Clone Sequence Records
BO04476.3prime Sequence
854 bp (844 high quality bases) assembled on 2005-12-01
> BO04476.3prime
ATGGTCTAGAAAGCTTGCTTTAAGACTATTTGAAGATGTAGGTAAGTTAA
TTTCGGCAGTAATTGAGTCGGACGATTTTTTCATTTTCTCGCAATAATCA
TTAAAAATATCTCGAAAGCGAATCCAACATTTCTCTGGAATAGTTATCGA
AGTCCGGAAGTTATTTTTCACTTCGCTTATCCGCATGTACACTCCTCGAT
TATTTTGTCCGATATCAAAATAAAAATTTTTATTATCCACCTTCATGTGT
CGCTCTTCCGGTAAATCTCCTTTAAACCCTCCATCATTAGCTCCAAACTC
TTCTAACAAATCTGTAAGAGCGTCACGAAACTCGATCATGCCTTGAGCCG
GTAAAGCGATTTGAGATCTAGGCCCCCCTCTTGTTATTGTTTGCGATACC
CGTAAAAATCGGCCACGCGCATTTTCTTTTAAGTCCAAGTAATACCTTCT
GTAATCTTTTATCATCATTTCAGATTTAAGTTTACCATCTTCCGGCAAAT
TGTCGGTGTTTGGTGGACCTAGAGAAGCGTAGTAATCGCTAAATGAGGAT
AAATGGTCACGAAATTCGGCTGCAGTTGAAAGAGCCAAGTAAATTTGACT
TCGTCTACCATCAGCGCCAATCTCAGCAACCTTTATAAAACGGCCTCTTC
TATTTTGTTTTACATCCAAATAAAATCGTTTAGATTGTATTTGCAACATT
TTCGTAGCCAATTCCTGTTCGACGCCGCTTCCTCCTTTAGCAGAAGAATC
GAAGTCGTTCCTACTTGAGGAACCCTCCATATTTGCAACATTATATTTTG
ATCCTGAGATGCCATCATCTCCACTTCCCAAATCGGACATGTCGACTGAT
AACT
BO04476.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:06:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1507-PA | 825 | Pur-alpha-RA | 1..822 | 840..19 | 4110 | 100 | Minus |
CG1507-PC | 825 | Pur-alpha-RC | 1..822 | 840..19 | 4110 | 100 | Minus |
CG1507-PB | 828 | Pur-alpha-RB | 1..563 | 840..278 | 2815 | 100 | Minus |
CG1507-PD | 783 | Pur-alpha-RD | 22..518 | 774..278 | 2485 | 100 | Minus |
CG1507-PB | 828 | Pur-alpha-RB | 566..825 | 278..19 | 1300 | 100 | Minus |
CG1507-PD | 783 | Pur-alpha-RD | 521..780 | 278..19 | 1300 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:07:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pur-alpha-RE | 2719 | CG1507-RE | 394..1215 | 840..19 | 4110 | 100 | Minus |
Pur-alpha-RC | 1238 | CG1507-RC | 239..1060 | 840..19 | 4110 | 100 | Minus |
Pur-alpha-RA | 1313 | CG1507-RA | 314..1135 | 840..19 | 4110 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:07:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
4 | 1348131 | 4 | 565601..565753 | 171..19 | 765 | 100 | Minus |
4 | 1348131 | 4 | 564540..564664 | 400..276 | 625 | 100 | Minus |
4 | 1348131 | 4 | 564359..564482 | 520..397 | 620 | 100 | Minus |
4 | 1348131 | 4 | 560469..560583 | 736..622 | 575 | 100 | Minus |
4 | 1348131 | 4 | 565409..565517 | 278..170 | 545 | 100 | Minus |
4 | 1348131 | 4 | 560716..560822 | 623..517 | 535 | 100 | Minus |
4 | 1348131 | 4 | 560349..560412 | 797..734 | 320 | 100 | Minus |
4 | 1348131 | 4 | 560258..560300 | 840..798 | 215 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 01:07:35 has no hits.
BO04476.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:03:52 Download gff for
BO04476.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1507-PC | 1..825 | 15..840 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:17:22 Download gff for
BO04476.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1507-PC | 1..825 | 15..840 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 11:38:19 Download gff for
BO04476.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pur-alpha-RA | 307..1138 | 15..849 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:02:19 Download gff for
BO04476.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pur-alpha-RA | 307..1138 | 15..849 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 05:02:19 Download gff for
BO04476.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
4 | 565410..565515 | 172..277 | 100 | -> | Minus |
4 | 565601..565752 | 20..171 | 100 | -> | Minus |
4 | 560251..560300 | 798..849 | 92 | -> | Minus |
4 | 560349..560411 | 735..797 | 100 | -> | Minus |
4 | 560471..560583 | 622..734 | 100 | -> | Minus |
4 | 560718..560820 | 519..621 | 100 | -> | Minus |
4 | 564361..564479 | 400..518 | 100 | -> | Minus |
4 | 564541..564662 | 278..399 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 11:38:19 Download gff for
BO04476.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_4 | 584987..585105 | 400..518 | 100 | -> | Minus |
arm_4 | 585167..585288 | 278..399 | 100 | -> | Minus |
arm_4 | 586036..586141 | 172..277 | 100 | -> | Minus |
arm_4 | 586227..586378 | 20..171 | 100 | -> | Minus |
arm_4 | 581344..581446 | 519..621 | 100 | -> | Minus |
arm_4 | 580877..580926 | 798..849 | 92 | -> | Minus |
arm_4 | 580975..581037 | 735..797 | 100 | -> | Minus |
arm_4 | 581097..581209 | 622..734 | 100 | -> | Minus |
BO04476.5prime Sequence
854 bp (719 high quality bases) assembled on 2005-11-29
> BO04476.5prime
GAAGTTATCAGTCGACATGTCCGATTTGGGAAGTGGAGATGATGGCATCT
CAGGATCAAAATATAATGTTGCAAATATGGAGGGTTCCTCAAGTAGGAAC
GACTTCGATTCTTCTGCTAAAGGAGGAAGCGGCGTCGAACAGGAATTGGC
TACGAAAATGTTGCAAATACAATCTAAACGATTTTATTTGGATGTAAAAC
AAAATAGAAGAGGCCGTTTTATAAAGGTTGCTGAGATTGGCGCTGATGGT
AGACGAAGTCAAATTTACTTGGCTCTTTCAACTGCAGCCGAATTTCGTGA
CCATTTATCCTCATTTAGCGATTACTACGCTTCTCTAGGTCCACCAAACA
CCGACAATTTGCCGGAAGATGGTAAACTTAAATCTGAAATGATGATAAAA
GATTACAGAAGGTATTACTTGGACTTAAAAGAAAATGCGCGTGGCCGATT
TTTACGGGTATCGCAAACAATAACAAGAGGGGGGCCTAGATCTCAAATCG
CTTTACCGGCTCAAGGCATGATCGAGTTTCGTGACGCTCTTACAGATTTG
TTAGAAGAGTTTGGAGCTAATGATGGAGGGTTTAAAGGAGATTTACCGGA
AGAGCGACACATGAAGGTGGATAATAAAAATTTTTATTTTGATATCGGAC
AAAATAATCGAGGAGTGTACATGCGGATAAGCGAAGTGAAAAATAACTTC
CGGACTTCGATAACTATTCCAGAGAAATGTTGGATTCGCTTTCGAGATAT
TTTTAATGATTATTGCGAGAAAATGAAAAAATCGTCCGACTCAATTACTG
CCGAAATTAACTTACCTACATCTTTCAATAGTCTTAAAGCAAGCTTTCTA
GACC
BO04476.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:06:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1507-PA | 825 | Pur-alpha-RA | 1..822 | 17..838 | 4060 | 99.7 | Plus |
CG1507-PC | 825 | Pur-alpha-RC | 1..822 | 17..838 | 4060 | 99.7 | Plus |
CG1507-PB | 828 | Pur-alpha-RB | 1..563 | 17..579 | 2815 | 100 | Plus |
CG1507-PD | 783 | Pur-alpha-RD | 22..518 | 83..579 | 2485 | 100 | Plus |
CG1507-PB | 828 | Pur-alpha-RB | 566..825 | 579..838 | 1250 | 99.2 | Plus |
CG1507-PD | 783 | Pur-alpha-RD | 521..780 | 579..838 | 1250 | 99.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:16:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pur-alpha-RE | 2719 | CG1507-RE | 394..1215 | 17..838 | 4080 | 99.8 | Plus |
Pur-alpha-RC | 1238 | CG1507-RC | 239..1060 | 17..838 | 4080 | 99.8 | Plus |
Pur-alpha-RA | 1313 | CG1507-RA | 314..1135 | 17..838 | 4080 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 15:16:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
4 | 1348131 | 4 | 565601..565753 | 686..838 | 735 | 98.7 | Plus |
4 | 1348131 | 4 | 564540..564664 | 457..581 | 625 | 100 | Plus |
4 | 1348131 | 4 | 564359..564482 | 337..460 | 620 | 100 | Plus |
4 | 1348131 | 4 | 560469..560583 | 121..235 | 575 | 100 | Plus |
4 | 1348131 | 4 | 565409..565517 | 579..687 | 545 | 100 | Plus |
4 | 1348131 | 4 | 560716..560822 | 234..340 | 535 | 100 | Plus |
4 | 1348131 | 4 | 560349..560412 | 60..123 | 320 | 100 | Plus |
4 | 1348131 | 4 | 560258..560300 | 17..59 | 215 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 15:16:27 has no hits.
BO04476.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:03:53 Download gff for
BO04476.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1507-PC | 1..825 | 17..842 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:17:24 Download gff for
BO04476.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1507-PC | 1..825 | 17..842 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:01:50 Download gff for
BO04476.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pur-alpha-RA | 307..1138 | 8..842 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:47:54 Download gff for
BO04476.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pur-alpha-RA | 307..1138 | 8..842 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 16:47:54 Download gff for
BO04476.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
4 | 560251..560300 | 8..59 | 92 | -> | Plus |
4 | 560349..560411 | 60..122 | 100 | -> | Plus |
4 | 560471..560583 | 123..235 | 100 | -> | Plus |
4 | 560718..560820 | 236..338 | 100 | -> | Plus |
4 | 564361..564479 | 339..457 | 100 | -> | Plus |
4 | 564541..564662 | 458..579 | 100 | -> | Plus |
4 | 565410..565515 | 580..685 | 100 | -> | Plus |
4 | 565601..565752 | 686..837 | 98 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:01:50 Download gff for
BO04476.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_4 | 580877..580926 | 8..59 | 92 | -> | Plus |
arm_4 | 580975..581037 | 60..122 | 100 | -> | Plus |
arm_4 | 581097..581209 | 123..235 | 100 | -> | Plus |
arm_4 | 581344..581446 | 236..338 | 100 | -> | Plus |
arm_4 | 584987..585105 | 339..457 | 100 | -> | Plus |
arm_4 | 585167..585288 | 458..579 | 100 | -> | Plus |
arm_4 | 586036..586141 | 580..685 | 100 | -> | Plus |
arm_4 | 586227..586378 | 686..837 | 98 | -> | Plus |
BO04476.complete Sequence
856 bp (856 high quality bases) assembled on 2005-09-08
GenBank Submission: FJ629779
> BO04476.complete
GAAGTTATCAGTCGACATGTCCGATTTGGGAAGTGGAGATGATGGCATCT
CAGGATCAAAATATAATGTTGCAAATATGGAGGGTTCCTCAAGTAGGAAC
GACTTCGATTCTTCTGCTAAAGGAGGAAGCGGCGTCGAACAGGAATTGGC
TACGAAAATGTTGCAAATACAATCTAAACGATTTTATTTGGATGTAAAAC
AAAATAGAAGAGGCCGTTTTATAAAGGTTGCTGAGATTGGCGCTGATGGT
AGACGAAGTCAAATTTACTTGGCTCTTTCAACTGCAGCCGAATTTCGTGA
CCATTTATCCTCATTTAGCGATTACTACGCTTCTCTAGGTCCACCAAACA
CCGACAATTTGCCGGAAGATGGTAAACTTAAATCTGAAATGATGATAAAA
GATTACAGAAGGTATTACTTGGACTTAAAAGAAAATGCGCGTGGCCGATT
TTTACGGGTATCGCAAACAATAACAAGAGGGGGGCCTAGATCTCAAATCG
CTTTACCGGCTCAAGGCATGATCGAGTTTCGTGACGCTCTTACAGATTTG
TTAGAAGAGTTTGGAGCTAATGATGGAGGGTTTAAAGGAGATTTACCGGA
AGAGCGACACATGAAGGTGGATAATAAAAATTTTTATTTTGATATCGGAC
AAAATAATCGAGGAGTGTACATGCGGATAAGCGAAGTGAAAAATAACTTC
CGGACTTCGATAACTATTCCAGAGAAATGTTGGATTCGCTTTCGAGATAT
TTTTAATGATTATTGCGAGAAAATGAAAAAATCGTCCGACTCAATTACTG
CCGAAATTAACTTACCTACATCTTCAAATAGTCTTAAAGCAAGCTTTCTA
GACCAT
BO04476.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:47:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pur-alpha-RE | 825 | CG1507-PE | 1..822 | 17..838 | 4110 | 100 | Plus |
Pur-alpha-RC | 825 | CG1507-PC | 1..822 | 17..838 | 4110 | 100 | Plus |
Pur-alpha-RA | 825 | CG1507-PA | 1..822 | 17..838 | 4110 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:47:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pur-alpha-RE | 2719 | CG1507-RE | 394..1215 | 17..838 | 4110 | 100 | Plus |
Pur-alpha-RC | 1238 | CG1507-RC | 239..1060 | 17..838 | 4110 | 100 | Plus |
Pur-alpha-RA | 1313 | CG1507-RA | 314..1135 | 17..838 | 4110 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 12:47:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
4 | 1348131 | 4 | 565601..565753 | 686..838 | 765 | 100 | Plus |
4 | 1348131 | 4 | 564540..564664 | 457..581 | 625 | 100 | Plus |
4 | 1348131 | 4 | 564359..564482 | 337..460 | 620 | 100 | Plus |
4 | 1348131 | 4 | 560469..560583 | 121..235 | 575 | 100 | Plus |
4 | 1348131 | 4 | 565409..565517 | 579..687 | 545 | 100 | Plus |
4 | 1348131 | 4 | 560716..560822 | 234..340 | 535 | 100 | Plus |
4 | 1348131 | 4 | 560349..560412 | 60..123 | 320 | 100 | Plus |
4 | 1348131 | 4 | 560258..560300 | 17..59 | 215 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 12:47:13 has no hits.
BO04476.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:02:10 Download gff for
BO04476.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pur-alpha-RC | 1..825 | 17..842 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:34:35 Download gff for
BO04476.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pur-alpha-RC | 298..1129 | 8..842 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:45:56 Download gff for
BO04476.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pur-alpha-RA | 314..1135 | 17..840 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:02:10 Download gff for
BO04476.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pur-alpha-RC | 298..1129 | 8..842 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:04:34 Download gff for
BO04476.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pur-alpha-RA | 314..1135 | 17..840 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:04:34 Download gff for
BO04476.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
4 | 560258..560300 | 17..59 | 100 | -> | Plus |
4 | 560349..560411 | 60..122 | 100 | -> | Plus |
4 | 560471..560583 | 123..235 | 100 | -> | Plus |
4 | 560718..560820 | 236..338 | 100 | -> | Plus |
4 | 564361..564479 | 339..457 | 100 | -> | Plus |
4 | 564541..564662 | 458..579 | 100 | -> | Plus |
4 | 565410..565515 | 580..685 | 100 | -> | Plus |
4 | 565601..565753 | 686..840 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:45:56 Download gff for
BO04476.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_4 | 580884..580926 | 17..59 | 100 | -> | Plus |
arm_4 | 580975..581037 | 60..122 | 100 | -> | Plus |
arm_4 | 581097..581209 | 123..235 | 100 | -> | Plus |
arm_4 | 581344..581446 | 236..338 | 100 | -> | Plus |
arm_4 | 584987..585105 | 339..457 | 100 | -> | Plus |
arm_4 | 585167..585288 | 458..579 | 100 | -> | Plus |
arm_4 | 586036..586141 | 580..685 | 100 | -> | Plus |
arm_4 | 586227..586379 | 686..840 | 98 | | Plus |
BO04476.pep Sequence
Translation from 16 to 856
> BO04476.pep
MSDLGSGDDGISGSKYNVANMEGSSSRNDFDSSAKGGSGVEQELATKMLQ
IQSKRFYLDVKQNRRGRFIKVAEIGADGRRSQIYLALSTAAEFRDHLSSF
SDYYASLGPPNTDNLPEDGKLKSEMMIKDYRRYYLDLKENARGRFLRVSQ
TITRGGPRSQIALPAQGMIEFRDALTDLLEEFGANDGGFKGDLPEERHMK
VDNKNFYFDIGQNNRGVYMRISEVKNNFRTSITIPEKCWIRFRDIFNDYC
EKMKKSSDSITAEINLPTSSNSLKASFLDH
BO04476.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:17:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pur-alpha-PE | 274 | CG1507-PE | 1..274 | 1..274 | 1416 | 100 | Plus |
Pur-alpha-PC | 274 | CG1507-PC | 1..274 | 1..274 | 1416 | 100 | Plus |
Pur-alpha-PA | 274 | CG1507-PA | 1..274 | 1..274 | 1416 | 100 | Plus |
Pur-alpha-PF | 275 | CG1507-PF | 1..275 | 1..274 | 1404 | 99.6 | Plus |
Pur-alpha-PB | 275 | CG1507-PB | 1..275 | 1..274 | 1404 | 99.6 | Plus |