Clone BO04480 Report

Search the DGRC for BO04480

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:44
Well:80
Vector:pDNR-Dual
Associated Gene/TranscriptCG5149-RA
Protein status:BO04480.pep: validated full length
Sequenced Size:1378

Clone Sequence Records

BO04480.3prime Sequence

827 bp (757 high quality bases) assembled on 2005-12-01

> BO04480.3prime
ATGGTCTAGAAAGCTTGCATCATCCATGTTGGGCTCACGCAATCCATCCG
AGTGCATTTTCTTGCCCGCAATTTCCAACATGGCCCGATCTTCCAAATTG
CCATCCAGCACAGAACGTTTGTGACCGTCGCCTTCTTCGTCTTCTTCTTT
AACTGGTAAGTCTCCTACGGCCCAAACTTCCATGTTTCGTATTTTGAACT
GTTTCCGTTTACTCAACTGCACGTAGTCTCGATATGTAGTGCAACTTTCA
ACGCTTTGTCCATCGCCGAAACTGCAGTCAATCCAAAGGCCCCAAAAATC
AAACTGACCGCCCATGCCCAGGCCATTCGGCATAGTCTGCTGATTCAAAT
TCAAATACTGATAGTGATTGTTATAAGTTGTGGCCGAAAAGCACCGCATG
GCAGGGCTTAAGGTGTAGAGCAATGAGCTGTCATCGCCTCCAAATTGCGG
TTTCACGGACCACGTTTCGGACGCGTAGCCGCCAAATATATATTGATCCT
CGTCCTCAATAAAGAACAGCGTTGGTCCTTTGTCCAGCACTTTTCCCAAC
ATCGTCGAGAAGCTTTCCCCGTTGATTTTCGATGAGAATAGAAAGCGCCA
TTTGTGCCGATGTTCGCGGGGCAGCTGAGCATTGATATACAGGACGTGAG
GTAGTTCGATGATAGGGCGATAATGACTATTTTGCGGAGCATCACACAGT
GCTGGCAGAATTGGAATTTCCATTTCCTTGATTATGTTGCGTTTGCTGCC
ACCATGGCGACAATACAGCTGGCTAAAGACCTCGCGCCAAATCTGCAAAA
ACTGCGGAGTGACGTGTAACCAACGTT

BO04480.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:06:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG5149-PA 1347 CG5149-RA 536..1344 827..19 4045 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:16:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG5149-RA 1898 CG5149-RA 686..1494 827..19 4045 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 15:16:44
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 7385430..7385805 318..693 1880 100 Plus
2L 23513712 2L 7385867..7386001 693..827 675 100 Plus
2L 23513712 2L 7385260..7385367 212..319 540 100 Plus
2L 23513712 2L 7384890..7384991 19..120 510 100 Plus
2L 23513712 2L 7385050..7385142 121..213 465 100 Plus
Blast to na_te.dros performed 2015-02-13 15:16:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dmir\TRAM 3452 Dmir\TRAM DMTRAM 3452bp Derived from Y08905 (Rel. 51, Last updated, Version 3). 2781..2874 196..287 141 64.2 Plus

BO04480.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:03:59 Download gff for BO04480.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5149-PA 536..1347 16..827 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:17:33 Download gff for BO04480.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5149-PA 536..1347 16..827 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:01:53 Download gff for BO04480.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5149-RA 686..1494 19..827 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:48:01 Download gff for BO04480.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5149-RA 686..1494 19..827 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 16:48:01 Download gff for BO04480.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 7384885..7384991 14..120 96 <- Plus
2L 7385050..7385140 121..211 100 <- Plus
2L 7385260..7385366 212..318 100 <- Plus
2L 7385431..7385804 319..692 100 <- Plus
2L 7385867..7386001 693..827 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:01:53 Download gff for BO04480.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 7384885..7384991 14..120 96 <- Plus
arm_2L 7385050..7385140 121..211 100 <- Plus
arm_2L 7385260..7385366 212..318 100 <- Plus
arm_2L 7385431..7385804 319..692 100 <- Plus
arm_2L 7385867..7386001 693..827 100   Plus

BO04480.5prime Sequence

793 bp (743 high quality bases) assembled on 2005-11-29

> BO04480.5prime
GAAGTTATCAGTCGACATGGGAAATGCGAGTGGCAAGCGGGAGACGGATA
ATCTCTACAATTCGGAAGAGCTACGCATGCTGGAATCCGCGTACAAAAAC
GCCTCTGGCGGAGCACTTGAGAAGTTGACCCAAGACAGATTGGTGGAAAC
TTGGTCGCAAACCATCGAAAGATCCCTGGCCGAAAGTACGGCTCAGTATC
TATTTACGCCCACGAAGCCAGGTCAGCAATGTGTCAACCTTCAGCTGAAG
AAATTTGGAGAGCCCTACTACATCATGGAACGCGGTACTATTGACCAGAA
AATGCAAATGCTCCTGGGCTCAATGGAGAGAAGTGGAAATGACACCTTCA
ACAGCAAGCAATTGGAGCAATATATCTACTCGGTGATCAAGAGCTACGTG
CACTTGGAAAGTACAGCGAAAAACTCTGGCATCAAGGAGTGGCACGATCT
TGGCTTTAACACCACGGAAAGGTCCGCCGCCACATTTGCCAAGGGCCTTA
TGAGAAATCTGGGCAAGGAGCTAGAGCACACTATGCCCAACGATGCCCTG
GAACGTTGGTTACACGTCACTCCGCAGTTTTTGCAGATTTGGCGCGAGGT
CTTTAGCCAGCTGTATTGTCGCCATGGTGGCAGCAAACGCAACATAATCA
AGGAAATGGAAATTCCAATTCTGCCAGCACTGTGTGATGCTCCGCAAAAT
AGTCATTATCGCCCTATCATCGAACTACCTCACGTCCTGTATATCAATGC
TCAGCTGCCCCGCGAACATCGGCACAAATGGCGCTTTCTATTC

BO04480.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:06:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG5149-PA 1347 CG5149-RA 1..777 17..793 3885 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:17:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG5149-RA 1898 CG5149-RA 151..927 17..793 3885 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 15:17:02
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 7385867..7386182 686..371 1580 100 Minus
2L 23513712 2L 7386424..7386649 370..145 1130 100 Minus
2L 23513712 2L 7387974..7388103 146..17 650 100 Minus
2L 23513712 2L 7385698..7385805 793..686 540 100 Minus
Blast to na_te.dros performed on 2015-02-13 15:17:04 has no hits.

BO04480.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:04:00 Download gff for BO04480.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5149-PA 1..777 17..793 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:17:35 Download gff for BO04480.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5149-PA 1..777 17..793 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:01:55 Download gff for BO04480.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5149-RA 144..927 8..793 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:48:06 Download gff for BO04480.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5149-RA 144..927 8..793 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 16:48:06 Download gff for BO04480.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 7387975..7388110 8..145 97   Minus
2L 7385698..7385804 687..793 100 <- Minus
2L 7385867..7386182 371..686 100 <- Minus
2L 7386424..7386648 146..370 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:01:55 Download gff for BO04480.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 7385698..7385804 687..793 100 <- Minus
arm_2L 7385867..7386182 371..686 100 <- Minus
arm_2L 7386424..7386648 146..370 100 <- Minus
arm_2L 7387975..7388110 8..145 97   Minus

BO04480.complete Sequence

1378 bp (1378 high quality bases) assembled on 2005-09-08

GenBank Submission: FJ629781

> BO04480.complete
GAAGTTATCAGTCGACATGGGAAATGCGAGTGGCAAGCGGGAGACGGATA
ATCTCTACAATTCGGAAGAGCTACGCATGCTGGAATCCGCGTACAAAAAC
GCCTCTGGCGGAGCACTTGAGAAGTTGACCCAAGACAGATTGGTGGAAAC
TTGGTCGCAAACCATCGAAAGATCCCTGGCCGAAAGTACGGCTCAGTATC
TATTTACGCCCACGAAGCCAGGTCAGCAATGTGTCAACCTTCAGCTGAAG
AAATTTGGAGAGCCCTACTACATCATGGAACGCGGTACTATTGACCAGAA
AATGCAAATGCTCCTGGGCTCAATGGAGAGAAGTGGAAATGACACCTTCA
ACAGCAAGCAATTGGAGCAATATATCTACTCGGTGATCAAGAGCTACGTG
CACTTGGAAAGTACAGCGAAAAACTCTGGCATCAAGGAGTGGCACGATCT
TGGCTTTAACACCACGGAAAGGTCCGCCGCCACATTTGCCAAGGGCCTTA
TGAGAAATCTGGGCAAGGAGCTAGAGCACACTATGCCCAACGATGCCCTG
GAACGTTGGTTACACGTCACTCCGCAGTTTTTGCAGATTTGGCGCGAGGT
CTTTAGCCAGCTGTATTGTCGCCATGGTGGCAGCAAACGCAACATAATCA
AGGAAATGGAAATTCCAATTCTGCCAGCACTGTGTGATGCTCCGCAAAAT
AGTCATTATCGCCCTATCATCGAACTACCTCACGTCCTGTATATCAATGC
TCAGCTGCCCCGCGAACATCGGCACAAATGGCGCTTTCTATTCTCATCGA
AAATCAACGGGGAAAGCTTCTCGACGATGTTGGGAAAAGTGCTGGACAAA
GGACCAACGCTGTTCTTTATTGAGGACGAGGATCAATATATATTTGGCGG
CTACGCGTCCGAAACGTGGTCCGTGAAACCGCAATTTGGAGGCGATGACA
GCTCATTGCTCTACACCTTAAGCCCTGCCATGCGGTGCTTTTCGGCCACA
ACTTATAACAATCACTATCAGTATTTGAATTTGAATCAGCAGACTATGCC
GAATGGCCTGGGCATGGGCGGTCAGTTTGATTTTTGGGGCCTTTGGATTG
ACTGCAGTTTCGGCGATGGACAAAGCGTTGAAAGTTGCACTACATATCGA
GACTACGTGCAGTTGAGTAAACGGAAACAGTTCAAAATACGAAACATGGA
AGTTTGGGCCGTAGGAGACTTACCAGTTAAAGAAGAAGACGAAGAAGGCG
ACGGTCACAAACGTTCTGTGCTGGATGGCAATTTGGAAGATCGGGCCATG
TTGGAAATTGCGGGCAAGAAAATGCACTCGGATGGATTGCGTGAGCCCAA
CATGGATGATGCAAGCTTTCTAGACCAT

BO04480.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:36:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG5149-RA 1347 CG5149-PA 1..1344 17..1360 6720 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:36:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG5149-RA 1898 CG5149-RA 151..1494 17..1360 6720 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:36:03
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 7385430..7385805 1061..686 1880 100 Minus
2L 23513712 2L 7385867..7386182 686..371 1580 100 Minus
2L 23513712 2L 7386424..7386649 370..145 1130 100 Minus
2L 23513712 2L 7387974..7388103 146..17 650 100 Minus
2L 23513712 2L 7385260..7385367 1167..1060 540 100 Minus
2L 23513712 2L 7384890..7384991 1360..1259 510 100 Minus
2L 23513712 2L 7385050..7385142 1258..1166 465 100 Minus
Blast to na_te.dros performed 2014-11-28 08:36:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dmir\TRAM 3452 Dmir\TRAM DMTRAM 3452bp Derived from Y08905 (Rel. 51, Last updated, Version 3). 2781..2874 1183..1092 141 64.2 Minus

BO04480.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:40:49 Download gff for BO04480.complete
Subject Subject Range Query Range Percent Splice Strand
CG5149-RA 1..1347 17..1363 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:59:26 Download gff for BO04480.complete
Subject Subject Range Query Range Percent Splice Strand
CG5149-RA 146..1489 17..1362 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:23:40 Download gff for BO04480.complete
Subject Subject Range Query Range Percent Splice Strand
CG5149-RA 151..1494 17..1362 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:40:49 Download gff for BO04480.complete
Subject Subject Range Query Range Percent Splice Strand
CG5149-RA 139..1489 8..1360 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:21:20 Download gff for BO04480.complete
Subject Subject Range Query Range Percent Splice Strand
CG5149-RA 151..1494 17..1362 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:21:20 Download gff for BO04480.complete
Subject Subject Range Query Range Percent Splice Strand
2L 7384887..7384991 1259..1362 98 <- Minus
2L 7385050..7385140 1168..1258 100 <- Minus
2L 7385260..7385366 1061..1167 100 <- Minus
2L 7385431..7385804 687..1060 100 <- Minus
2L 7385867..7386182 371..686 100 <- Minus
2L 7386424..7386648 146..370 100 <- Minus
2L 7387975..7388103 17..145 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:23:40 Download gff for BO04480.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 7385050..7385140 1168..1258 100 <- Minus
arm_2L 7385260..7385366 1061..1167 100 <- Minus
arm_2L 7384887..7384991 1259..1362 98 <- Minus
arm_2L 7385431..7385804 687..1060 100 <- Minus
arm_2L 7385867..7386182 371..686 100 <- Minus
arm_2L 7386424..7386648 146..370 100 <- Minus
arm_2L 7387975..7388103 17..145 100   Minus

BO04480.pep Sequence

Translation from 16 to 1378

> BO04480.pep
MGNASGKRETDNLYNSEELRMLESAYKNASGGALEKLTQDRLVETWSQTI
ERSLAESTAQYLFTPTKPGQQCVNLQLKKFGEPYYIMERGTIDQKMQMLL
GSMERSGNDTFNSKQLEQYIYSVIKSYVHLESTAKNSGIKEWHDLGFNTT
ERSAATFAKGLMRNLGKELEHTMPNDALERWLHVTPQFLQIWREVFSQLY
CRHGGSKRNIIKEMEIPILPALCDAPQNSHYRPIIELPHVLYINAQLPRE
HRHKWRFLFSSKINGESFSTMLGKVLDKGPTLFFIEDEDQYIFGGYASET
WSVKPQFGGDDSSLLYTLSPAMRCFSATTYNNHYQYLNLNQQTMPNGLGM
GGQFDFWGLWIDCSFGDGQSVESCTTYRDYVQLSKRKQFKIRNMEVWAVG
DLPVKEEDEEGDGHKRSVLDGNLEDRAMLEIAGKKMHSDGLREPNMDDAS
FLDH

BO04480.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:31:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG5149-PA 448 CG5149-PA 1..448 1..448 2394 100 Plus
mtd-PQ 192 CG32464-PQ 48..190 249..398 168 29.1 Plus
mtd-PH 192 CG32464-PH 48..190 249..398 168 29.1 Plus
mtd-PA 210 CG32464-PA 66..208 249..398 168 29.1 Plus
mtd-PI 213 CG32464-PI 69..211 249..398 168 29.1 Plus