Clone Sequence Records
BO04477.3prime Sequence
903 bp (740 high quality bases) assembled on 2005-12-01
> BO04477.3prime
ATGGTCTAGAAAGCTTGCTACTGCTGCCGCAGCGAATCCTTTCCCCATAG
TGGCCTTGCTAATTACTTTGGTATTGGCTGCGATGGAATAATCCACCTGT
GTTTTCCCATTCTGATTTCTTACGAGCTCCGTCAGCTGTGGAAGCGTATC
TTTAGCCACACTCTCACGAATTTTTTCAAAGAAAGCCATGTAGTGATAAA
GGTTGTGAACCATCAGTAAGATGGGACCTAATAGTTCGTTGGTCTTGTAC
AGGTGGTGAAGGTAGGCACGCGTGTGTTTCTGGCAAGTCAAGCAATTGCA
GTTGCTCAGCGGCGGAGTAAAATCCTCCTTGATAGCTTCGTCGGTTATGT
CCAAGAAAGGCACATGCTCCACTGCATCCTGCACAAAACTAAATGACAAA
GCCTTGAAGTTTAGAGAAGCACAATATGCGTAGGAAGTGTCAAACACATC
GATTCCTTGTTGGATTAGTTCCAGAACGGTTAGGGGCGTGTATGCACCCG
GCAATATCTTAGGCTTGTCCTCCTCCAGCTGCTTGACGCAGTGCTCTACT
ATTGGCAGTAGTTTGGAAGTGTCCAAAGTGGTCGCTGATAGACCATTCGC
GTGGAAACCCTCGAAGATGTAACCTCCATAGCTTCCCGCTGGCTGTTCCC
GGGCATGTTTAATGGACTGCGTCCGAGCAAAGGTGTTGTATCCGCCCACA
ATGGGAGCTAGCAGAGTGGAATTCACCTTGCCCCGGTGCTCGTAGATGTA
TTGCATAAACTTCTCTGTCCTGTCAACCGATTTCTGAACCCGCTTTTTGG
CACTCTCTAAATTTGTGTCCGCATCGCAGAGTCCCTCATACATGTCCGGC
TTGAAACTTGCTACTATTTCCATGTAGCGCTCCCAAAAGAGCGATTCCTT
GCC
BO04477.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:06:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3434-PA | 1257 | CG3434-RA | 370..1254 | 903..19 | 4350 | 99.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:46:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3434-RA | 1372 | CG3434-RA | 452..1336 | 903..19 | 4380 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:46:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 9459654..9460348 | 209..903 | 3430 | 99.6 | Plus |
| 3L | 28110227 | 3L | 9459405..9459594 | 19..208 | 950 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 23:46:44 has no hits.
BO04477.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:03:54 Download gff for
BO04477.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3434-PA | 370..1257 | 16..903 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:17:25 Download gff for
BO04477.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3434-PA | 370..1257 | 16..903 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:36:29 Download gff for
BO04477.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3434-RA | 452..1336 | 19..903 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:51:42 Download gff for
BO04477.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3434-RA | 452..1336 | 19..903 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:51:42 Download gff for
BO04477.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 9459405..9459594 | 19..208 | 100 | <- | Plus |
| 3L | 9459654..9460348 | 209..903 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:36:29 Download gff for
BO04477.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 9452505..9452694 | 19..208 | 100 | <- | Plus |
| arm_3L | 9452754..9453448 | 209..903 | 99 | | Plus |
BO04477.5prime Sequence
762 bp (705 high quality bases) assembled on 2005-11-29
> BO04477.5prime
GAAGTTATCAGTCGACATGAAATTTGCAATCGAGAGTATTAGCAAGAATT
CTGGTCGACTAGGTCAACTGCGAATCAGGGATGGAGGACCCGAGTTCAAG
ACTCCCCTTCTTTTGCAGACGACTAAGGGCGGAAGCATTCCGTGGCTGAG
TGCGGATGTTTTCGAGACTCATGTCAGCCGGAAGCCACAGGTGCTCCAAT
TCACACTGTCCACAATGGAACAAATGACCGAGGCACTTACGCATTGGAAC
AGTGGTGGGGGTCGCGGACTGAGCGACTACGTAGGACTACCAGGACATCT
AAATATTCTCCTGCTACGAGATCCCTGTGAAACAACGCCTTCCGGAGGTA
ACGACAGGGATATACTGCCGTTGTTTACGAGAAGGGGCAAGGAATCGCTC
TCTTCGGAGCGCTACATGGAAATAGTAGCAAGTTTCAAGCCGGACATGTA
TGAGGGACTCTGCGATGCGGACACAAATTTAGAGAGTGCCAAGAAGCGGG
TTCAGAAATCGGTTGACAGGACAGAGAAGTTTATGCAATACATCTACGAG
CACCGGGGCAAGGTGAATTCCACTCTGCTAGCTCCCATTGTGGGCGGATA
CAACACCTTTGCTCGGACGCAGTCCATTAAACATGCCCGGGAACAGCCAG
CGGGAAGCTATGGAGGTTACATCTTCGAGGGTTTCCACGCGAATGGTCTA
TCAGCGACCACTTTGGACACTTCCAAACTACTGCCAATAGTAGAGCACTG
CGTTCAGCAGCT
BO04477.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:06:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3434-PA | 1257 | CG3434-RA | 1..737 | 17..753 | 3685 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:22:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3434-RA | 1372 | CG3434-RA | 83..828 | 17..762 | 3700 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:22:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 9459972..9460717 | 762..17 | 3700 | 99.7 | Minus |
Blast to na_te.dros performed on 2015-02-12 06:22:24 has no hits.
BO04477.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:03:55 Download gff for
BO04477.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3434-PA | 1..746 | 17..762 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:17:26 Download gff for
BO04477.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3434-PA | 1..746 | 17..762 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:26:32 Download gff for
BO04477.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3434-RA | 76..828 | 10..762 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:09:36 Download gff for
BO04477.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3434-RA | 76..828 | 10..762 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:09:36 Download gff for
BO04477.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 9459972..9460724 | 10..762 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:26:32 Download gff for
BO04477.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 9453072..9453824 | 10..762 | 99 | | Minus |
BO04477.complete Sequence
1288 bp (1288 high quality bases) assembled on 2005-10-17
GenBank Submission: FJ629780
> BO04477.complete
GAAGTTATCAGTCGACATGAAATTTGCAATCGAGAGTATTAGCAAGAATT
CTGGTCGACTAGGTCAACTGCGAATCAGGGATGGAGGACCCGAGTTCAAG
ACTCCCCTTCTTTTGCAGACGACTAAGGGCGGAAGCATTCCGTGGCTGAG
TGCGGATGTTTTCGAGACTCATGTCAGCCGGAAGCCACAGGTGCTCCAAT
TCACACTGTCCACAATGGAACAAATGACCGAGGCACTTACGCATTGGAAC
AGTGGTGGGGGTCGCGGACTGAGCGACTACGTAGGACTACCAGGACATCT
AAATATTCTCCTGCTACGAGATCCCTGTGAAACAACGCCTTCCGGAGGTA
ACGACAGGGATATACTGCCGTTGTTTACGAGAAGGGGCAAGGAATCGCTC
TCTTCGGAGCGCTACATGGAAATAGTAGCAAGTTTCAAGCCGGACATGTA
TGAGGGACTCTGCGATGCGGACACAAATTTAGAGAGTGCCAAGAAGCGGG
TTCAGAAATCGGTTGACAGGACAGAGAAGTTTATGCAATACATCTACGAG
CACCGGGGCAAGGTGAATTCCACTCTGCTAGCTCCCATTGTGGGCGGATA
CAACACCTTTGCTCGGACGCAGTCCATTAAACATGCCCGGGAACAGCCAG
CGGGAAGCTATGGAGGTTACATCTTCGAGGGTTTCCACGCGAATGGTCTA
TCAGCGACCACTTTGGACACTTCCAAACTACTGCCAATAGTAGAGCACTG
CGTCAAGCAGCTGGAGGAGGACAAGCCTAAGATATTGCCGGGTGCATACA
CGCCCCTAACCGTTCTGGAACTAATCCAACAAGGAATCGATGTGTTTGAC
ACTTCCTACGCATATTGTGCTTCTCTAAACTTCAAGGCTTTGTCATTTAG
TTTTGTGCAGGATGCAGTGGAGCATGTGCCTTTCTTGGACATAACCGACG
AAGCTATCAAGGAGGATTTTACTCCGCCGCTGAGCAACTGCAATTGCTTG
ACTTGCCAGAAACACACGCGTGCCTACCTTCACCACCTGTACAAGACCAA
CGAACTATTAGGTCCCATCTTACTGATGGTTCACAACCTTTATCACTACA
TGGCTTTCTTTGAAAAAATTCGTGAGAGTGTGGCTAAAGATACGCTTCCA
CAGCTGACGGAGCTCGTAAGAAATCAGAATGGGAAAACACAGGTGGATTA
TTCCATCGCAGCCAATACCAAAGTAATTAGCAAGGCCACTATGGGGAAAG
GATTCGCTGCGGCAGCAGTAGCAAGCTTTCTAGACCAT
BO04477.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:52:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3434-RA | 1257 | CG3434-PA | 1..1254 | 17..1270 | 6270 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:52:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3434-RA | 1372 | CG3434-RA | 83..1336 | 17..1270 | 6270 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:52:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 9459654..9460717 | 1080..17 | 5320 | 100 | Minus |
| 3L | 28110227 | 3L | 9459405..9459594 | 1270..1081 | 950 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:52:42 has no hits.
BO04477.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:31:47 Download gff for
BO04477.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3434-RA | 1..1257 | 17..1273 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:58:42 Download gff for
BO04477.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3434-RA | 51..1311 | 10..1270 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:34:16 Download gff for
BO04477.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3434-RA | 83..1336 | 17..1272 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:31:47 Download gff for
BO04477.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3434-RA | 51..1311 | 10..1270 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:54:43 Download gff for
BO04477.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3434-RA | 83..1336 | 17..1272 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:54:43 Download gff for
BO04477.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 9459401..9459594 | 1081..1272 | 98 | <- | Minus |
| 3L | 9459654..9460717 | 17..1080 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:34:16 Download gff for
BO04477.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 9452501..9452694 | 1081..1272 | 98 | <- | Minus |
| arm_3L | 9452754..9453817 | 17..1080 | 100 | | Minus |
BO04477.pep Sequence
Translation from 16 to 1288
> BO04477.pep
MKFAIESISKNSGRLGQLRIRDGGPEFKTPLLLQTTKGGSIPWLSADVFE
THVSRKPQVLQFTLSTMEQMTEALTHWNSGGGRGLSDYVGLPGHLNILLL
RDPCETTPSGGNDRDILPLFTRRGKESLSSERYMEIVASFKPDMYEGLCD
ADTNLESAKKRVQKSVDRTEKFMQYIYEHRGKVNSTLLAPIVGGYNTFAR
TQSIKHAREQPAGSYGGYIFEGFHANGLSATTLDTSKLLPIVEHCVKQLE
EDKPKILPGAYTPLTVLELIQQGIDVFDTSYAYCASLNFKALSFSFVQDA
VEHVPFLDITDEAIKEDFTPPLSNCNCLTCQKHTRAYLHHLYKTNELLGP
ILLMVHNLYHYMAFFEKIRESVAKDTLPQLTELVRNQNGKTQVDYSIAAN
TKVISKATMGKGFAAAAVASFLDH
BO04477.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:36:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3434-PA | 418 | CG3434-PA | 1..418 | 1..418 | 2180 | 100 | Plus |
| Tgt-PA | 427 | CG4947-PA | 132..364 | 128..379 | 202 | 26.5 | Plus |
