Clone Sequence Records
BO04474.3prime Sequence
866 bp (829 high quality bases) assembled on 2005-12-01
> BO04474.3prime
ATGGTCTAGAAAGCTTGCTTCCAGCTTCATGGGCTTCACGCTGTTGTTGT
TCAGATCGATGTACGCCTTTCCGACCTGGCCATTCTGGAGCAGATGCTTA
CCGGCGTTCATGGTCTGCGGCATGCAACCCATACCGCCGGCGGCACGCAG
AGCGGATTGAGCCAAACTACTGCCGGTGGTGCGACTGCCTCCATCCACGG
ACTTGGCCTTCTTGTAGGTCTTGCGATAGAAATTGCCGAACAGGTAAAGG
AAGATGACCGTGTTGCCCACGAAGAAGAAGGTCAGTGTCTTGGGCATGTT
GCAGCCCTTGGCGCCCACGGTCAGCATGTAGCCCAGGATGAGGACGAACT
GGATCAGCTGGATGCTGGTCATGTACTTCTTCCACCACAGGTACTTCTGG
TACTGGGGTCCCATTGCGGCCACCATGTAGTAGAAGTACATGATAATGTG
CACGCCCGAGTTGAGAATGCCAATGATCACGCCCTGCTCGCCGGGAGCGT
ACTTCAGGTAGCCCCAGGAGAAGAGCACCGTGATGGTGTGATGGTACACG
TGTAGGAAGGACACCTGGTTGTCCTTCTTGCGCAGCACAAAGAACGTCGT
GTCCAGCAGATCGATGATCTTCGAGAAAAAGTAGAACCAGGCACCGGAAT
AGAGGGTCAGATTCTGCTCCCTGGTGCGGTTAATCTCGCACTTCTTCGAG
AAGATCGACGCCATCACATTGCTCTCTTGGATGGACGTGCGGCACATCCA
AATGGAGTACAAGACCTGAAAGGCATTATAGAACACCATGATGCGCTTGA
GGTCCATGGGCTTGCGATTCTTCATGTACTCGGGTCCGATTTTCAGAACA
AACGCCAGATAGACGA
BO04474.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:05:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6921-PB | 969 | CG6921-RB | 119..966 | 866..19 | 4240 | 100 | Minus |
CG6921-PA | 969 | CG6921-RA | 119..966 | 866..19 | 4240 | 100 | Minus |
CG6921-PC | 969 | CG6921-RC | 119..966 | 866..19 | 4240 | 100 | Minus |
CG33110-PA | 1014 | CG33110-RA | 645..687 | 442..400 | 140 | 93 | Minus |
CG2781-PA | 990 | CG2781-RA | 586..612 | 399..373 | 135 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:22:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
bond-RC | 1503 | CG6921-RC | 282..1129 | 866..19 | 4240 | 100 | Minus |
bond-RA | 1627 | CG6921-RA | 406..1253 | 866..19 | 4240 | 100 | Minus |
bond-RB | 1605 | CG6921-RB | 384..1231 | 866..19 | 4240 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:22:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 22555403..22556120 | 736..19 | 3590 | 100 | Minus |
3R | 32079331 | 3R | 22554883..22555013 | 866..736 | 655 | 100 | Minus |
3R | 32079331 | 3R | 22559621..22559876 | 366..621 | 365 | 76.2 | Plus |
3R | 32079331 | 3R | 7982833..7982946 | 341..454 | 315 | 85.1 | Plus |
3R | 32079331 | 3R | 4467636..4467744 | 359..467 | 290 | 84.4 | Plus |
3R | 32079331 | 3R | 22574801..22574887 | 453..367 | 255 | 86.2 | Minus |
3R | 32079331 | 3R | 4444123..4444211 | 366..454 | 220 | 83.1 | Plus |
3R | 32079331 | 3R | 9813350..9813433 | 621..538 | 195 | 82.1 | Minus |
3R | 32079331 | 3R | 22532980..22533064 | 366..450 | 185 | 81.2 | Plus |
Blast to na_te.dros performed on 2015-02-12 06:22:10 has no hits.
BO04474.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:03:48 Download gff for
BO04474.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6921-PB | 120..969 | 16..865 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:17:17 Download gff for
BO04474.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6921-PC | 120..969 | 16..865 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:26:29 Download gff for
BO04474.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
bond-RB | 385..1231 | 19..865 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:08:44 Download gff for
BO04474.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
bond-RB | 385..1231 | 19..865 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:08:44 Download gff for
BO04474.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 22554884..22555013 | 736..865 | 100 | -> | Minus |
3R | 22555404..22556120 | 19..735 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:26:29 Download gff for
BO04474.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 18380606..18380735 | 736..865 | 100 | -> | Minus |
arm_3R | 18381126..18381842 | 19..735 | 100 | | Minus |
BO04474.5prime Sequence
833 bp (776 high quality bases) assembled on 2005-11-29
> BO04474.5prime
GAAGTTATCAGTCGACATGACGAACTACATAAAGATTGTCGAGGAGCGAA
TCTCCGGCCTCTCAAAAGGAGTGGATGAGACGGTGGACAGCTGGTTCCTA
ATGAGCTCACCTATGCCCGTGGTGGCCGTGGTTCTCGTCTATCTGGCGTT
TGTTCTGAAAATCGGACCCGAGTACATGAAGAATCGCAAGCCCATGGACC
TCAAGCGCATCATGGTGTTCTATAATGCCTTTCAGGTCTTGTACTCCATT
TGGATGTGCCGCACGTCCATCCAAGAGAGCAATGTGATGGCGTCGATCTT
CTCGAAGAAGTGCGAGATTAACCGCACCAGGGAGCAGAATCTGACCCTCT
ATTCCGGTGCCTGGTTCTACTTTTTCTCGAAGATCATCGATCTGCTGGAC
ACGACGTTCTTTGTGCTGCGCAAGAAGGACAACCAGGTGTCCTTCCTACA
CGTGTACCATCACACCATCACGGTGCTCTTCTCCTGGGGCTACCTGAAGT
ACGCTCCCGGCGAGCAGGGCGTGATCATTGGCATTCTCAACTCGGGCGTG
CACATTATCATGTACTTCTACTACATGGTGGCCGCAATGGGACCCCAGTA
CCAGAAGTACCTGTGGTGGAAGAAGTACATGACCAGCATCCAGCTGATCC
AGTTCGTCCTCATCCTGGGCTACATGCTGACCGTGGGCGCCAAGGGCTGC
AACATGCCCAAGACACTGACCTTCTTCTTCGTGGGCAACACGGTCATCTT
CCTTTACCTGTTCGGCAATTTCTATCGCAAGACCTACAAGAAGGCCAAGT
CCGTGGATGGAGGCAGTCGCACCACCGGCAGTA
BO04474.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:05:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6921-PB | 969 | CG6921-RB | 1..817 | 17..833 | 4085 | 100 | Plus |
CG6921-PA | 969 | CG6921-RA | 1..817 | 17..833 | 4085 | 100 | Plus |
CG6921-PC | 969 | CG6921-RC | 1..817 | 17..833 | 4085 | 100 | Plus |
CG33110-PA | 1014 | CG33110-RA | 645..687 | 559..601 | 140 | 93 | Plus |
CG2781-PA | 990 | CG2781-RA | 586..612 | 602..628 | 135 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:06:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
bond-RC | 1503 | CG6921-RC | 164..980 | 17..833 | 4085 | 100 | Plus |
bond-RA | 1627 | CG6921-RA | 288..1104 | 17..833 | 4085 | 100 | Plus |
bond-RB | 1605 | CG6921-RB | 266..1082 | 17..833 | 4085 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 02:06:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 22555403..22555971 | 265..833 | 2845 | 100 | Plus |
3R | 32079331 | 3R | 22554822..22555013 | 74..265 | 960 | 100 | Plus |
3R | 32079331 | 3R | 22559621..22559876 | 635..380 | 365 | 76.2 | Minus |
3R | 32079331 | 3R | 7982833..7982946 | 660..547 | 315 | 85.1 | Minus |
3R | 32079331 | 3R | 4467636..4467744 | 642..534 | 290 | 84.4 | Minus |
3R | 32079331 | 3R | 22554700..22554757 | 17..74 | 290 | 100 | Plus |
3R | 32079331 | 3R | 22574801..22574887 | 548..634 | 255 | 86.2 | Plus |
3R | 32079331 | 3R | 4444123..4444211 | 635..547 | 220 | 83.1 | Minus |
3R | 32079331 | 3R | 9813350..9813433 | 380..463 | 195 | 82.1 | Plus |
3R | 32079331 | 3R | 22532980..22533064 | 635..551 | 185 | 81.2 | Minus |
Blast to na_te.dros performed on 2015-02-13 02:06:53 has no hits.
BO04474.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:03:49 Download gff for
BO04474.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6921-PB | 1..816 | 17..832 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:17:18 Download gff for
BO04474.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6921-PC | 1..816 | 17..832 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 06:34:37 Download gff for
BO04474.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
bond-RB | 259..1081 | 10..832 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:38:26 Download gff for
BO04474.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
bond-RB | 259..1081 | 10..832 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:38:26 Download gff for
BO04474.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 22554693..22554757 | 10..74 | 95 | -> | Plus |
3R | 22554823..22555013 | 75..265 | 100 | -> | Plus |
3R | 22555404..22555970 | 266..832 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 06:34:37 Download gff for
BO04474.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 18380415..18380479 | 10..74 | 95 | -> | Plus |
arm_3R | 18380545..18380735 | 75..265 | 100 | -> | Plus |
arm_3R | 18381126..18381692 | 266..832 | 100 | | Plus |
BO04474.complete Sequence
1000 bp (1000 high quality bases) assembled on 2005-09-08
GenBank Submission: FJ629777
> BO04474.complete
GAAGTTATCAGTCGACATGACGAACTACATAAAGATTGTCGAGGAGCGAA
TCTCCGGCCTCTCAAAAGGAGTGGATGAGACGGTGGACAGCTGGTTCCTA
ATGAGCTCACCTATGCCCGTGGTGGCCGTGGTTCTCGTCTATCTGGCGTT
TGTTCTGAAAATCGGACCCGAGTACATGAAGAATCGCAAGCCCATGGACC
TCAAGCGCATCATGGTGTTCTATAATGCCTTTCAGGTCTTGTACTCCATT
TGGATGTGCCGCACGTCCATCCAAGAGAGCAATGTGATGGCGTCGATCTT
CTCGAAGAAGTGCGAGATTAACCGCACCAGGGAGCAGAATCTGACCCTCT
ATTCCGGTGCCTGGTTCTACTTTTTCTCGAAGATCATCGATCTGCTGGAC
ACGACGTTCTTTGTGCTGCGCAAGAAGGACAACCAGGTGTCCTTCCTACA
CGTGTACCATCACACCATCACGGTGCTCTTCTCCTGGGGCTACCTGAAGT
ACGCTCCCGGCGAGCAGGGCGTGATCATTGGCATTCTCAACTCGGGCGTG
CACATTATCATGTACTTCTACTACATGGTGGCCGCAATGGGACCCCAGTA
CCAGAAGTACCTGTGGTGGAAGAAGTACATGACCAGCATCCAGCTGATCC
AGTTCGTCCTCATCCTGGGCTACATGCTGACCGTGGGCGCCAAGGGCTGC
AACATGCCCAAGACACTGACCTTCTTCTTCGTGGGCAACACGGTCATCTT
CCTTTACCTGTTCGGCAATTTCTATCGCAAGACCTACAAGAAGGCCAAGT
CCGTGGATGGAGGCAGTCGCACCACCGGCAGTAGTTTGGCTCAATCCGCT
CTGCGTGCCGCCGGCGGTATGGGTTGCATGCCGCAGACCATGAACGCCGG
TAAGCATCTGCTCCAGAATGGCCAGGTCGGAAAGGCGTACATCGATCTGA
ACAACAACAGCGTGAAGCCCATGAAGCTGGAAGCAAGCTTTCTAGACCAT
BO04474.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:01:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
bond-RC | 969 | CG6921-PC | 1..966 | 17..982 | 4830 | 100 | Plus |
bond-RA | 969 | CG6921-PA | 1..966 | 17..982 | 4830 | 100 | Plus |
bond-RB | 969 | CG6921-PB | 1..966 | 17..982 | 4830 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:01:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
bond-RC | 1503 | CG6921-RC | 164..1129 | 17..982 | 4830 | 100 | Plus |
bond-RA | 1627 | CG6921-RA | 288..1253 | 17..982 | 4830 | 100 | Plus |
bond-RB | 1605 | CG6921-RB | 266..1231 | 17..982 | 4830 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:01:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 22555403..22556120 | 265..982 | 3590 | 100 | Plus |
3R | 32079331 | 3R | 22554822..22555013 | 74..265 | 960 | 100 | Plus |
3R | 32079331 | 3R | 22559621..22559876 | 635..380 | 365 | 76.2 | Minus |
3R | 32079331 | 3R | 7982833..7982946 | 660..547 | 315 | 85.1 | Minus |
3R | 32079331 | 3R | 4467636..4467744 | 642..534 | 290 | 84.4 | Minus |
3R | 32079331 | 3R | 22554700..22554757 | 17..74 | 290 | 100 | Plus |
3R | 32079331 | 3R | 22574801..22574887 | 548..634 | 255 | 86.2 | Plus |
3R | 32079331 | 3R | 4444123..4444211 | 635..547 | 220 | 83.1 | Minus |
3R | 32079331 | 3R | 9813350..9813433 | 380..463 | 195 | 82.1 | Plus |
3R | 32079331 | 3R | 22532980..22533064 | 635..551 | 185 | 81.2 | Minus |
Blast to na_te.dros performed on 2014-11-27 15:01:40 has no hits.
BO04474.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:40:48 Download gff for
BO04474.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6921-RC | 1..969 | 17..985 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:10:19 Download gff for
BO04474.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6921-RC | 157..1129 | 10..982 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:36:13 Download gff for
BO04474.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
bond-RB | 266..1231 | 17..984 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:40:48 Download gff for
BO04474.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6921-RC | 157..1129 | 10..982 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:58:12 Download gff for
BO04474.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
bond-RB | 266..1231 | 17..984 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:58:12 Download gff for
BO04474.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 22554700..22554757 | 17..74 | 100 | -> | Plus |
3R | 22554823..22555013 | 75..265 | 100 | -> | Plus |
3R | 22555404..22556120 | 266..984 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:36:13 Download gff for
BO04474.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 18380422..18380479 | 17..74 | 100 | -> | Plus |
arm_3R | 18380545..18380735 | 75..265 | 100 | -> | Plus |
arm_3R | 18381126..18381842 | 266..984 | 99 | | Plus |
BO04474.pep Sequence
Translation from 16 to 1000
> BO04474.pep
MTNYIKIVEERISGLSKGVDETVDSWFLMSSPMPVVAVVLVYLAFVLKIG
PEYMKNRKPMDLKRIMVFYNAFQVLYSIWMCRTSIQESNVMASIFSKKCE
INRTREQNLTLYSGAWFYFFSKIIDLLDTTFFVLRKKDNQVSFLHVYHHT
ITVLFSWGYLKYAPGEQGVIIGILNSGVHIIMYFYYMVAAMGPQYQKYLW
WKKYMTSIQLIQFVLILGYMLTVGAKGCNMPKTLTFFFVGNTVIFLYLFG
NFYRKTYKKAKSVDGGSRTTGSSLAQSALRAAGGMGCMPQTMNAGKHLLQ
NGQVGKAYIDLNNNSVKPMKLEASFLDH
BO04474.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:31:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
bond-PC | 322 | CG6921-PC | 1..322 | 1..322 | 1689 | 100 | Plus |
bond-PA | 322 | CG6921-PA | 1..322 | 1..322 | 1689 | 100 | Plus |
bond-PB | 322 | CG6921-PB | 1..322 | 1..322 | 1689 | 100 | Plus |
CG5278-PA | 295 | CG5278-PA | 21..261 | 20..262 | 576 | 45.2 | Plus |
CG31522-PF | 365 | CG31522-PF | 3..297 | 7..294 | 561 | 37.8 | Plus |