Clone BO04475 Report

Search the DGRC for BO04475

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:44
Well:75
Vector:pDNR-Dual
Associated Gene/TranscriptCG11486-RG
Protein status:BO04475.pep: Imported from assembly
Sequenced Size:2404

Clone Sequence Records

BO04475.3prime Sequence

933 bp (838 high quality bases) assembled on 2005-12-01

> BO04475.3prime
ATGGTCTAGAAAGCTTGCGTTGGCCGCACTTGACATCAGTTCGGAGAAGG
CGTTCTCCAGACAATTCTTGAGTTCAGCATAGGAGACGATGAGTACCGAT
TGCTCGTCGCGGGACATCAGTTGCACGCGCTCTATGGAGCCAGCATCCAG
CTTGTTGAGGCATTGTACAATGTGTGCGTGATCTAGCCAGGGCCGGCCAT
CCTCAGTGACGGAATGGAACAAATAATCACGGAATAATTTCAACATGTAT
CTATCACCAGTCTCAGACCAAGTGCAGTCCAGATTAAAGTCGGGTCGCTC
GTTGATGCTATTAAGTTTGACCAAAATGCGATATAACCGCCCGTTCTCCA
TCTCCTTGGCCAACTCGTCCTCCTGCATATCAATTTTGCTCTGCAGTGCA
TCCAGTTGCGTATAGAAGCGGGCACCAATCATCGGCATCAGGTCGGTCAC
GGAGCGACGATTATTGGTGGTGAAGAGGTAAACAATAAAGTTTCGCAGAT
CGGTGGAGTAGTTTCGCGTGACCATATCGATGCTGGACTGGACATTGTCG
CGTTGCACGGATTGAAGACAGCGGCAGGCCAAAGCTAATACTAAGCGACC
CAAAGCGGTCAGATCGTCCTGCTGATGCATATTAACCAGCGCCAAGGGAT
TGGATGCATTCGGATCGAATTGCGTTATATCCGAAATGCAGCATGAGCTA
AACCGTACACGCTTGCCCGTCACTATAATCTTTGTGGGATCCAGAACCTT
GCAGGCAAGACCGGCATGGTGGATGGCTTTTAAGCCGGCGGTCAGCTGCA
TGATGATCGACCAGATGGTGGCCTCCGGTAGCAGCGGTCCATTGCTCGTT
CGCTGCATGTTACTCTTATGACTGAAGGGGCGGGGCTCGCCTTGGAATGG
ATCAGTGTACCCGTTGGGCTCTGGCGCCGGAGT

BO04475.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:05:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG11486-PD 2229 CG11486-RD 1312..2226 933..19 4525 99.7 Minus
CG11486-PA 2229 CG11486-RA 1312..2226 933..19 4525 99.7 Minus
CG11486-PE 2322 CG11486-RE 1405..2319 933..19 4525 99.7 Minus
CG11486-PK 2367 CG11486-RK 1450..2364 933..19 4525 99.7 Minus
CG11486-PL 2274 CG11486-RL 1357..2271 933..19 4525 99.7 Minus
CG11486-PM 2367 CG11486-RM 1450..2364 933..19 4525 99.7 Minus
CG11486-PN 2367 CG11486-RN 1450..2364 933..19 4525 99.7 Minus
CG11486-PF 2367 CG11486-RF 1450..2364 933..19 4525 99.7 Minus
CG11486-PH 2367 CG11486-RH 1450..2364 933..19 4525 99.7 Minus
CG11486-PG 2373 CG11486-RG 1456..2370 933..19 4525 99.7 Minus
CG11486-PJ 2367 CG11486-RJ 1450..2364 933..19 4525 99.7 Minus
CG11486-PB 2229 CG11486-RB 1312..2226 933..19 4525 99.7 Minus
CG11486-PC 2343 CG11486-RC 1426..2340 933..19 4525 99.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:07:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG11486-RR 4616 CG11486-RR 1595..2509 933..19 4545 99.8 Minus
CG11486-RQ 3277 CG11486-RQ 2028..2942 933..19 4545 99.8 Minus
CG11486-RP 3145 CG11486-RP 1896..2810 933..19 4545 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:07:24
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 3087699..3087890 481..290 960 100 Minus
3L 28110227 3L 3087957..3088121 289..125 825 100 Minus
3L 28110227 3L 3087504..3087642 620..482 695 100 Minus
3L 28110227 3L 3087311..3087441 748..618 655 100 Minus
3L 28110227 3L 3087130..3087256 874..748 635 100 Minus
3L 28110227 3L 3088192..3088299 126..19 540 100 Minus
3L 28110227 3L 3087008..3087069 933..872 280 96.8 Minus
Blast to na_te.dros performed on 2015-02-12 01:07:27 has no hits.

BO04475.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:03:50 Download gff for BO04475.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11486-PC 1426..2343 16..933 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:17:20 Download gff for BO04475.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11486-PC 1426..2343 16..933 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 11:38:17 Download gff for BO04475.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11486-RP 1896..2815 13..933 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:01:56 Download gff for BO04475.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11486-RP 1896..2815 13..933 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 05:01:56 Download gff for BO04475.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 3087008..3087069 872..933 96 -> Minus
3L 3087133..3087255 749..871 100 -> Minus
3L 3087311..3087440 619..748 100 -> Minus
3L 3087506..3087642 482..618 100 -> Minus
3L 3087699..3087890 290..481 100 -> Minus
3L 3087957..3088119 127..289 100 -> Minus
3L 3088192..3088304 13..126 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 11:38:17 Download gff for BO04475.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 3087008..3087069 872..933 96 -> Minus
arm_3L 3087133..3087255 749..871 100 -> Minus
arm_3L 3087311..3087440 619..748 100 -> Minus
arm_3L 3087506..3087642 482..618 100 -> Minus
arm_3L 3087699..3087890 290..481 100 -> Minus
arm_3L 3087957..3088119 127..289 100 -> Minus
arm_3L 3088192..3088304 13..126 97   Minus

BO04475.5prime Sequence

838 bp (751 high quality bases) assembled on 2005-12-01

> BO04475.5prime
GAAGTTATCAGTCGACATGTGCTCGACTTATGGACTCTTATCTTTTGAGT
TTTCAGATACGGCTGCTATGGATCCAATTTTCTTCTCGCCAACGAATGGA
ATACCGTCAGAGAGTAAACTCGCCACTTATATGAATCGACAGAATGTCGC
CACACCGAGCGGTTATGGGCTGAATAACGGGTTCTCACTACTTAATTTGG
ATTCGCCCCTAAATAAAAAGTCCCAGGTCACGCCGCAGTCGCCCGAGTTC
ATTCCAACGCGCCTTGGCTCGACGCCCAACTTCTATGCACCATATCACAA
CGCGCCCATGCAATTAAGTAATGGGCTCAATGGCGTCAATGGGTTAACAG
CCGCCGCAGCAGCAGCAGCAGCAGCCGCCGCCGCCGCCGCAGCAGCAGTT
CCCTCCTCCACGTCATCGGCGTCCTCCGCCTCGGTGACCATCAGCAAAAC
GGCCAACGGTGGCGCCTCCATGCTCGCCCTGCAAAAGACCGCATCCATCG
CCTCTGTAACCATCGCACAACAGCAGCCACAGCATCCACAGAAACAGCAA
CAGCATCCGCCGTCGGTGGGCGGAGGAGCTGTGTCCGCCGCCTCCGCCCC
CATTGCCATTAGTGGCGCTCCACCGAATCCCGCCGCAGCTCCGTTCGTCA
GCAGCATGTCCGCTCAGACGCCGCTCAAGGGGAGGGGCGCCATGATGCGC
CAGGAATCACCAACGGCAGCCATGATTTCGGGCGCAGGGCCAGGTGAGAA
GTCGCCACCGCACGGGATGACGCCGCACGGAGCATCGCCCATACCCTCAG
CGCTGCCCACCAGCGTGCACCAGGAGAACGTAGGCGGC

BO04475.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:06:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG11486-PG 2373 CG11486-RG 1..822 17..838 4085 99.8 Plus
CG11486-PK 2367 CG11486-RK 32..816 54..838 3900 99.8 Plus
CG11486-PM 2367 CG11486-RM 32..816 54..838 3900 99.8 Plus
CG11486-PN 2367 CG11486-RN 32..816 54..838 3900 99.8 Plus
CG11486-PF 2367 CG11486-RF 32..816 54..838 3900 99.8 Plus
CG11486-PH 2367 CG11486-RH 32..816 54..838 3900 99.8 Plus
CG11486-PJ 2367 CG11486-RJ 32..816 54..838 3900 99.8 Plus
CG11486-PC 2343 CG11486-RC 11..792 57..838 3885 99.8 Plus
CG11486-PE 2322 CG11486-RE 1..771 68..838 3830 99.8 Plus
CG11486-PL 2274 CG11486-RL 111..723 226..838 3040 99.8 Plus
CG11486-PD 2229 CG11486-RD 66..678 226..838 3040 99.8 Plus
CG11486-PA 2229 CG11486-RA 66..678 226..838 3040 99.8 Plus
CG11486-PB 2229 CG11486-RB 66..678 226..838 3040 99.8 Plus
CG11486-PL 2274 CG11486-RL 32..111 54..133 400 100 Plus
CG11486-PD 2229 CG11486-RD 1..66 68..133 330 100 Plus
CG11486-PA 2229 CG11486-RA 1..66 68..133 330 100 Plus
CG11486-PB 2229 CG11486-RB 1..66 68..133 330 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 16:06:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG11486-RG 3281 CG11486-RG 577..1398 17..838 4095 99.9 Plus
CG11486-RQ 3277 CG11486-RQ 610..1394 54..838 3910 99.9 Plus
CG11486-RJ 3133 CG11486-RJ 466..1250 54..838 3910 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 16:05:53
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 3085198..3085801 221..824 3005 99.8 Plus
3L 28110227 3L 3084807..3084909 133..235 485 98.1 Plus
3L 28110227 3L 3083731..3083809 55..133 395 100 Plus
3L 28110227 3L 3079989..3080028 17..56 200 100 Plus
Blast to na_te.dros performed 2015-02-12 16:06:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2318..2394 482..557 148 67.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6668..6794 438..557 148 63 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6733..6773 517..557 142 82.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2321..2364 517..560 139 79.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6745..6818 488..560 133 69.7 Plus
roo 9092 roo DM_ROO 9092bp 1055..1145 473..560 132 65.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6841..6884 517..560 130 77.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6766..6838 488..562 126 66.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1545..1588 518..561 121 75 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2599..2799 346..557 117 54 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2333..2373 517..557 115 75.6 Plus
roo 9092 roo DM_ROO 9092bp 1123..1163 517..557 115 75.6 Plus

BO04475.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:03:51 Download gff for BO04475.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11486-PG 1..822 17..838 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:17:21 Download gff for BO04475.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11486-PG 1..822 17..838 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:29:16 Download gff for BO04475.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11486-RG 571..1398 9..838 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:41:10 Download gff for BO04475.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11486-RG 571..1398 9..838 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:41:10 Download gff for BO04475.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 3079983..3080028 9..56 91 -> Plus
3L 3083733..3083809 57..133 100 -> Plus
3L 3084808..3084900 134..226 100 -> Plus
3L 3085204..3085800 227..823 99 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:29:16 Download gff for BO04475.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 3079983..3080028 9..56 91 -> Plus
arm_3L 3083733..3083809 57..133 100 -> Plus
arm_3L 3084808..3084900 134..226 100 -> Plus
arm_3L 3085204..3085800 227..823 99 -> Plus

BO04475.complete Sequence

2404 bp assembled on 2008-08-14

GenBank Submission: FJ629778

> BO04475.complete
GAAGTTATCAGTCGACATGTGCTCGACTTATGGACTCTTATCTTTTGAGT
TTTCAGATACGGCTGCTATGGATCCAATTTTCTTCTCGCCAACGAATGGA
ATACCGTCAGAGAGTAAACTCGCCACTTATATGAATCGACAGAATGTCGC
CACACCGAGCGGTTATGGGCTGAATAACGGGTTCTCACTACTTAATTTGG
ATTCGCCCCTAAATAAAAAGTCCCAGGTCACGCCGCAGTCGCCCGAGTTC
ATTCCAACGCGCCTTGGCTCGACGCCCAACTTCTATGCACCATATCACAA
CGCGCCCATGCAATTAAGTAATGGGCTCAATGGCGTCAATGGGTTAACAG
CCGCCGCAGCAGCAGCAGCAGCAGCCGCCGCCGCCGCCGCAGCAGCAGTT
CCCTCCTCCACGTCATCGGCGTCCTCCGCCTCGGTGACCATCAGCAAAAC
GGCCAACGGTGGCGCCTCCATGCTCGCCCTGCAAAAGACCGCATCCATCG
CCTCTGTAACCATCGCACAACAGCAGCCACAGCATCCACAGAAACAGCAA
CAGCATCCGCCGTCGGTGGGCGGAGGAGCTGTGTCCGCCGCCTCCGCCCC
CATTGCCATTAGTGGCGCTCCACCGAATCCCGCCGCAGCTCCGTTCGTCA
GCAGCATGTCCGCTCAGACGCCGCTCAAGGGGAGGGGCGCCATGATGCGC
CAGGAATCACCAACGGCAGCCATGATTTCGGGCGCAGGGCCAGGTGAGAA
GTCGCCACCGCACGGGATGACGCCGCACGGAGCATCGCCCATACCATCAG
CGCTGCCCACCAGCGTGCACCAGGAGAACGTAGGCGGCACCATATACTTC
TATCCGACTGCCAACGCACAGAACAGCCAGCCCGTCGTCAATTCCATGGT
GGTGGATGGAACGCATCCGGCTCTCCATGGCGTGAGTGCTGTGGCGCCGA
TGAGTGCGGGCGTTCCGGCGGCCATGATGTACACGGGGCATGTGTATCCG
GGACCGTCCTCCAACGTGGTCACCATGCAGCCAAAGACGCTGCTGGAGTC
GGCCTTCTTTATGCCCGACGAGATGCGCGCCGAAGTCCTCGCCCGCAACG
AGATCTCTAACCTGATCATGGACGCAGCGGAGGCTGCGCAGCACGCTCTA
CCGCTGGAGGTGGAGAACTACCATGCCCTGTATCCACTGGAACCGCCGGC
GCAGCCGTTGCACGCCAAGCTCACGTTCCCCGCCACCACTTATAGGGCCA
CGCACAACACGACGGGCTACAAGTACTGCCTGCGAAGAATACATGGTTTC
CGCCTGCAGTCGACCAAGTGCATGACGCTGGTGGAGATGTGGAAGAAGCT
GCAGCACACGAATGTGGTACAACTGCGTGAGGTGTTCACGACGAAAGCAT
TTGGTGATAACTCTTTAGTATTAGTGTACGACTATCATCCCGGCTCACAA
ACATTACTGGCCAAATACTTCACTCCGGCGCCAGAGACCAACGGGTACAC
TGATCCATTCCAAGGCGAGGCCCGCCCCTTCAGTCATAAGAGTAACATGC
AGCGAACGAGCAATGGACCGCTGCTACCGGAGGCCACCATCTGGTCGATC
ATCATGCAGCTGACCGCCGGCTTAAAAGCCATCCACCATGCCGGTCTTGC
CTGCAAGGTTCTGGATCCCACAAAGATTATAGTGACGGGCAAGCGTGTAC
GGTTTAGCTCATGCTGCATTTCGGATATAACGCAATTCGATCCGAATGCA
TCCAATCCCTTGGCGCTGGTTAATATGCATCAGCAGGACGATCTGACCGC
TTTGGGTCGCTTAGTATTAGCTTTGGCCTGCCGCTGTCTTCAATCCGTGC
AACGCGACAATGTCCAGTCCAGCATCGATATGGTCACGCGAAACTACTCC
ACCGATCTGCGAAACTTTATTGTTTACCTCTTCACCACCAATAATCGTCG
CTCCGTGACCGACCTGATGCCGATGATTGGTGCCCGCTTCTATACGCAAC
TGGATGCACTGCAGAGCAAAATTGATATGCAGGAGGACGAGTTGGCCAAG
GAGATGGAGAACGGGCGGTTATATCGCATTTTGGTCAAACTTAATAGCAT
CAACGAGCGACCCGACTTTAATCTGGACTGCACTTGGTCTGAGACTGGTG
ATAGATACATGTTGAAATTATTCCGTGATTATTTGTTCCATTCCGTCACT
GAGGATGGCCGGCCCTGGCTAGATCACGCACACATTGTACAATGCCTCAA
CAAGCTGGATGCTGGCTCCATAGAGCGCGTGCAACTGATGTCCCGCGACG
AGCAATCGGTACTCATCGTCTCCTATGCTGAACTCAAGAATTGTCTGGAG
AACGCCTTCTCCGAACTGATGTCAAGTGCGGCCAACGCAAGCTTTCTAGA
CCAT

BO04475.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:51:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG11486-RG 2373 CG11486-PG 1..2370 17..2386 11850 100 Plus
CG11486-RQ 2367 CG11486-PQ 32..2364 54..2386 11665 100 Plus
CG11486-RJ 2367 CG11486-PJ 32..2364 54..2386 11665 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:51:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG11486-RG 3281 CG11486-RG 577..2946 17..2386 11850 100 Plus
CG11486-RQ 3277 CG11486-RQ 610..2942 54..2386 11665 100 Plus
CG11486-RJ 3133 CG11486-RJ 466..2798 54..2386 11665 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:51:03
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 3085198..3085801 221..824 3020 100 Plus
3L 28110227 3L 3085862..3086338 821..1297 2385 100 Plus
3L 28110227 3L 3087699..3087890 1924..2115 960 100 Plus
3L 28110227 3L 3087957..3088121 2116..2280 825 100 Plus
3L 28110227 3L 3087504..3087642 1785..1923 695 100 Plus
3L 28110227 3L 3087311..3087441 1657..1787 655 100 Plus
3L 28110227 3L 3087130..3087256 1531..1657 635 100 Plus
3L 28110227 3L 3086949..3087069 1413..1533 605 100 Plus
3L 28110227 3L 3086397..3086514 1295..1412 590 100 Plus
3L 28110227 3L 3088192..3088299 2279..2386 540 100 Plus
3L 28110227 3L 3084807..3084909 133..235 485 98.1 Plus
3L 28110227 3L 3083731..3083809 55..133 395 100 Plus
3L 28110227 3L 3079989..3080028 17..56 200 100 Plus
Blast to na_te.dros performed 2014-11-27 10:51:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2318..2394 482..557 148 67.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6668..6794 438..557 148 63 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6733..6773 517..557 142 82.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2321..2364 517..560 139 79.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6745..6818 488..560 133 69.7 Plus
roo 9092 roo DM_ROO 9092bp 1055..1145 473..560 132 65.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6841..6884 517..560 130 77.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6766..6838 488..562 126 66.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1545..1588 518..561 121 75 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2333..2373 517..557 115 75.6 Plus
roo 9092 roo DM_ROO 9092bp 1123..1163 517..557 115 75.6 Plus

BO04475.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:39:02 Download gff for BO04475.complete
Subject Subject Range Query Range Percent Splice Strand
CG11486-RG 576..2956 9..2392 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:42:28 Download gff for BO04475.complete
Subject Subject Range Query Range Percent Splice Strand
CG11486-RG 577..2946 17..2388 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:09:09 Download gff for BO04475.complete
Subject Subject Range Query Range Percent Splice Strand
CG11486-RG 582..2951 17..2388 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:32:26 Download gff for BO04475.complete
Subject Subject Range Query Range Percent Splice Strand
CG11486-RG 577..2946 17..2388 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:32:26 Download gff for BO04475.complete
Subject Subject Range Query Range Percent Splice Strand
3L 3079989..3080028 17..56 100 -> Plus
3L 3083733..3083809 57..133 100 -> Plus
3L 3084808..3084900 134..226 100 -> Plus
3L 3085204..3085800 227..823 100 -> Plus
3L 3085865..3086336 824..1295 100 -> Plus
3L 3086398..3086514 1296..1412 100 -> Plus
3L 3086949..3087069 1413..1533 100 -> Plus
3L 3087133..3087255 1534..1656 100 -> Plus
3L 3087311..3087440 1657..1786 100 -> Plus
3L 3087506..3087642 1787..1923 100 -> Plus
3L 3087699..3087890 1924..2115 100 -> Plus
3L 3087957..3088119 2116..2278 100 -> Plus
3L 3088192..3088299 2279..2388 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:42:28 Download gff for BO04475.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 3088192..3088299 2279..2388 98   Plus
arm_3L 3086949..3087069 1413..1533 100 -> Plus
arm_3L 3087133..3087255 1534..1656 100 -> Plus
arm_3L 3087311..3087440 1657..1786 100 -> Plus
arm_3L 3087506..3087642 1787..1923 100 -> Plus
arm_3L 3087699..3087890 1924..2115 100 -> Plus
arm_3L 3087957..3088119 2116..2278 100 -> Plus
arm_3L 3079989..3080028 17..56 100 -> Plus
arm_3L 3083733..3083809 57..133 100 -> Plus
arm_3L 3084808..3084900 134..226 100 -> Plus
arm_3L 3085204..3085800 227..823 100 -> Plus
arm_3L 3085865..3086336 824..1295 100 -> Plus
arm_3L 3086398..3086514 1296..1412 100 -> Plus

BO04475.pep Sequence

Translation from 16 to 2404

> BO04475.pep
MCSTYGLLSFEFSDTAAMDPIFFSPTNGIPSESKLATYMNRQNVATPSGY
GLNNGFSLLNLDSPLNKKSQVTPQSPEFIPTRLGSTPNFYAPYHNAPMQL
SNGLNGVNGLTAAAAAAAAAAAAAAAAVPSSTSSASSASVTISKTANGGA
SMLALQKTASIASVTIAQQQPQHPQKQQQHPPSVGGGAVSAASAPIAISG
APPNPAAAPFVSSMSAQTPLKGRGAMMRQESPTAAMISGAGPGEKSPPHG
MTPHGASPIPSALPTSVHQENVGGTIYFYPTANAQNSQPVVNSMVVDGTH
PALHGVSAVAPMSAGVPAAMMYTGHVYPGPSSNVVTMQPKTLLESAFFMP
DEMRAEVLARNEISNLIMDAAEAAQHALPLEVENYHALYPLEPPAQPLHA
KLTFPATTYRATHNTTGYKYCLRRIHGFRLQSTKCMTLVEMWKKLQHTNV
VQLREVFTTKAFGDNSLVLVYDYHPGSQTLLAKYFTPAPETNGYTDPFQG
EARPFSHKSNMQRTSNGPLLPEATIWSIIMQLTAGLKAIHHAGLACKVLD
PTKIIVTGKRVRFSSCCISDITQFDPNASNPLALVNMHQQDDLTALGRLV
LALACRCLQSVQRDNVQSSIDMVTRNYSTDLRNFIVYLFTTNNRRSVTDL
MPMIGARFYTQLDALQSKIDMQEDELAKEMENGRLYRILVKLNSINERPD
FNLDCTWSETGDRYMLKLFRDYLFHSVTEDGRPWLDHAHIVQCLNKLDAG
SIERVQLMSRDEQSVLIVSYAELKNCLENAFSELMSSAANASFLDH

BO04475.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:13:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG11486-PG 790 CG11486-PG 1..790 1..790 4089 100 Plus
CG11486-PQ 788 CG11486-PQ 5..788 7..790 4022 99.4 Plus
CG11486-PJ 788 CG11486-PJ 5..788 7..790 4022 99.4 Plus
CG11486-PH 788 CG11486-PH 5..788 7..790 4022 99.4 Plus
CG11486-PF 788 CG11486-PF 5..788 7..790 4022 99.4 Plus