Minus

BO04468.pep Sequence

Translation from 16 to 736

> BO04468.pep
MSAFGETGQNGVCKQRPLICSILDPNAWFKPERLHPQVESLIYWRDVKKS
GIVFGAGLITLAAISSFSVISVFAYLSLLTLFGTVAFRIYKSVTQAVQKT
NEGHPFKDYLELDLTLSHEKVQNIAGVAVAHINGFISELRRLFLVEDIID
SIKFGVILWVFTYVGAWFNGMTLVILAFVSLFTLPKVYENNKQSIDTHLD
LVRSKLTEITDKIRVAIPIGNKKPEAAAESEKDKASFLDH

BO04468.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:34:55
Subject Length Description Subject Range Query Range Score Percent Strand
Rtnl1-PJ 234 CG33113-PJ 1..234 1..234 1192 100 Plus
Rtnl1-PI 234 CG33113-PI 1..234 1..234 1192 100 Plus
Rtnl1-PB 234 CG33113-PB 1..234 1..234 1192 100 Plus
Rtnl1-PE 234 CG33113-PE 1..234 1..234 1192 100 Plus
Rtnl1-PL 222 CG33113-PL 1..222 1..234 1093 94.4 Plus