Clone Sequence Records
BO04480.3prime Sequence
827 bp (757 high quality bases) assembled on 2005-12-01
> BO04480.3prime
ATGGTCTAGAAAGCTTGCATCATCCATGTTGGGCTCACGCAATCCATCCG
AGTGCATTTTCTTGCCCGCAATTTCCAACATGGCCCGATCTTCCAAATTG
CCATCCAGCACAGAACGTTTGTGACCGTCGCCTTCTTCGTCTTCTTCTTT
AACTGGTAAGTCTCCTACGGCCCAAACTTCCATGTTTCGTATTTTGAACT
GTTTCCGTTTACTCAACTGCACGTAGTCTCGATATGTAGTGCAACTTTCA
ACGCTTTGTCCATCGCCGAAACTGCAGTCAATCCAAAGGCCCCAAAAATC
AAACTGACCGCCCATGCCCAGGCCATTCGGCATAGTCTGCTGATTCAAAT
TCAAATACTGATAGTGATTGTTATAAGTTGTGGCCGAAAAGCACCGCATG
GCAGGGCTTAAGGTGTAGAGCAATGAGCTGTCATCGCCTCCAAATTGCGG
TTTCACGGACCACGTTTCGGACGCGTAGCCGCCAAATATATATTGATCCT
CGTCCTCAATAAAGAACAGCGTTGGTCCTTTGTCCAGCACTTTTCCCAAC
ATCGTCGAGAAGCTTTCCCCGTTGATTTTCGATGAGAATAGAAAGCGCCA
TTTGTGCCGATGTTCGCGGGGCAGCTGAGCATTGATATACAGGACGTGAG
GTAGTTCGATGATAGGGCGATAATGACTATTTTGCGGAGCATCACACAGT
GCTGGCAGAATTGGAATTTCCATTTCCTTGATTATGTTGCGTTTGCTGCC
ACCATGGCGACAATACAGCTGGCTAAAGACCTCGCGCCAAATCTGCAAAA
ACTGCGGAGTGACGTGTAACCAACGTT
BO04480.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:06:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5149-PA | 1347 | CG5149-RA | 536..1344 | 827..19 | 4045 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:16:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5149-RA | 1898 | CG5149-RA | 686..1494 | 827..19 | 4045 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 15:16:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 7385430..7385805 | 318..693 | 1880 | 100 | Plus |
2L | 23513712 | 2L | 7385867..7386001 | 693..827 | 675 | 100 | Plus |
2L | 23513712 | 2L | 7385260..7385367 | 212..319 | 540 | 100 | Plus |
2L | 23513712 | 2L | 7384890..7384991 | 19..120 | 510 | 100 | Plus |
2L | 23513712 | 2L | 7385050..7385142 | 121..213 | 465 | 100 | Plus |
Blast to na_te.dros performed 2015-02-13 15:16:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dmir\TRAM | 3452 | Dmir\TRAM DMTRAM 3452bp Derived from Y08905 (Rel. 51, Last updated, Version 3). | 2781..2874 | 196..287 | 141 | 64.2 | Plus |
BO04480.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:03:59 Download gff for
BO04480.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5149-PA | 536..1347 | 16..827 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:17:33 Download gff for
BO04480.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5149-PA | 536..1347 | 16..827 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:01:53 Download gff for
BO04480.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5149-RA | 686..1494 | 19..827 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:48:01 Download gff for
BO04480.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5149-RA | 686..1494 | 19..827 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 16:48:01 Download gff for
BO04480.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 7384885..7384991 | 14..120 | 96 | <- | Plus |
2L | 7385050..7385140 | 121..211 | 100 | <- | Plus |
2L | 7385260..7385366 | 212..318 | 100 | <- | Plus |
2L | 7385431..7385804 | 319..692 | 100 | <- | Plus |
2L | 7385867..7386001 | 693..827 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:01:53 Download gff for
BO04480.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 7384885..7384991 | 14..120 | 96 | <- | Plus |
arm_2L | 7385050..7385140 | 121..211 | 100 | <- | Plus |
arm_2L | 7385260..7385366 | 212..318 | 100 | <- | Plus |
arm_2L | 7385431..7385804 | 319..692 | 100 | <- | Plus |
arm_2L | 7385867..7386001 | 693..827 | 100 | | Plus |
BO04480.5prime Sequence
793 bp (743 high quality bases) assembled on 2005-11-29
> BO04480.5prime
GAAGTTATCAGTCGACATGGGAAATGCGAGTGGCAAGCGGGAGACGGATA
ATCTCTACAATTCGGAAGAGCTACGCATGCTGGAATCCGCGTACAAAAAC
GCCTCTGGCGGAGCACTTGAGAAGTTGACCCAAGACAGATTGGTGGAAAC
TTGGTCGCAAACCATCGAAAGATCCCTGGCCGAAAGTACGGCTCAGTATC
TATTTACGCCCACGAAGCCAGGTCAGCAATGTGTCAACCTTCAGCTGAAG
AAATTTGGAGAGCCCTACTACATCATGGAACGCGGTACTATTGACCAGAA
AATGCAAATGCTCCTGGGCTCAATGGAGAGAAGTGGAAATGACACCTTCA
ACAGCAAGCAATTGGAGCAATATATCTACTCGGTGATCAAGAGCTACGTG
CACTTGGAAAGTACAGCGAAAAACTCTGGCATCAAGGAGTGGCACGATCT
TGGCTTTAACACCACGGAAAGGTCCGCCGCCACATTTGCCAAGGGCCTTA
TGAGAAATCTGGGCAAGGAGCTAGAGCACACTATGCCCAACGATGCCCTG
GAACGTTGGTTACACGTCACTCCGCAGTTTTTGCAGATTTGGCGCGAGGT
CTTTAGCCAGCTGTATTGTCGCCATGGTGGCAGCAAACGCAACATAATCA
AGGAAATGGAAATTCCAATTCTGCCAGCACTGTGTGATGCTCCGCAAAAT
AGTCATTATCGCCCTATCATCGAACTACCTCACGTCCTGTATATCAATGC
TCAGCTGCCCCGCGAACATCGGCACAAATGGCGCTTTCTATTC
BO04480.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:06:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5149-PA | 1347 | CG5149-RA | 1..777 | 17..793 | 3885 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:17:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5149-RA | 1898 | CG5149-RA | 151..927 | 17..793 | 3885 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 15:17:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 7385867..7386182 | 686..371 | 1580 | 100 | Minus |
2L | 23513712 | 2L | 7386424..7386649 | 370..145 | 1130 | 100 | Minus |
2L | 23513712 | 2L | 7387974..7388103 | 146..17 | 650 | 100 | Minus |
2L | 23513712 | 2L | 7385698..7385805 | 793..686 | 540 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 15:17:04 has no hits.
BO04480.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:04:00 Download gff for
BO04480.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5149-PA | 1..777 | 17..793 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:17:35 Download gff for
BO04480.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5149-PA | 1..777 | 17..793 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:01:55 Download gff for
BO04480.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5149-RA | 144..927 | 8..793 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:48:06 Download gff for
BO04480.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5149-RA | 144..927 | 8..793 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 16:48:06 Download gff for
BO04480.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 7387975..7388110 | 8..145 | 97 | | Minus |
2L | 7385698..7385804 | 687..793 | 100 | <- | Minus |
2L | 7385867..7386182 | 371..686 | 100 | <- | Minus |
2L | 7386424..7386648 | 146..370 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:01:55 Download gff for
BO04480.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 7385698..7385804 | 687..793 | 100 | <- | Minus |
arm_2L | 7385867..7386182 | 371..686 | 100 | <- | Minus |
arm_2L | 7386424..7386648 | 146..370 | 100 | <- | Minus |
arm_2L | 7387975..7388110 | 8..145 | 97 | | Minus |
BO04480.complete Sequence
1378 bp (1378 high quality bases) assembled on 2005-09-08
GenBank Submission: FJ629781
> BO04480.complete
GAAGTTATCAGTCGACATGGGAAATGCGAGTGGCAAGCGGGAGACGGATA
ATCTCTACAATTCGGAAGAGCTACGCATGCTGGAATCCGCGTACAAAAAC
GCCTCTGGCGGAGCACTTGAGAAGTTGACCCAAGACAGATTGGTGGAAAC
TTGGTCGCAAACCATCGAAAGATCCCTGGCCGAAAGTACGGCTCAGTATC
TATTTACGCCCACGAAGCCAGGTCAGCAATGTGTCAACCTTCAGCTGAAG
AAATTTGGAGAGCCCTACTACATCATGGAACGCGGTACTATTGACCAGAA
AATGCAAATGCTCCTGGGCTCAATGGAGAGAAGTGGAAATGACACCTTCA
ACAGCAAGCAATTGGAGCAATATATCTACTCGGTGATCAAGAGCTACGTG
CACTTGGAAAGTACAGCGAAAAACTCTGGCATCAAGGAGTGGCACGATCT
TGGCTTTAACACCACGGAAAGGTCCGCCGCCACATTTGCCAAGGGCCTTA
TGAGAAATCTGGGCAAGGAGCTAGAGCACACTATGCCCAACGATGCCCTG
GAACGTTGGTTACACGTCACTCCGCAGTTTTTGCAGATTTGGCGCGAGGT
CTTTAGCCAGCTGTATTGTCGCCATGGTGGCAGCAAACGCAACATAATCA
AGGAAATGGAAATTCCAATTCTGCCAGCACTGTGTGATGCTCCGCAAAAT
AGTCATTATCGCCCTATCATCGAACTACCTCACGTCCTGTATATCAATGC
TCAGCTGCCCCGCGAACATCGGCACAAATGGCGCTTTCTATTCTCATCGA
AAATCAACGGGGAAAGCTTCTCGACGATGTTGGGAAAAGTGCTGGACAAA
GGACCAACGCTGTTCTTTATTGAGGACGAGGATCAATATATATTTGGCGG
CTACGCGTCCGAAACGTGGTCCGTGAAACCGCAATTTGGAGGCGATGACA
GCTCATTGCTCTACACCTTAAGCCCTGCCATGCGGTGCTTTTCGGCCACA
ACTTATAACAATCACTATCAGTATTTGAATTTGAATCAGCAGACTATGCC
GAATGGCCTGGGCATGGGCGGTCAGTTTGATTTTTGGGGCCTTTGGATTG
ACTGCAGTTTCGGCGATGGACAAAGCGTTGAAAGTTGCACTACATATCGA
GACTACGTGCAGTTGAGTAAACGGAAACAGTTCAAAATACGAAACATGGA
AGTTTGGGCCGTAGGAGACTTACCAGTTAAAGAAGAAGACGAAGAAGGCG
ACGGTCACAAACGTTCTGTGCTGGATGGCAATTTGGAAGATCGGGCCATG
TTGGAAATTGCGGGCAAGAAAATGCACTCGGATGGATTGCGTGAGCCCAA
CATGGATGATGCAAGCTTTCTAGACCAT
BO04480.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:36:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5149-RA | 1347 | CG5149-PA | 1..1344 | 17..1360 | 6720 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:36:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5149-RA | 1898 | CG5149-RA | 151..1494 | 17..1360 | 6720 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:36:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 7385430..7385805 | 1061..686 | 1880 | 100 | Minus |
2L | 23513712 | 2L | 7385867..7386182 | 686..371 | 1580 | 100 | Minus |
2L | 23513712 | 2L | 7386424..7386649 | 370..145 | 1130 | 100 | Minus |
2L | 23513712 | 2L | 7387974..7388103 | 146..17 | 650 | 100 | Minus |
2L | 23513712 | 2L | 7385260..7385367 | 1167..1060 | 540 | 100 | Minus |
2L | 23513712 | 2L | 7384890..7384991 | 1360..1259 | 510 | 100 | Minus |
2L | 23513712 | 2L | 7385050..7385142 | 1258..1166 | 465 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 08:36:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dmir\TRAM | 3452 | Dmir\TRAM DMTRAM 3452bp Derived from Y08905 (Rel. 51, Last updated, Version 3). | 2781..2874 | 1183..1092 | 141 | 64.2 | Minus |
BO04480.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:40:49 Download gff for
BO04480.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5149-RA | 1..1347 | 17..1363 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:59:26 Download gff for
BO04480.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5149-RA | 146..1489 | 17..1362 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:23:40 Download gff for
BO04480.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5149-RA | 151..1494 | 17..1362 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:40:49 Download gff for
BO04480.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5149-RA | 139..1489 | 8..1360 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:21:20 Download gff for
BO04480.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5149-RA | 151..1494 | 17..1362 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:21:20 Download gff for
BO04480.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 7384887..7384991 | 1259..1362 | 98 | <- | Minus |
2L | 7385050..7385140 | 1168..1258 | 100 | <- | Minus |
2L | 7385260..7385366 | 1061..1167 | 100 | <- | Minus |
2L | 7385431..7385804 | 687..1060 | 100 | <- | Minus |
2L | 7385867..7386182 | 371..686 | 100 | <- | Minus |
2L | 7386424..7386648 | 146..370 | 100 | <- | Minus |
2L | 7387975..7388103 | 17..145 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:23:40 Download gff for
BO04480.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 7385050..7385140 | 1168..1258 | 100 | <- | Minus |
arm_2L | 7385260..7385366 | 1061..1167 | 100 | <- | Minus |
arm_2L | 7384887..7384991 | 1259..1362 | 98 | <- | Minus |
arm_2L | 7385431..7385804 | 687..1060 | 100 | <- | Minus |
arm_2L | 7385867..7386182 | 371..686 | 100 | <- | Minus |
arm_2L | 7386424..7386648 | 146..370 | 100 | <- | Minus |
arm_2L | 7387975..7388103 | 17..145 | 100 | | Minus |
BO04480.pep Sequence
Translation from 16 to 1378
> BO04480.pep
MGNASGKRETDNLYNSEELRMLESAYKNASGGALEKLTQDRLVETWSQTI
ERSLAESTAQYLFTPTKPGQQCVNLQLKKFGEPYYIMERGTIDQKMQMLL
GSMERSGNDTFNSKQLEQYIYSVIKSYVHLESTAKNSGIKEWHDLGFNTT
ERSAATFAKGLMRNLGKELEHTMPNDALERWLHVTPQFLQIWREVFSQLY
CRHGGSKRNIIKEMEIPILPALCDAPQNSHYRPIIELPHVLYINAQLPRE
HRHKWRFLFSSKINGESFSTMLGKVLDKGPTLFFIEDEDQYIFGGYASET
WSVKPQFGGDDSSLLYTLSPAMRCFSATTYNNHYQYLNLNQQTMPNGLGM
GGQFDFWGLWIDCSFGDGQSVESCTTYRDYVQLSKRKQFKIRNMEVWAVG
DLPVKEEDEEGDGHKRSVLDGNLEDRAMLEIAGKKMHSDGLREPNMDDAS
FLDH
BO04480.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:31:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5149-PA | 448 | CG5149-PA | 1..448 | 1..448 | 2394 | 100 | Plus |
mtd-PQ | 192 | CG32464-PQ | 48..190 | 249..398 | 168 | 29.1 | Plus |
mtd-PH | 192 | CG32464-PH | 48..190 | 249..398 | 168 | 29.1 | Plus |
mtd-PA | 210 | CG32464-PA | 66..208 | 249..398 | 168 | 29.1 | Plus |
mtd-PI | 213 | CG32464-PI | 69..211 | 249..398 | 168 | 29.1 | Plus |