Clone BO04474 Report

Search the DGRC for BO04474

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:44
Well:74
Vector:pDNR-Dual
Associated Gene/Transcriptbond-RA
Protein status:BO04474.pep: validated full length
Sequenced Size:1000

Clone Sequence Records

BO04474.3prime Sequence

866 bp (829 high quality bases) assembled on 2005-12-01

> BO04474.3prime
ATGGTCTAGAAAGCTTGCTTCCAGCTTCATGGGCTTCACGCTGTTGTTGT
TCAGATCGATGTACGCCTTTCCGACCTGGCCATTCTGGAGCAGATGCTTA
CCGGCGTTCATGGTCTGCGGCATGCAACCCATACCGCCGGCGGCACGCAG
AGCGGATTGAGCCAAACTACTGCCGGTGGTGCGACTGCCTCCATCCACGG
ACTTGGCCTTCTTGTAGGTCTTGCGATAGAAATTGCCGAACAGGTAAAGG
AAGATGACCGTGTTGCCCACGAAGAAGAAGGTCAGTGTCTTGGGCATGTT
GCAGCCCTTGGCGCCCACGGTCAGCATGTAGCCCAGGATGAGGACGAACT
GGATCAGCTGGATGCTGGTCATGTACTTCTTCCACCACAGGTACTTCTGG
TACTGGGGTCCCATTGCGGCCACCATGTAGTAGAAGTACATGATAATGTG
CACGCCCGAGTTGAGAATGCCAATGATCACGCCCTGCTCGCCGGGAGCGT
ACTTCAGGTAGCCCCAGGAGAAGAGCACCGTGATGGTGTGATGGTACACG
TGTAGGAAGGACACCTGGTTGTCCTTCTTGCGCAGCACAAAGAACGTCGT
GTCCAGCAGATCGATGATCTTCGAGAAAAAGTAGAACCAGGCACCGGAAT
AGAGGGTCAGATTCTGCTCCCTGGTGCGGTTAATCTCGCACTTCTTCGAG
AAGATCGACGCCATCACATTGCTCTCTTGGATGGACGTGCGGCACATCCA
AATGGAGTACAAGACCTGAAAGGCATTATAGAACACCATGATGCGCTTGA
GGTCCATGGGCTTGCGATTCTTCATGTACTCGGGTCCGATTTTCAGAACA
AACGCCAGATAGACGA

BO04474.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:05:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG6921-PB 969 CG6921-RB 119..966 866..19 4240 100 Minus
CG6921-PA 969 CG6921-RA 119..966 866..19 4240 100 Minus
CG6921-PC 969 CG6921-RC 119..966 866..19 4240 100 Minus
CG33110-PA 1014 CG33110-RA 645..687 442..400 140 93 Minus
CG2781-PA 990 CG2781-RA 586..612 399..373 135 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:22:15
Subject Length Description Subject Range Query Range Score Percent Strand
bond-RC 1503 CG6921-RC 282..1129 866..19 4240 100 Minus
bond-RA 1627 CG6921-RA 406..1253 866..19 4240 100 Minus
bond-RB 1605 CG6921-RB 384..1231 866..19 4240 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:22:06
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 22555403..22556120 736..19 3590 100 Minus
3R 32079331 3R 22554883..22555013 866..736 655 100 Minus
3R 32079331 3R 22559621..22559876 366..621 365 76.2 Plus
3R 32079331 3R 7982833..7982946 341..454 315 85.1 Plus
3R 32079331 3R 4467636..4467744 359..467 290 84.4 Plus
3R 32079331 3R 22574801..22574887 453..367 255 86.2 Minus
3R 32079331 3R 4444123..4444211 366..454 220 83.1 Plus
3R 32079331 3R 9813350..9813433 621..538 195 82.1 Minus
3R 32079331 3R 22532980..22533064 366..450 185 81.2 Plus
Blast to na_te.dros performed on 2015-02-12 06:22:10 has no hits.

BO04474.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:03:48 Download gff for BO04474.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6921-PB 120..969 16..865 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:17:17 Download gff for BO04474.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6921-PC 120..969 16..865 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:26:29 Download gff for BO04474.3prime
Subject Subject Range Query Range Percent Splice Strand
bond-RB 385..1231 19..865 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:08:44 Download gff for BO04474.3prime
Subject Subject Range Query Range Percent Splice Strand
bond-RB 385..1231 19..865 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:08:44 Download gff for BO04474.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 22554884..22555013 736..865 100 -> Minus
3R 22555404..22556120 19..735 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:26:29 Download gff for BO04474.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 18380606..18380735 736..865 100 -> Minus
arm_3R 18381126..18381842 19..735 100   Minus

BO04474.5prime Sequence

833 bp (776 high quality bases) assembled on 2005-11-29

> BO04474.5prime
GAAGTTATCAGTCGACATGACGAACTACATAAAGATTGTCGAGGAGCGAA
TCTCCGGCCTCTCAAAAGGAGTGGATGAGACGGTGGACAGCTGGTTCCTA
ATGAGCTCACCTATGCCCGTGGTGGCCGTGGTTCTCGTCTATCTGGCGTT
TGTTCTGAAAATCGGACCCGAGTACATGAAGAATCGCAAGCCCATGGACC
TCAAGCGCATCATGGTGTTCTATAATGCCTTTCAGGTCTTGTACTCCATT
TGGATGTGCCGCACGTCCATCCAAGAGAGCAATGTGATGGCGTCGATCTT
CTCGAAGAAGTGCGAGATTAACCGCACCAGGGAGCAGAATCTGACCCTCT
ATTCCGGTGCCTGGTTCTACTTTTTCTCGAAGATCATCGATCTGCTGGAC
ACGACGTTCTTTGTGCTGCGCAAGAAGGACAACCAGGTGTCCTTCCTACA
CGTGTACCATCACACCATCACGGTGCTCTTCTCCTGGGGCTACCTGAAGT
ACGCTCCCGGCGAGCAGGGCGTGATCATTGGCATTCTCAACTCGGGCGTG
CACATTATCATGTACTTCTACTACATGGTGGCCGCAATGGGACCCCAGTA
CCAGAAGTACCTGTGGTGGAAGAAGTACATGACCAGCATCCAGCTGATCC
AGTTCGTCCTCATCCTGGGCTACATGCTGACCGTGGGCGCCAAGGGCTGC
AACATGCCCAAGACACTGACCTTCTTCTTCGTGGGCAACACGGTCATCTT
CCTTTACCTGTTCGGCAATTTCTATCGCAAGACCTACAAGAAGGCCAAGT
CCGTGGATGGAGGCAGTCGCACCACCGGCAGTA

BO04474.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:05:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG6921-PB 969 CG6921-RB 1..817 17..833 4085 100 Plus
CG6921-PA 969 CG6921-RA 1..817 17..833 4085 100 Plus
CG6921-PC 969 CG6921-RC 1..817 17..833 4085 100 Plus
CG33110-PA 1014 CG33110-RA 645..687 559..601 140 93 Plus
CG2781-PA 990 CG2781-RA 586..612 602..628 135 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:06:55
Subject Length Description Subject Range Query Range Score Percent Strand
bond-RC 1503 CG6921-RC 164..980 17..833 4085 100 Plus
bond-RA 1627 CG6921-RA 288..1104 17..833 4085 100 Plus
bond-RB 1605 CG6921-RB 266..1082 17..833 4085 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 02:06:50
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 22555403..22555971 265..833 2845 100 Plus
3R 32079331 3R 22554822..22555013 74..265 960 100 Plus
3R 32079331 3R 22559621..22559876 635..380 365 76.2 Minus
3R 32079331 3R 7982833..7982946 660..547 315 85.1 Minus
3R 32079331 3R 4467636..4467744 642..534 290 84.4 Minus
3R 32079331 3R 22554700..22554757 17..74 290 100 Plus
3R 32079331 3R 22574801..22574887 548..634 255 86.2 Plus
3R 32079331 3R 4444123..4444211 635..547 220 83.1 Minus
3R 32079331 3R 9813350..9813433 380..463 195 82.1 Plus
3R 32079331 3R 22532980..22533064 635..551 185 81.2 Minus
Blast to na_te.dros performed on 2015-02-13 02:06:53 has no hits.

BO04474.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:03:49 Download gff for BO04474.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6921-PB 1..816 17..832 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:17:18 Download gff for BO04474.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6921-PC 1..816 17..832 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 06:34:37 Download gff for BO04474.5prime
Subject Subject Range Query Range Percent Splice Strand
bond-RB 259..1081 10..832 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:38:26 Download gff for BO04474.5prime
Subject Subject Range Query Range Percent Splice Strand
bond-RB 259..1081 10..832 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:38:26 Download gff for BO04474.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 22554693..22554757 10..74 95 -> Plus
3R 22554823..22555013 75..265 100 -> Plus
3R 22555404..22555970 266..832 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 06:34:37 Download gff for BO04474.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 18380415..18380479 10..74 95 -> Plus
arm_3R 18380545..18380735 75..265 100 -> Plus
arm_3R 18381126..18381692 266..832 100   Plus

BO04474.complete Sequence

1000 bp (1000 high quality bases) assembled on 2005-09-08

GenBank Submission: FJ629777

> BO04474.complete
GAAGTTATCAGTCGACATGACGAACTACATAAAGATTGTCGAGGAGCGAA
TCTCCGGCCTCTCAAAAGGAGTGGATGAGACGGTGGACAGCTGGTTCCTA
ATGAGCTCACCTATGCCCGTGGTGGCCGTGGTTCTCGTCTATCTGGCGTT
TGTTCTGAAAATCGGACCCGAGTACATGAAGAATCGCAAGCCCATGGACC
TCAAGCGCATCATGGTGTTCTATAATGCCTTTCAGGTCTTGTACTCCATT
TGGATGTGCCGCACGTCCATCCAAGAGAGCAATGTGATGGCGTCGATCTT
CTCGAAGAAGTGCGAGATTAACCGCACCAGGGAGCAGAATCTGACCCTCT
ATTCCGGTGCCTGGTTCTACTTTTTCTCGAAGATCATCGATCTGCTGGAC
ACGACGTTCTTTGTGCTGCGCAAGAAGGACAACCAGGTGTCCTTCCTACA
CGTGTACCATCACACCATCACGGTGCTCTTCTCCTGGGGCTACCTGAAGT
ACGCTCCCGGCGAGCAGGGCGTGATCATTGGCATTCTCAACTCGGGCGTG
CACATTATCATGTACTTCTACTACATGGTGGCCGCAATGGGACCCCAGTA
CCAGAAGTACCTGTGGTGGAAGAAGTACATGACCAGCATCCAGCTGATCC
AGTTCGTCCTCATCCTGGGCTACATGCTGACCGTGGGCGCCAAGGGCTGC
AACATGCCCAAGACACTGACCTTCTTCTTCGTGGGCAACACGGTCATCTT
CCTTTACCTGTTCGGCAATTTCTATCGCAAGACCTACAAGAAGGCCAAGT
CCGTGGATGGAGGCAGTCGCACCACCGGCAGTAGTTTGGCTCAATCCGCT
CTGCGTGCCGCCGGCGGTATGGGTTGCATGCCGCAGACCATGAACGCCGG
TAAGCATCTGCTCCAGAATGGCCAGGTCGGAAAGGCGTACATCGATCTGA
ACAACAACAGCGTGAAGCCCATGAAGCTGGAAGCAAGCTTTCTAGACCAT

BO04474.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:01:41
Subject Length Description Subject Range Query Range Score Percent Strand
bond-RC 969 CG6921-PC 1..966 17..982 4830 100 Plus
bond-RA 969 CG6921-PA 1..966 17..982 4830 100 Plus
bond-RB 969 CG6921-PB 1..966 17..982 4830 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:01:43
Subject Length Description Subject Range Query Range Score Percent Strand
bond-RC 1503 CG6921-RC 164..1129 17..982 4830 100 Plus
bond-RA 1627 CG6921-RA 288..1253 17..982 4830 100 Plus
bond-RB 1605 CG6921-RB 266..1231 17..982 4830 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:01:39
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 22555403..22556120 265..982 3590 100 Plus
3R 32079331 3R 22554822..22555013 74..265 960 100 Plus
3R 32079331 3R 22559621..22559876 635..380 365 76.2 Minus
3R 32079331 3R 7982833..7982946 660..547 315 85.1 Minus
3R 32079331 3R 4467636..4467744 642..534 290 84.4 Minus
3R 32079331 3R 22554700..22554757 17..74 290 100 Plus
3R 32079331 3R 22574801..22574887 548..634 255 86.2 Plus
3R 32079331 3R 4444123..4444211 635..547 220 83.1 Minus
3R 32079331 3R 9813350..9813433 380..463 195 82.1 Plus
3R 32079331 3R 22532980..22533064 635..551 185 81.2 Minus
Blast to na_te.dros performed on 2014-11-27 15:01:40 has no hits.

BO04474.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:40:48 Download gff for BO04474.complete
Subject Subject Range Query Range Percent Splice Strand
CG6921-RC 1..969 17..985 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:10:19 Download gff for BO04474.complete
Subject Subject Range Query Range Percent Splice Strand
CG6921-RC 157..1129 10..982 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:36:13 Download gff for BO04474.complete
Subject Subject Range Query Range Percent Splice Strand
bond-RB 266..1231 17..984 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:40:48 Download gff for BO04474.complete
Subject Subject Range Query Range Percent Splice Strand
CG6921-RC 157..1129 10..982 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:58:12 Download gff for BO04474.complete
Subject Subject Range Query Range Percent Splice Strand
bond-RB 266..1231 17..984 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:58:12 Download gff for BO04474.complete
Subject Subject Range Query Range Percent Splice Strand
3R 22554700..22554757 17..74 100 -> Plus
3R 22554823..22555013 75..265 100 -> Plus
3R 22555404..22556120 266..984 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:36:13 Download gff for BO04474.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 18380422..18380479 17..74 100 -> Plus
arm_3R 18380545..18380735 75..265 100 -> Plus
arm_3R 18381126..18381842 266..984 99   Plus

BO04474.pep Sequence

Translation from 16 to 1000

> BO04474.pep
MTNYIKIVEERISGLSKGVDETVDSWFLMSSPMPVVAVVLVYLAFVLKIG
PEYMKNRKPMDLKRIMVFYNAFQVLYSIWMCRTSIQESNVMASIFSKKCE
INRTREQNLTLYSGAWFYFFSKIIDLLDTTFFVLRKKDNQVSFLHVYHHT
ITVLFSWGYLKYAPGEQGVIIGILNSGVHIIMYFYYMVAAMGPQYQKYLW
WKKYMTSIQLIQFVLILGYMLTVGAKGCNMPKTLTFFFVGNTVIFLYLFG
NFYRKTYKKAKSVDGGSRTTGSSLAQSALRAAGGMGCMPQTMNAGKHLLQ
NGQVGKAYIDLNNNSVKPMKLEASFLDH

BO04474.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:31:40
Subject Length Description Subject Range Query Range Score Percent Strand
bond-PC 322 CG6921-PC 1..322 1..322 1689 100 Plus
bond-PA 322 CG6921-PA 1..322 1..322 1689 100 Plus
bond-PB 322 CG6921-PB 1..322 1..322 1689 100 Plus
CG5278-PA 295 CG5278-PA 21..261 20..262 576 45.2 Plus
CG31522-PF 365 CG31522-PF 3..297 7..294 561 37.8 Plus