Clone BO04473 Report

Search the DGRC for BO04473

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:44
Well:73
Vector:pDNR-Dual
Associated Gene/TranscriptCG6425-RA
Protein status:BO04473.pep: validated full length
Sequenced Size:1153

Clone Sequence Records

BO04473.3prime Sequence

853 bp (780 high quality bases) assembled on 2005-12-01

> BO04473.3prime
ATGGTCTAGAAAGCTTGCTTTCCGGCTGCCAAAGAGTTTGCCGCGCGCAT
GCGATGTGGCTGGGGACAGAGCGTGCGAACTGGCGTGCCGTTTGATGCGC
GGAGTATCCCTTAGCTCTGAACCAGATGCGGAGGAGGCACTTGTGCAGGC
ATTTGAATTGGCCGTCACATTGGTCAGGGTGGACACTCCGCTGCACGAAT
CCCCTGTGGTTGGCATTGATTTGTAGCGCTGCAGCGAGGTGCGCGGCTTC
TTCGGCATTGTGGCCTGCTGCACTGCCTCTTCTAGGGCGTTTAGCCAGTC
CTCGCCCTCGCTTTCGTCTTCCAGAAATTTCATGTAGAAGGAGGGTCGCT
TTGCCGTGTGGTGCCTAGTGGGTGTGGTGCTTGTGCTTGATTTGGGAGGT
TCATGGTGTTCTATTTTCGACTCCAGTTGCTGGGAGGCCTCAAGCAGGAA
GAGATCCGTCTCCGAGTCGTTGAGGAAGTCTGCCATTGGATCGGAGGCAG
CTACAGGGGAAAGCACTGGCTCTGGCGTAGCCTTCGTGCAGGTTAATCTT
GTGCGGGGAGCAACAGGTGACGGAGCTTTAGGAGTTTTTAGTGGCATTAC
TGGTTCGGACACAGCTATTTGCTCCAACTGGCTATTGAGCCTAGCACAGC
GCTCCTTAAGAAGAACATTAGCCCGCATCTGCTGTGCCCGCCACTGCTCA
TTGTCCAGTTGGCTGCGTCTATCCTCGACGCCCTTAAAGGCTATCTGCCG
GCGTCGTTCGCGCTGGCTCAAACTGCCTATTTCCGCGGAGTCAAAGCCAC
TGTCCGTGGTGGCATTGCTGCTTCGGTTCCAGCGCCAGCCCCCCTCCGGA
CTT

BO04473.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:05:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG6425-PA 1122 CG6425-RA 285..1119 853..19 4125 99.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:07:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG6425-RA 2101 CG6425-RA 410..1244 853..19 4145 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:07:14
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 26716116..26716921 48..853 4000 99.8 Plus
Blast to na_te.dros performed on 2015-02-12 10:07:15 has no hits.

BO04473.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:03:45 Download gff for BO04473.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6425-PA 285..1122 16..853 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:17:14 Download gff for BO04473.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6425-PA 285..1122 16..853 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:52:57 Download gff for BO04473.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6425-RA 410..1248 15..853 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:05:13 Download gff for BO04473.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6425-RA 410..1248 15..853 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:05:13 Download gff for BO04473.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 26716017..26716050 15..47 94 <- Plus
3R 26716116..26716921 48..853 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:52:57 Download gff for BO04473.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 22541739..22541772 15..47 94 <- Plus
arm_3R 22541838..22542643 48..853 99   Plus

BO04473.5prime Sequence

850 bp (775 high quality bases) assembled on 2005-11-29

> BO04473.5prime
GAAGTTATCAGTCGACATGGAGAACGCACTTAAACGGCGATCTTTAACGC
TCAGCACGCGTCTGCTGCATAAGCGCCACAGTGCTTCACCACAGAGCGTA
CGCACAGGGCACAATGTAAGTGTATCCGTGGACACTCCCGGCTCGCCCAA
CTCCTCAGCAGTAGTGGGAATCACGTCCGACCTGGAGAGCACTCCACCAC
ACAAACACAAGCCCAGCTTGGACGACAGTGTGGACTTCTCGCCCCGTTTG
GACATCAGCCTTTCGCCCAGCTGCCTCTTCTCCCAGACACTGGCCACCGA
AAGTCCGGAGGTGGGCTGGCGCTGGAACCGAAGCAGCAATGCCACCACGG
ACAGTGGCTTCGACTCCGCGGAAATAGGCAGTTTGAGCCAGCGCGAACGA
CGCCGGCAGATAGCCTTTAAGGGCGTCGAGGATAGACGCAGCCAACTGGA
CAATGAGCAGTGGCGGGCACAGCAGATGCGGGCTAATGTTCTTCTTAAGG
AGCGCTGTGCTAGGCTCAATAGCCAGTTGGAGCAAATAGCTGTGTCCGAA
CCAGTAATGCCACTAAAAACTCCTAAAGCTCCGTCACCTGTTGCTCCCCG
CACAAGATTAACCTGCACGAAGGCTACGCCAGAGCCAGTGCTTTCCCCTG
TAGCTGCCTCCGATCCAATGGCAGACTTCCTCAACGACTCGGAGACGGAT
CTCTTCCTGCTTGAGGCCTCCCAGCAACTGGAGTCGAAAATAGAACACCA
TGAACCTCCCAAATCAAGCACAAGCACCACACCCACTAGGCACCACACGG
CAAAGCGACCCTCCTTCTACATGAAATTTCTGGAAGACGAAAGCGAGGGC

BO04473.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:05:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG6425-PA 1122 CG6425-RA 1..834 17..850 4170 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 02:27:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG6425-RA 2101 CG6425-RA 126..959 17..850 4170 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 02:27:26
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 26716372..26717139 850..83 3840 100 Minus
3R 32079331 3R 26717198..26717264 83..17 335 100 Minus
Blast to na_te.dros performed on 2015-02-11 02:27:27 has no hits.

BO04473.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:03:47 Download gff for BO04473.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6425-PA 1..834 17..850 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:17:16 Download gff for BO04473.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6425-PA 1..834 17..850 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 20:47:46 Download gff for BO04473.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6425-RA 122..959 10..850 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:21:34 Download gff for BO04473.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6425-RA 122..959 10..850 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:21:34 Download gff for BO04473.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 26716372..26717138 84..850 100 <- Minus
3R 26717198..26717268 10..83 94   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 20:47:46 Download gff for BO04473.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 22542094..22542860 84..850 100 <- Minus
arm_3R 22542920..22542990 10..83 94   Minus

BO04473.complete Sequence

1153 bp (1153 high quality bases) assembled on 2005-09-08

GenBank Submission: FJ629776

> BO04473.complete
GAAGTTATCAGTCGACATGGAGAACGCACTTAAACGGCGATCTTTAACGC
TCAGCACGCGTCTGCTGCATAAGCGCCACAGTGCTTCACCACAGAGCGTA
CGCACAGGGCACAATGTAAGTGTATCCGTGGACACTCCCGGCTCGCCCAA
CTCCTCAGCAGTAGTGGGAATCACGTCCGACCTGGAGAGCACTCCACCAC
ACAAACACAAGCCCAGCTTGGACGACAGTGTGGACTTCTCGCCCCGTTTG
GACATCAGCCTTTCGCCCAGCTGCCTCTTCTCCCAGACACTGGCCACCGA
AAGTCCGGAGGTGGGCTGGCGCTGGAACCGAAGCAGCAATGCCACCACGG
ACAGTGGCTTCGACTCCGCGGAAATAGGCAGTTTGAGCCAGCGCGAACGA
CGCCGGCAGATAGCCTTTAAGGGCGTCGAGGATAGACGCAGCCAACTGGA
CAATGAGCAGTGGCGGGCACAGCAGATGCGGGCTAATGTTCTTCTTAAGG
AGCGCTGTGCTAGGCTCAATAGCCAGTTGGAGCAAATAGCTGTGTCCGAA
CCAGTAATGCCACTAAAAACTCCTAAAGCTCCGTCACCTGTTGCTCCCCG
CACAAGATTAACCTGCACGAAGGCTACGCCAGAGCCAGTGCTTTCCCCTG
TAGCTGCCTCCGATCCAATGGCAGACTTCCTCAACGACTCGGAGACGGAT
CTCTTCCTGCTTGAGGCCTCCCAGCAACTGGAGTCGAAAATAGAACACCA
TGAACCTCCCAAATCAAGCACAAGCACCACACCCACTAGGCACCACACGG
CAAAGCGACCCTCCTTCTACATGAAATTTCTGGAAGACGAAAGCGAGGGC
GAGGACTGGCTAAACGCCCTAGAAGAGGCAGTGCAGCAGGCCACAATGCC
GAAGAAGCCGCGCACCTCGCTGCAGCGCTACAAATCAATGCCAACCACAG
GGGATTCGTGCAGCGGAGTGTCCACCCTGACCAATGTGACGGCCAATTCA
AATGCCTGCACAAGTGCCTCCTCCGCATCTGGTTCAGAGCTAAGGGATAC
TCCGCGCATCAAACGGCACGCCAGTTCGCACGCTCTGTCCCCAGCCACAT
CGCATGCGCGCGGCAAACTCTTTGGCAGCCGGAAAGCAAGCTTTCTAGAC
CAT

BO04473.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:11:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG6425-RA 1122 CG6425-PA 1..1119 17..1135 5595 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:11:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG6425-RA 2101 CG6425-RA 126..1244 17..1135 5595 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:11:29
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 26716116..26717139 1106..83 5120 100 Minus
3R 32079331 3R 26717198..26717264 83..17 335 100 Minus
Blast to na_te.dros performed on 2014-11-26 15:11:30 has no hits.

BO04473.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:40:47 Download gff for BO04473.complete
Subject Subject Range Query Range Percent Splice Strand
CG6425-RA 1..1122 17..1138 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:10:17 Download gff for BO04473.complete
Subject Subject Range Query Range Percent Splice Strand
CG6425-RA 118..1244 10..1139 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:49:24 Download gff for BO04473.complete
Subject Subject Range Query Range Percent Splice Strand
CG6425-RA 126..1244 17..1137 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:40:47 Download gff for BO04473.complete
Subject Subject Range Query Range Percent Splice Strand
CG6425-RA 118..1244 10..1139 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:08:12 Download gff for BO04473.complete
Subject Subject Range Query Range Percent Splice Strand
CG6425-RA 126..1244 17..1137 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:08:12 Download gff for BO04473.complete
Subject Subject Range Query Range Percent Splice Strand
3R 26716019..26716050 1107..1137 93 <- Minus
3R 26716116..26717138 84..1106 100 <- Minus
3R 26717198..26717264 17..83 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:49:24 Download gff for BO04473.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 22541741..22541772 1107..1137 93 <- Minus
arm_3R 22541838..22542860 84..1106 100 <- Minus
arm_3R 22542920..22542986 17..83 100   Minus

BO04473.pep Sequence

Translation from 16 to 1153

> BO04473.pep
MENALKRRSLTLSTRLLHKRHSASPQSVRTGHNVSVSVDTPGSPNSSAVV
GITSDLESTPPHKHKPSLDDSVDFSPRLDISLSPSCLFSQTLATESPEVG
WRWNRSSNATTDSGFDSAEIGSLSQRERRRQIAFKGVEDRRSQLDNEQWR
AQQMRANVLLKERCARLNSQLEQIAVSEPVMPLKTPKAPSPVAPRTRLTC
TKATPEPVLSPVAASDPMADFLNDSETDLFLLEASQQLESKIEHHEPPKS
STSTTPTRHHTAKRPSFYMKFLEDESEGEDWLNALEEAVQQATMPKKPRT
SLQRYKSMPTTGDSCSGVSTLTNVTANSNACTSASSASGSELRDTPRIKR
HASSHALSPATSHARGKLFGSRKASFLDH

BO04473.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:31:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG6425-PA 373 CG6425-PA 1..373 1..373 1914 100 Plus