Clone Sequence Records
BO04483.3prime Sequence
774 bp (771 high quality bases) assembled on 2005-09-08
> BO04483.3prime
ATGGTCTAGAAAGCTTGCACGTCTGCCCGACCACGAGGTTTTCCGCCTGC
CGCCGCTGCTGGAGCTACTCGAGCTGCTCGACGAAGAGTCGCTGGAGCTG
GACGAACTGGACGACGACGAGGAGGACACGGAAGAGGTAGAGTCGCGTGA
GGTACGCTTGCGCTCCTTGTCGCCATTGCCAGTGCCCTCTTTGCTCTTGA
CATCCGTGGAAGTGACTTCTTCGTCGCCCCAGAGATCGTACTTTGATAGA
TCCTCGTCGTCTCCCTCGTCGTCGTCCTCATCTTCTTCCTCATCATTCCG
CTGCTCATCTCGGCTAGACCTTCTGGGCCTCTTTGAGTCCTCTCTATGCT
CGCCGTGCTTTCGCTTCTTGCGACGACCGAACTCATCGTACTCGCTATCC
GAATCCTGACGATCCTTGTACTCTACCACGCCGCGATCATTGTATCCACC
GCCAAAGCCAGTCCGCTCCTCCACATCCGAGAACTTAGGAGCGTTGCACA
TATTGCAGGTTTGGCGACGGGCCCAGTTCACATTCGCGCATTTGCTGCAC
TGCCAGTCCTCGGCGCTGAACAAGCCCCGCGACTTGTCGGCCGCCGCCTT
GCCGATCTCGGTGCCCAGCTTTTTCTTGCTTGAGCTGCTGCTACTGCTGC
TGCTCCCGTTGCCGCGTTCCCGCTCCCGGTCTCGATCCCTGTCGCGCTCC
GGCTTATCACTGCCATCGCGGTCCCGGTCGCCTTTGTTGCACTGCAAACG
GCGGGCGAAGTTCAGATGGCGACA
BO04483.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:06:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3732-PA | 849 | CG3732-RA | 91..846 | 774..19 | 3705 | 99.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:08:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3732-RA | 1262 | CG3732-RA | 273..1028 | 774..19 | 3735 | 99.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:08:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 22639041..22639481 | 19..459 | 2175 | 99.5 | Plus |
2R | 25286936 | 2R | 22639536..22639852 | 458..774 | 1570 | 99.7 | Plus |
Blast to na_te.dros performed 2015-02-13 00:08:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6748..6861 | 740..624 | 136 | 59.8 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2281..2405 | 728..599 | 134 | 58.5 | Minus |
roo | 9092 | roo DM_ROO 9092bp | 1059..1145 | 680..590 | 129 | 66.3 | Minus |
BO04483.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:04:02 Download gff for
BO04483.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3732-PA | 92..849 | 18..773 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:17:39 Download gff for
BO04483.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3732-PA | 92..849 | 18..773 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 20:30:46 Download gff for
BO04483.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3732-RA | 274..1033 | 12..773 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:40:44 Download gff for
BO04483.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3732-RA | 274..1033 | 12..773 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:40:44 Download gff for
BO04483.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 22639036..22639480 | 12..458 | 98 | <- | Plus |
2R | 22639537..22639851 | 459..773 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 20:30:46 Download gff for
BO04483.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 18526541..18526985 | 12..458 | 98 | <- | Plus |
arm_2R | 18527042..18527356 | 459..773 | 99 | | Plus |
BO04483.5prime Sequence
660 bp (656 high quality bases) assembled on 2005-12-01
> BO04483.5prime
GAAGTTATCAGTCGACATGTCCAGTTCAAATGGAGGCGTGGCATCAGGGG
CCGCGGGAAGCAGCGGCGTCGCTTCGCCTGGCGATTGGATTTGCCCAGAT
TACGACTGTCGCCATCTGAACTTCGCCCGCCGTTTGCAGTGCAACAAATG
CGACCGGGACCGCGATGGCAGTGATAAGCCGGAGCGCGACAGGGATCGAG
ACCGGGAGCGGGAACGCGGCAACGGGAGCAGCAGCAGTAGCAGCAGCTCA
AGCAAGAAAAAGCTGGGCACCGAGATCGGCAAGGCGGCGGCCGACAAGTC
GCGGGGCTTGTTCAGCGCCGAGGACTGGCAGTGCAGCAAATGCGCGAATG
TGAACTGGGCCCGTCGCCAAACCTGCAATATGTGCAACGCTCCTAAGTTC
TCGGATGTGGAGGAGCGGACTGGCTTTGGCGGTGGATACAATGATCGCGG
CGTGGTAGAGTACAAGGATCGTCAGGATTCGGATAGCGAGTACGATGAGT
TCGGTCGTCGCAAGAAGCGAAAGCACGGCGAGCATAGAGAGGACTCAAAG
AGGCCCAGAAGGTCTAGCCGAGATGAGCAGCGGAATGATGAGGAAGAAGA
TGAGGACGACGACGAGGGAGACGACGAGGATCTATCAAAGTACGATCTCT
GGGGCGACGA
BO04483.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:06:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3732-PA | 849 | CG3732-RA | 1..644 | 17..660 | 3220 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:22:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3732-RA | 1262 | CG3732-RA | 180..826 | 14..660 | 3235 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:22:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 22639536..22639853 | 423..106 | 1590 | 100 | Minus |
2R | 25286936 | 2R | 22639243..22639481 | 660..422 | 1195 | 100 | Minus |
2R | 25286936 | 2R | 22639931..22640022 | 105..14 | 460 | 100 | Minus |
Blast to na_te.dros performed 2015-02-12 06:22:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6748..6861 | 141..257 | 136 | 59.8 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2281..2405 | 153..282 | 134 | 58.5 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1059..1145 | 201..291 | 129 | 66.3 | Plus |
BO04483.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:04:03 Download gff for
BO04483.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3732-PA | 1..643 | 17..659 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:17:40 Download gff for
BO04483.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3732-PA | 1..643 | 17..659 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:26:34 Download gff for
BO04483.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3732-RA | 176..825 | 9..659 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:10:39 Download gff for
BO04483.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3732-RA | 176..825 | 9..659 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:10:39 Download gff for
BO04483.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 22639537..22639853 | 106..422 | 100 | <- | Minus |
2R | 22639931..22640024 | 9..105 | 96 | | Minus |
2R | 22639244..22639480 | 423..659 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:26:34 Download gff for
BO04483.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 18526749..18526985 | 423..659 | 100 | <- | Minus |
arm_2R | 18527042..18527358 | 106..422 | 100 | <- | Minus |
arm_2R | 18527436..18527529 | 9..105 | 96 | | Minus |
BO04483.complete Sequence
880 bp assembled on 2008-11-10
> BO04483.complete
GAAGTTATCAGTCGACATGTCCAGTTCAAATGGAGGCGTGGCATCAGGGG
CCGCGGGAAGCAGCGGCGTCGCTTCGCCTGGCGATTGGATTTGCCCAGAT
TACGACTGTCGCCATCTGAACTTCGCCCGCCGTTTGCAGTGCAACAAATG
CGACCGGGACCGCGATGGCAGTGATAAGCCGGAGCGCGACAGGGATCGAG
ACCGGGAGCGGGAACGCGGCAACGGGAGCAGCAGCAGTAGCAGCAGCTCA
AGCAAGAAAAAGCTGGGCACCGAGATCGGCAAGGCGGCGGCCGACAAGTC
GCGGGGCTTGTTCAGCGCCGAGGACTGGCAGTGCAGCAAATGCGCGAATG
TGAACTGGGCCCGTCGCCAAACCTGCAATATGTGCAACGCTCCTAAGTTC
TCGGATGTGGAGGAGCGGACTGGCTTTGGCGGTGGATACAATGATCGCGG
CGTGGTAGAGTACAAGGATCGTCAGGATTCGGATAGCGAGTACGATGAGT
TCGGTCGTCGCAAGAAGCGAAAGCACGGCGAGCATAGAGAGGACTCAAAG
AGGCCCAGAAGGTCTAGCCGAGATGAGCAGCGGAATGATGAGGAAGAAGA
TGAGGACGACGACGAGGGAGACGACGAGGATCTATCAAAGTACGATCTCT
GGGGCGACGAAGAAGTCACTTCCACGGATGTCAAGAGCAAAGAGGGCACT
GGCAATGGCGACAAGGAGCGCAAGCGTACCTCACGCGACTCTACCTCTTC
CGTGTCCTCCTCGTCGTCGTCCAGTTCGTCCAGCTCCAGCGACTCTTCGT
CGAGCAGCTCGAGTAGCTCCAGCAGCGGCGGCAGGCGGAAAACCTCCTCG
TCGGGCAGACGTGCAAGCTTTCTAGACCAT
BO04483.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 17:03:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3732-RA | 849 | CG3732-PA | 1..846 | 17..862 | 4230 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:03:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3732-RA | 1262 | CG3732-RA | 180..1028 | 14..862 | 4245 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 17:03:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 22639041..22639481 | 862..422 | 2205 | 100 | Minus |
2R | 25286936 | 2R | 22639536..22639853 | 423..106 | 1590 | 100 | Minus |
2R | 25286936 | 2R | 22639931..22640022 | 105..14 | 460 | 100 | Minus |
Blast to na_te.dros performed 2014-11-27 17:03:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6748..6861 | 141..257 | 136 | 59.8 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2281..2405 | 153..282 | 134 | 58.5 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1059..1145 | 201..291 | 129 | 66.3 | Plus |
BO04483.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:49:55 Download gff for
BO04483.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3732-RA | 138..995 | 9..869 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:02:43 Download gff for
BO04483.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3732-RA | 183..1028 | 17..864 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:08:06 Download gff for
BO04483.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3732-RA | 145..990 | 17..864 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:33:28 Download gff for
BO04483.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3732-RA | 183..1028 | 17..864 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:33:28 Download gff for
BO04483.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 22639037..22639480 | 423..864 | 99 | <- | Minus |
2R | 22639537..22639853 | 106..422 | 100 | <- | Minus |
2R | 22639931..22640019 | 17..105 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:02:43 Download gff for
BO04483.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 18526542..18526985 | 423..864 | 99 | <- | Minus |
arm_2R | 18527042..18527358 | 106..422 | 100 | <- | Minus |
arm_2R | 18527436..18527524 | 17..105 | 100 | | Minus |
BO04483.pep Sequence
Translation from 16 to 880
> BO04483.pep
MSSSNGGVASGAAGSSGVASPGDWICPDYDCRHLNFARRLQCNKCDRDRD
GSDKPERDRDRDRERERGNGSSSSSSSSSKKKLGTEIGKAAADKSRGLFS
AEDWQCSKCANVNWARRQTCNMCNAPKFSDVEERTGFGGGYNDRGVVEYK
DRQDSDSEYDEFGRRKKRKHGEHREDSKRPRRSSRDEQRNDEEEDEDDDE
GDDEDLSKYDLWGDEEVTSTDVKSKEGTGNGDKERKRTSRDSTSSVSSSS
SSSSSSSSDSSSSSSSSSSSGGRRKTSSSGRRASFLDH
BO04483.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:16:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3732-PA | 282 | CG3732-PA | 1..282 | 1..282 | 1484 | 100 | Plus |
PNUTS-PA | 628 | CG33526-PA | 281..416 | 148..284 | 157 | 33.6 | Plus |
PNUTS-PB | 628 | CG33526-PB | 281..416 | 148..284 | 157 | 33.6 | Plus |
PNUTS-PE | 1135 | CG33526-PE | 281..416 | 148..284 | 157 | 33.6 | Plus |
PNUTS-PD | 1135 | CG33526-PD | 281..416 | 148..284 | 157 | 33.6 | Plus |