Clone Sequence Records
BO04473.3prime Sequence
853 bp (780 high quality bases) assembled on 2005-12-01
> BO04473.3prime
ATGGTCTAGAAAGCTTGCTTTCCGGCTGCCAAAGAGTTTGCCGCGCGCAT
GCGATGTGGCTGGGGACAGAGCGTGCGAACTGGCGTGCCGTTTGATGCGC
GGAGTATCCCTTAGCTCTGAACCAGATGCGGAGGAGGCACTTGTGCAGGC
ATTTGAATTGGCCGTCACATTGGTCAGGGTGGACACTCCGCTGCACGAAT
CCCCTGTGGTTGGCATTGATTTGTAGCGCTGCAGCGAGGTGCGCGGCTTC
TTCGGCATTGTGGCCTGCTGCACTGCCTCTTCTAGGGCGTTTAGCCAGTC
CTCGCCCTCGCTTTCGTCTTCCAGAAATTTCATGTAGAAGGAGGGTCGCT
TTGCCGTGTGGTGCCTAGTGGGTGTGGTGCTTGTGCTTGATTTGGGAGGT
TCATGGTGTTCTATTTTCGACTCCAGTTGCTGGGAGGCCTCAAGCAGGAA
GAGATCCGTCTCCGAGTCGTTGAGGAAGTCTGCCATTGGATCGGAGGCAG
CTACAGGGGAAAGCACTGGCTCTGGCGTAGCCTTCGTGCAGGTTAATCTT
GTGCGGGGAGCAACAGGTGACGGAGCTTTAGGAGTTTTTAGTGGCATTAC
TGGTTCGGACACAGCTATTTGCTCCAACTGGCTATTGAGCCTAGCACAGC
GCTCCTTAAGAAGAACATTAGCCCGCATCTGCTGTGCCCGCCACTGCTCA
TTGTCCAGTTGGCTGCGTCTATCCTCGACGCCCTTAAAGGCTATCTGCCG
GCGTCGTTCGCGCTGGCTCAAACTGCCTATTTCCGCGGAGTCAAAGCCAC
TGTCCGTGGTGGCATTGCTGCTTCGGTTCCAGCGCCAGCCCCCCTCCGGA
CTT
BO04473.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:05:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6425-PA | 1122 | CG6425-RA | 285..1119 | 853..19 | 4125 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:07:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6425-RA | 2101 | CG6425-RA | 410..1244 | 853..19 | 4145 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:07:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 26716116..26716921 | 48..853 | 4000 | 99.8 | Plus |
Blast to na_te.dros performed on 2015-02-12 10:07:15 has no hits.
BO04473.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:03:45 Download gff for
BO04473.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6425-PA | 285..1122 | 16..853 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:17:14 Download gff for
BO04473.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6425-PA | 285..1122 | 16..853 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:52:57 Download gff for
BO04473.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6425-RA | 410..1248 | 15..853 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:05:13 Download gff for
BO04473.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6425-RA | 410..1248 | 15..853 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:05:13 Download gff for
BO04473.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 26716017..26716050 | 15..47 | 94 | <- | Plus |
3R | 26716116..26716921 | 48..853 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:52:57 Download gff for
BO04473.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 22541739..22541772 | 15..47 | 94 | <- | Plus |
arm_3R | 22541838..22542643 | 48..853 | 99 | | Plus |
BO04473.5prime Sequence
850 bp (775 high quality bases) assembled on 2005-11-29
> BO04473.5prime
GAAGTTATCAGTCGACATGGAGAACGCACTTAAACGGCGATCTTTAACGC
TCAGCACGCGTCTGCTGCATAAGCGCCACAGTGCTTCACCACAGAGCGTA
CGCACAGGGCACAATGTAAGTGTATCCGTGGACACTCCCGGCTCGCCCAA
CTCCTCAGCAGTAGTGGGAATCACGTCCGACCTGGAGAGCACTCCACCAC
ACAAACACAAGCCCAGCTTGGACGACAGTGTGGACTTCTCGCCCCGTTTG
GACATCAGCCTTTCGCCCAGCTGCCTCTTCTCCCAGACACTGGCCACCGA
AAGTCCGGAGGTGGGCTGGCGCTGGAACCGAAGCAGCAATGCCACCACGG
ACAGTGGCTTCGACTCCGCGGAAATAGGCAGTTTGAGCCAGCGCGAACGA
CGCCGGCAGATAGCCTTTAAGGGCGTCGAGGATAGACGCAGCCAACTGGA
CAATGAGCAGTGGCGGGCACAGCAGATGCGGGCTAATGTTCTTCTTAAGG
AGCGCTGTGCTAGGCTCAATAGCCAGTTGGAGCAAATAGCTGTGTCCGAA
CCAGTAATGCCACTAAAAACTCCTAAAGCTCCGTCACCTGTTGCTCCCCG
CACAAGATTAACCTGCACGAAGGCTACGCCAGAGCCAGTGCTTTCCCCTG
TAGCTGCCTCCGATCCAATGGCAGACTTCCTCAACGACTCGGAGACGGAT
CTCTTCCTGCTTGAGGCCTCCCAGCAACTGGAGTCGAAAATAGAACACCA
TGAACCTCCCAAATCAAGCACAAGCACCACACCCACTAGGCACCACACGG
CAAAGCGACCCTCCTTCTACATGAAATTTCTGGAAGACGAAAGCGAGGGC
BO04473.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:05:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6425-PA | 1122 | CG6425-RA | 1..834 | 17..850 | 4170 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 02:27:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6425-RA | 2101 | CG6425-RA | 126..959 | 17..850 | 4170 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 02:27:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 26716372..26717139 | 850..83 | 3840 | 100 | Minus |
3R | 32079331 | 3R | 26717198..26717264 | 83..17 | 335 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 02:27:27 has no hits.
BO04473.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:03:47 Download gff for
BO04473.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6425-PA | 1..834 | 17..850 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:17:16 Download gff for
BO04473.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6425-PA | 1..834 | 17..850 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 20:47:46 Download gff for
BO04473.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6425-RA | 122..959 | 10..850 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:21:34 Download gff for
BO04473.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6425-RA | 122..959 | 10..850 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:21:34 Download gff for
BO04473.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 26716372..26717138 | 84..850 | 100 | <- | Minus |
3R | 26717198..26717268 | 10..83 | 94 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 20:47:46 Download gff for
BO04473.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 22542094..22542860 | 84..850 | 100 | <- | Minus |
arm_3R | 22542920..22542990 | 10..83 | 94 | | Minus |
BO04473.complete Sequence
1153 bp (1153 high quality bases) assembled on 2005-09-08
GenBank Submission: FJ629776
> BO04473.complete
GAAGTTATCAGTCGACATGGAGAACGCACTTAAACGGCGATCTTTAACGC
TCAGCACGCGTCTGCTGCATAAGCGCCACAGTGCTTCACCACAGAGCGTA
CGCACAGGGCACAATGTAAGTGTATCCGTGGACACTCCCGGCTCGCCCAA
CTCCTCAGCAGTAGTGGGAATCACGTCCGACCTGGAGAGCACTCCACCAC
ACAAACACAAGCCCAGCTTGGACGACAGTGTGGACTTCTCGCCCCGTTTG
GACATCAGCCTTTCGCCCAGCTGCCTCTTCTCCCAGACACTGGCCACCGA
AAGTCCGGAGGTGGGCTGGCGCTGGAACCGAAGCAGCAATGCCACCACGG
ACAGTGGCTTCGACTCCGCGGAAATAGGCAGTTTGAGCCAGCGCGAACGA
CGCCGGCAGATAGCCTTTAAGGGCGTCGAGGATAGACGCAGCCAACTGGA
CAATGAGCAGTGGCGGGCACAGCAGATGCGGGCTAATGTTCTTCTTAAGG
AGCGCTGTGCTAGGCTCAATAGCCAGTTGGAGCAAATAGCTGTGTCCGAA
CCAGTAATGCCACTAAAAACTCCTAAAGCTCCGTCACCTGTTGCTCCCCG
CACAAGATTAACCTGCACGAAGGCTACGCCAGAGCCAGTGCTTTCCCCTG
TAGCTGCCTCCGATCCAATGGCAGACTTCCTCAACGACTCGGAGACGGAT
CTCTTCCTGCTTGAGGCCTCCCAGCAACTGGAGTCGAAAATAGAACACCA
TGAACCTCCCAAATCAAGCACAAGCACCACACCCACTAGGCACCACACGG
CAAAGCGACCCTCCTTCTACATGAAATTTCTGGAAGACGAAAGCGAGGGC
GAGGACTGGCTAAACGCCCTAGAAGAGGCAGTGCAGCAGGCCACAATGCC
GAAGAAGCCGCGCACCTCGCTGCAGCGCTACAAATCAATGCCAACCACAG
GGGATTCGTGCAGCGGAGTGTCCACCCTGACCAATGTGACGGCCAATTCA
AATGCCTGCACAAGTGCCTCCTCCGCATCTGGTTCAGAGCTAAGGGATAC
TCCGCGCATCAAACGGCACGCCAGTTCGCACGCTCTGTCCCCAGCCACAT
CGCATGCGCGCGGCAAACTCTTTGGCAGCCGGAAAGCAAGCTTTCTAGAC
CAT
BO04473.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:11:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6425-RA | 1122 | CG6425-PA | 1..1119 | 17..1135 | 5595 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:11:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6425-RA | 2101 | CG6425-RA | 126..1244 | 17..1135 | 5595 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:11:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 26716116..26717139 | 1106..83 | 5120 | 100 | Minus |
3R | 32079331 | 3R | 26717198..26717264 | 83..17 | 335 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 15:11:30 has no hits.
BO04473.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:40:47 Download gff for
BO04473.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6425-RA | 1..1122 | 17..1138 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:10:17 Download gff for
BO04473.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6425-RA | 118..1244 | 10..1139 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:49:24 Download gff for
BO04473.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6425-RA | 126..1244 | 17..1137 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:40:47 Download gff for
BO04473.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6425-RA | 118..1244 | 10..1139 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:08:12 Download gff for
BO04473.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6425-RA | 126..1244 | 17..1137 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:08:12 Download gff for
BO04473.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 26716019..26716050 | 1107..1137 | 93 | <- | Minus |
3R | 26716116..26717138 | 84..1106 | 100 | <- | Minus |
3R | 26717198..26717264 | 17..83 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:49:24 Download gff for
BO04473.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 22541741..22541772 | 1107..1137 | 93 | <- | Minus |
arm_3R | 22541838..22542860 | 84..1106 | 100 | <- | Minus |
arm_3R | 22542920..22542986 | 17..83 | 100 | | Minus |
BO04473.pep Sequence
Translation from 16 to 1153
> BO04473.pep
MENALKRRSLTLSTRLLHKRHSASPQSVRTGHNVSVSVDTPGSPNSSAVV
GITSDLESTPPHKHKPSLDDSVDFSPRLDISLSPSCLFSQTLATESPEVG
WRWNRSSNATTDSGFDSAEIGSLSQRERRRQIAFKGVEDRRSQLDNEQWR
AQQMRANVLLKERCARLNSQLEQIAVSEPVMPLKTPKAPSPVAPRTRLTC
TKATPEPVLSPVAASDPMADFLNDSETDLFLLEASQQLESKIEHHEPPKS
STSTTPTRHHTAKRPSFYMKFLEDESEGEDWLNALEEAVQQATMPKKPRT
SLQRYKSMPTTGDSCSGVSTLTNVTANSNACTSASSASGSELRDTPRIKR
HASSHALSPATSHARGKLFGSRKASFLDH
BO04473.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:31:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6425-PA | 373 | CG6425-PA | 1..373 | 1..373 | 1914 | 100 | Plus |