Clone BO04476 Report

Search the DGRC for BO04476

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:44
Well:76
Vector:pDNR-Dual
Associated Gene/TranscriptPur-alpha-RA
Protein status:BO04476.pep: validated full length
Sequenced Size:856

Clone Sequence Records

BO04476.3prime Sequence

854 bp (844 high quality bases) assembled on 2005-12-01

> BO04476.3prime
ATGGTCTAGAAAGCTTGCTTTAAGACTATTTGAAGATGTAGGTAAGTTAA
TTTCGGCAGTAATTGAGTCGGACGATTTTTTCATTTTCTCGCAATAATCA
TTAAAAATATCTCGAAAGCGAATCCAACATTTCTCTGGAATAGTTATCGA
AGTCCGGAAGTTATTTTTCACTTCGCTTATCCGCATGTACACTCCTCGAT
TATTTTGTCCGATATCAAAATAAAAATTTTTATTATCCACCTTCATGTGT
CGCTCTTCCGGTAAATCTCCTTTAAACCCTCCATCATTAGCTCCAAACTC
TTCTAACAAATCTGTAAGAGCGTCACGAAACTCGATCATGCCTTGAGCCG
GTAAAGCGATTTGAGATCTAGGCCCCCCTCTTGTTATTGTTTGCGATACC
CGTAAAAATCGGCCACGCGCATTTTCTTTTAAGTCCAAGTAATACCTTCT
GTAATCTTTTATCATCATTTCAGATTTAAGTTTACCATCTTCCGGCAAAT
TGTCGGTGTTTGGTGGACCTAGAGAAGCGTAGTAATCGCTAAATGAGGAT
AAATGGTCACGAAATTCGGCTGCAGTTGAAAGAGCCAAGTAAATTTGACT
TCGTCTACCATCAGCGCCAATCTCAGCAACCTTTATAAAACGGCCTCTTC
TATTTTGTTTTACATCCAAATAAAATCGTTTAGATTGTATTTGCAACATT
TTCGTAGCCAATTCCTGTTCGACGCCGCTTCCTCCTTTAGCAGAAGAATC
GAAGTCGTTCCTACTTGAGGAACCCTCCATATTTGCAACATTATATTTTG
ATCCTGAGATGCCATCATCTCCACTTCCCAAATCGGACATGTCGACTGAT
AACT

BO04476.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:06:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG1507-PA 825 Pur-alpha-RA 1..822 840..19 4110 100 Minus
CG1507-PC 825 Pur-alpha-RC 1..822 840..19 4110 100 Minus
CG1507-PB 828 Pur-alpha-RB 1..563 840..278 2815 100 Minus
CG1507-PD 783 Pur-alpha-RD 22..518 774..278 2485 100 Minus
CG1507-PB 828 Pur-alpha-RB 566..825 278..19 1300 100 Minus
CG1507-PD 783 Pur-alpha-RD 521..780 278..19 1300 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:07:37
Subject Length Description Subject Range Query Range Score Percent Strand
Pur-alpha-RE 2719 CG1507-RE 394..1215 840..19 4110 100 Minus
Pur-alpha-RC 1238 CG1507-RC 239..1060 840..19 4110 100 Minus
Pur-alpha-RA 1313 CG1507-RA 314..1135 840..19 4110 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:07:32
Subject Length Description Subject Range Query Range Score Percent Strand
4 1348131 4 565601..565753 171..19 765 100 Minus
4 1348131 4 564540..564664 400..276 625 100 Minus
4 1348131 4 564359..564482 520..397 620 100 Minus
4 1348131 4 560469..560583 736..622 575 100 Minus
4 1348131 4 565409..565517 278..170 545 100 Minus
4 1348131 4 560716..560822 623..517 535 100 Minus
4 1348131 4 560349..560412 797..734 320 100 Minus
4 1348131 4 560258..560300 840..798 215 100 Minus
Blast to na_te.dros performed on 2015-02-12 01:07:35 has no hits.

BO04476.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:03:52 Download gff for BO04476.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1507-PC 1..825 15..840 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:17:22 Download gff for BO04476.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1507-PC 1..825 15..840 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 11:38:19 Download gff for BO04476.3prime
Subject Subject Range Query Range Percent Splice Strand
Pur-alpha-RA 307..1138 15..849 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:02:19 Download gff for BO04476.3prime
Subject Subject Range Query Range Percent Splice Strand
Pur-alpha-RA 307..1138 15..849 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 05:02:19 Download gff for BO04476.3prime
Subject Subject Range Query Range Percent Splice Strand
4 565410..565515 172..277 100 -> Minus
4 565601..565752 20..171 100 -> Minus
4 560251..560300 798..849 92 -> Minus
4 560349..560411 735..797 100 -> Minus
4 560471..560583 622..734 100 -> Minus
4 560718..560820 519..621 100 -> Minus
4 564361..564479 400..518 100 -> Minus
4 564541..564662 278..399 100 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 11:38:19 Download gff for BO04476.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_4 584987..585105 400..518 100 -> Minus
arm_4 585167..585288 278..399 100 -> Minus
arm_4 586036..586141 172..277 100 -> Minus
arm_4 586227..586378 20..171 100 -> Minus
arm_4 581344..581446 519..621 100 -> Minus
arm_4 580877..580926 798..849 92 -> Minus
arm_4 580975..581037 735..797 100 -> Minus
arm_4 581097..581209 622..734 100 -> Minus

BO04476.5prime Sequence

854 bp (719 high quality bases) assembled on 2005-11-29

> BO04476.5prime
GAAGTTATCAGTCGACATGTCCGATTTGGGAAGTGGAGATGATGGCATCT
CAGGATCAAAATATAATGTTGCAAATATGGAGGGTTCCTCAAGTAGGAAC
GACTTCGATTCTTCTGCTAAAGGAGGAAGCGGCGTCGAACAGGAATTGGC
TACGAAAATGTTGCAAATACAATCTAAACGATTTTATTTGGATGTAAAAC
AAAATAGAAGAGGCCGTTTTATAAAGGTTGCTGAGATTGGCGCTGATGGT
AGACGAAGTCAAATTTACTTGGCTCTTTCAACTGCAGCCGAATTTCGTGA
CCATTTATCCTCATTTAGCGATTACTACGCTTCTCTAGGTCCACCAAACA
CCGACAATTTGCCGGAAGATGGTAAACTTAAATCTGAAATGATGATAAAA
GATTACAGAAGGTATTACTTGGACTTAAAAGAAAATGCGCGTGGCCGATT
TTTACGGGTATCGCAAACAATAACAAGAGGGGGGCCTAGATCTCAAATCG
CTTTACCGGCTCAAGGCATGATCGAGTTTCGTGACGCTCTTACAGATTTG
TTAGAAGAGTTTGGAGCTAATGATGGAGGGTTTAAAGGAGATTTACCGGA
AGAGCGACACATGAAGGTGGATAATAAAAATTTTTATTTTGATATCGGAC
AAAATAATCGAGGAGTGTACATGCGGATAAGCGAAGTGAAAAATAACTTC
CGGACTTCGATAACTATTCCAGAGAAATGTTGGATTCGCTTTCGAGATAT
TTTTAATGATTATTGCGAGAAAATGAAAAAATCGTCCGACTCAATTACTG
CCGAAATTAACTTACCTACATCTTTCAATAGTCTTAAAGCAAGCTTTCTA
GACC

BO04476.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:06:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG1507-PA 825 Pur-alpha-RA 1..822 17..838 4060 99.7 Plus
CG1507-PC 825 Pur-alpha-RC 1..822 17..838 4060 99.7 Plus
CG1507-PB 828 Pur-alpha-RB 1..563 17..579 2815 100 Plus
CG1507-PD 783 Pur-alpha-RD 22..518 83..579 2485 100 Plus
CG1507-PB 828 Pur-alpha-RB 566..825 579..838 1250 99.2 Plus
CG1507-PD 783 Pur-alpha-RD 521..780 579..838 1250 99.2 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:16:29
Subject Length Description Subject Range Query Range Score Percent Strand
Pur-alpha-RE 2719 CG1507-RE 394..1215 17..838 4080 99.8 Plus
Pur-alpha-RC 1238 CG1507-RC 239..1060 17..838 4080 99.8 Plus
Pur-alpha-RA 1313 CG1507-RA 314..1135 17..838 4080 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 15:16:25
Subject Length Description Subject Range Query Range Score Percent Strand
4 1348131 4 565601..565753 686..838 735 98.7 Plus
4 1348131 4 564540..564664 457..581 625 100 Plus
4 1348131 4 564359..564482 337..460 620 100 Plus
4 1348131 4 560469..560583 121..235 575 100 Plus
4 1348131 4 565409..565517 579..687 545 100 Plus
4 1348131 4 560716..560822 234..340 535 100 Plus
4 1348131 4 560349..560412 60..123 320 100 Plus
4 1348131 4 560258..560300 17..59 215 100 Plus
Blast to na_te.dros performed on 2015-02-13 15:16:27 has no hits.

BO04476.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:03:53 Download gff for BO04476.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1507-PC 1..825 17..842 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:17:24 Download gff for BO04476.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1507-PC 1..825 17..842 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:01:50 Download gff for BO04476.5prime
Subject Subject Range Query Range Percent Splice Strand
Pur-alpha-RA 307..1138 8..842 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:47:54 Download gff for BO04476.5prime
Subject Subject Range Query Range Percent Splice Strand
Pur-alpha-RA 307..1138 8..842 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 16:47:54 Download gff for BO04476.5prime
Subject Subject Range Query Range Percent Splice Strand
4 560251..560300 8..59 92 -> Plus
4 560349..560411 60..122 100 -> Plus
4 560471..560583 123..235 100 -> Plus
4 560718..560820 236..338 100 -> Plus
4 564361..564479 339..457 100 -> Plus
4 564541..564662 458..579 100 -> Plus
4 565410..565515 580..685 100 -> Plus
4 565601..565752 686..837 98 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:01:50 Download gff for BO04476.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_4 580877..580926 8..59 92 -> Plus
arm_4 580975..581037 60..122 100 -> Plus
arm_4 581097..581209 123..235 100 -> Plus
arm_4 581344..581446 236..338 100 -> Plus
arm_4 584987..585105 339..457 100 -> Plus
arm_4 585167..585288 458..579 100 -> Plus
arm_4 586036..586141 580..685 100 -> Plus
arm_4 586227..586378 686..837 98 -> Plus

BO04476.complete Sequence

856 bp (856 high quality bases) assembled on 2005-09-08

GenBank Submission: FJ629779

> BO04476.complete
GAAGTTATCAGTCGACATGTCCGATTTGGGAAGTGGAGATGATGGCATCT
CAGGATCAAAATATAATGTTGCAAATATGGAGGGTTCCTCAAGTAGGAAC
GACTTCGATTCTTCTGCTAAAGGAGGAAGCGGCGTCGAACAGGAATTGGC
TACGAAAATGTTGCAAATACAATCTAAACGATTTTATTTGGATGTAAAAC
AAAATAGAAGAGGCCGTTTTATAAAGGTTGCTGAGATTGGCGCTGATGGT
AGACGAAGTCAAATTTACTTGGCTCTTTCAACTGCAGCCGAATTTCGTGA
CCATTTATCCTCATTTAGCGATTACTACGCTTCTCTAGGTCCACCAAACA
CCGACAATTTGCCGGAAGATGGTAAACTTAAATCTGAAATGATGATAAAA
GATTACAGAAGGTATTACTTGGACTTAAAAGAAAATGCGCGTGGCCGATT
TTTACGGGTATCGCAAACAATAACAAGAGGGGGGCCTAGATCTCAAATCG
CTTTACCGGCTCAAGGCATGATCGAGTTTCGTGACGCTCTTACAGATTTG
TTAGAAGAGTTTGGAGCTAATGATGGAGGGTTTAAAGGAGATTTACCGGA
AGAGCGACACATGAAGGTGGATAATAAAAATTTTTATTTTGATATCGGAC
AAAATAATCGAGGAGTGTACATGCGGATAAGCGAAGTGAAAAATAACTTC
CGGACTTCGATAACTATTCCAGAGAAATGTTGGATTCGCTTTCGAGATAT
TTTTAATGATTATTGCGAGAAAATGAAAAAATCGTCCGACTCAATTACTG
CCGAAATTAACTTACCTACATCTTCAAATAGTCTTAAAGCAAGCTTTCTA
GACCAT

BO04476.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:47:13
Subject Length Description Subject Range Query Range Score Percent Strand
Pur-alpha-RE 825 CG1507-PE 1..822 17..838 4110 100 Plus
Pur-alpha-RC 825 CG1507-PC 1..822 17..838 4110 100 Plus
Pur-alpha-RA 825 CG1507-PA 1..822 17..838 4110 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:47:14
Subject Length Description Subject Range Query Range Score Percent Strand
Pur-alpha-RE 2719 CG1507-RE 394..1215 17..838 4110 100 Plus
Pur-alpha-RC 1238 CG1507-RC 239..1060 17..838 4110 100 Plus
Pur-alpha-RA 1313 CG1507-RA 314..1135 17..838 4110 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 12:47:11
Subject Length Description Subject Range Query Range Score Percent Strand
4 1348131 4 565601..565753 686..838 765 100 Plus
4 1348131 4 564540..564664 457..581 625 100 Plus
4 1348131 4 564359..564482 337..460 620 100 Plus
4 1348131 4 560469..560583 121..235 575 100 Plus
4 1348131 4 565409..565517 579..687 545 100 Plus
4 1348131 4 560716..560822 234..340 535 100 Plus
4 1348131 4 560349..560412 60..123 320 100 Plus
4 1348131 4 560258..560300 17..59 215 100 Plus
Blast to na_te.dros performed on 2014-11-27 12:47:13 has no hits.

BO04476.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:02:10 Download gff for BO04476.complete
Subject Subject Range Query Range Percent Splice Strand
Pur-alpha-RC 1..825 17..842 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:34:35 Download gff for BO04476.complete
Subject Subject Range Query Range Percent Splice Strand
Pur-alpha-RC 298..1129 8..842 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:45:56 Download gff for BO04476.complete
Subject Subject Range Query Range Percent Splice Strand
Pur-alpha-RA 314..1135 17..840 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:02:10 Download gff for BO04476.complete
Subject Subject Range Query Range Percent Splice Strand
Pur-alpha-RC 298..1129 8..842 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:04:34 Download gff for BO04476.complete
Subject Subject Range Query Range Percent Splice Strand
Pur-alpha-RA 314..1135 17..840 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:04:34 Download gff for BO04476.complete
Subject Subject Range Query Range Percent Splice Strand
4 560258..560300 17..59 100 -> Plus
4 560349..560411 60..122 100 -> Plus
4 560471..560583 123..235 100 -> Plus
4 560718..560820 236..338 100 -> Plus
4 564361..564479 339..457 100 -> Plus
4 564541..564662 458..579 100 -> Plus
4 565410..565515 580..685 100 -> Plus
4 565601..565753 686..840 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:45:56 Download gff for BO04476.complete
Subject Subject Range Query Range Percent Splice Strand
arm_4 580884..580926 17..59 100 -> Plus
arm_4 580975..581037 60..122 100 -> Plus
arm_4 581097..581209 123..235 100 -> Plus
arm_4 581344..581446 236..338 100 -> Plus
arm_4 584987..585105 339..457 100 -> Plus
arm_4 585167..585288 458..579 100 -> Plus
arm_4 586036..586141 580..685 100 -> Plus
arm_4 586227..586379 686..840 98   Plus

BO04476.pep Sequence

Translation from 16 to 856

> BO04476.pep
MSDLGSGDDGISGSKYNVANMEGSSSRNDFDSSAKGGSGVEQELATKMLQ
IQSKRFYLDVKQNRRGRFIKVAEIGADGRRSQIYLALSTAAEFRDHLSSF
SDYYASLGPPNTDNLPEDGKLKSEMMIKDYRRYYLDLKENARGRFLRVSQ
TITRGGPRSQIALPAQGMIEFRDALTDLLEEFGANDGGFKGDLPEERHMK
VDNKNFYFDIGQNNRGVYMRISEVKNNFRTSITIPEKCWIRFRDIFNDYC
EKMKKSSDSITAEINLPTSSNSLKASFLDH

BO04476.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:17:50
Subject Length Description Subject Range Query Range Score Percent Strand
Pur-alpha-PE 274 CG1507-PE 1..274 1..274 1416 100 Plus
Pur-alpha-PC 274 CG1507-PC 1..274 1..274 1416 100 Plus
Pur-alpha-PA 274 CG1507-PA 1..274 1..274 1416 100 Plus
Pur-alpha-PF 275 CG1507-PF 1..275 1..274 1404 99.6 Plus
Pur-alpha-PB 275 CG1507-PB 1..275 1..274 1404 99.6 Plus