Clone BO04483 Report

Search the DGRC for BO04483

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:44
Well:83
Vector:pDNR-Dual
Associated Gene/TranscriptCG3732-RA
Protein status:BO04483.pep: Imported from assembly
Sequenced Size:880

Clone Sequence Records

BO04483.3prime Sequence

774 bp (771 high quality bases) assembled on 2005-09-08

> BO04483.3prime
ATGGTCTAGAAAGCTTGCACGTCTGCCCGACCACGAGGTTTTCCGCCTGC
CGCCGCTGCTGGAGCTACTCGAGCTGCTCGACGAAGAGTCGCTGGAGCTG
GACGAACTGGACGACGACGAGGAGGACACGGAAGAGGTAGAGTCGCGTGA
GGTACGCTTGCGCTCCTTGTCGCCATTGCCAGTGCCCTCTTTGCTCTTGA
CATCCGTGGAAGTGACTTCTTCGTCGCCCCAGAGATCGTACTTTGATAGA
TCCTCGTCGTCTCCCTCGTCGTCGTCCTCATCTTCTTCCTCATCATTCCG
CTGCTCATCTCGGCTAGACCTTCTGGGCCTCTTTGAGTCCTCTCTATGCT
CGCCGTGCTTTCGCTTCTTGCGACGACCGAACTCATCGTACTCGCTATCC
GAATCCTGACGATCCTTGTACTCTACCACGCCGCGATCATTGTATCCACC
GCCAAAGCCAGTCCGCTCCTCCACATCCGAGAACTTAGGAGCGTTGCACA
TATTGCAGGTTTGGCGACGGGCCCAGTTCACATTCGCGCATTTGCTGCAC
TGCCAGTCCTCGGCGCTGAACAAGCCCCGCGACTTGTCGGCCGCCGCCTT
GCCGATCTCGGTGCCCAGCTTTTTCTTGCTTGAGCTGCTGCTACTGCTGC
TGCTCCCGTTGCCGCGTTCCCGCTCCCGGTCTCGATCCCTGTCGCGCTCC
GGCTTATCACTGCCATCGCGGTCCCGGTCGCCTTTGTTGCACTGCAAACG
GCGGGCGAAGTTCAGATGGCGACA

BO04483.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:06:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG3732-PA 849 CG3732-RA 91..846 774..19 3705 99.6 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:08:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG3732-RA 1262 CG3732-RA 273..1028 774..19 3735 99.6 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:08:23
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 22639041..22639481 19..459 2175 99.5 Plus
2R 25286936 2R 22639536..22639852 458..774 1570 99.7 Plus
Blast to na_te.dros performed 2015-02-13 00:08:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6748..6861 740..624 136 59.8 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2281..2405 728..599 134 58.5 Minus
roo 9092 roo DM_ROO 9092bp 1059..1145 680..590 129 66.3 Minus

BO04483.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:04:02 Download gff for BO04483.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3732-PA 92..849 18..773 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:17:39 Download gff for BO04483.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3732-PA 92..849 18..773 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 20:30:46 Download gff for BO04483.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3732-RA 274..1033 12..773 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:40:44 Download gff for BO04483.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3732-RA 274..1033 12..773 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:40:44 Download gff for BO04483.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 22639036..22639480 12..458 98 <- Plus
2R 22639537..22639851 459..773 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 20:30:46 Download gff for BO04483.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 18526541..18526985 12..458 98 <- Plus
arm_2R 18527042..18527356 459..773 99   Plus

BO04483.5prime Sequence

660 bp (656 high quality bases) assembled on 2005-12-01

> BO04483.5prime
GAAGTTATCAGTCGACATGTCCAGTTCAAATGGAGGCGTGGCATCAGGGG
CCGCGGGAAGCAGCGGCGTCGCTTCGCCTGGCGATTGGATTTGCCCAGAT
TACGACTGTCGCCATCTGAACTTCGCCCGCCGTTTGCAGTGCAACAAATG
CGACCGGGACCGCGATGGCAGTGATAAGCCGGAGCGCGACAGGGATCGAG
ACCGGGAGCGGGAACGCGGCAACGGGAGCAGCAGCAGTAGCAGCAGCTCA
AGCAAGAAAAAGCTGGGCACCGAGATCGGCAAGGCGGCGGCCGACAAGTC
GCGGGGCTTGTTCAGCGCCGAGGACTGGCAGTGCAGCAAATGCGCGAATG
TGAACTGGGCCCGTCGCCAAACCTGCAATATGTGCAACGCTCCTAAGTTC
TCGGATGTGGAGGAGCGGACTGGCTTTGGCGGTGGATACAATGATCGCGG
CGTGGTAGAGTACAAGGATCGTCAGGATTCGGATAGCGAGTACGATGAGT
TCGGTCGTCGCAAGAAGCGAAAGCACGGCGAGCATAGAGAGGACTCAAAG
AGGCCCAGAAGGTCTAGCCGAGATGAGCAGCGGAATGATGAGGAAGAAGA
TGAGGACGACGACGAGGGAGACGACGAGGATCTATCAAAGTACGATCTCT
GGGGCGACGA

BO04483.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:06:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG3732-PA 849 CG3732-RA 1..644 17..660 3220 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:22:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG3732-RA 1262 CG3732-RA 180..826 14..660 3235 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:22:32
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 22639536..22639853 423..106 1590 100 Minus
2R 25286936 2R 22639243..22639481 660..422 1195 100 Minus
2R 25286936 2R 22639931..22640022 105..14 460 100 Minus
Blast to na_te.dros performed 2015-02-12 06:22:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6748..6861 141..257 136 59.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2281..2405 153..282 134 58.5 Plus
roo 9092 roo DM_ROO 9092bp 1059..1145 201..291 129 66.3 Plus

BO04483.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:04:03 Download gff for BO04483.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3732-PA 1..643 17..659 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:17:40 Download gff for BO04483.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3732-PA 1..643 17..659 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:26:34 Download gff for BO04483.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3732-RA 176..825 9..659 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:10:39 Download gff for BO04483.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3732-RA 176..825 9..659 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:10:39 Download gff for BO04483.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 22639537..22639853 106..422 100 <- Minus
2R 22639931..22640024 9..105 96   Minus
2R 22639244..22639480 423..659 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:26:34 Download gff for BO04483.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 18526749..18526985 423..659 100 <- Minus
arm_2R 18527042..18527358 106..422 100 <- Minus
arm_2R 18527436..18527529 9..105 96   Minus

BO04483.complete Sequence

880 bp assembled on 2008-11-10

> BO04483.complete
GAAGTTATCAGTCGACATGTCCAGTTCAAATGGAGGCGTGGCATCAGGGG
CCGCGGGAAGCAGCGGCGTCGCTTCGCCTGGCGATTGGATTTGCCCAGAT
TACGACTGTCGCCATCTGAACTTCGCCCGCCGTTTGCAGTGCAACAAATG
CGACCGGGACCGCGATGGCAGTGATAAGCCGGAGCGCGACAGGGATCGAG
ACCGGGAGCGGGAACGCGGCAACGGGAGCAGCAGCAGTAGCAGCAGCTCA
AGCAAGAAAAAGCTGGGCACCGAGATCGGCAAGGCGGCGGCCGACAAGTC
GCGGGGCTTGTTCAGCGCCGAGGACTGGCAGTGCAGCAAATGCGCGAATG
TGAACTGGGCCCGTCGCCAAACCTGCAATATGTGCAACGCTCCTAAGTTC
TCGGATGTGGAGGAGCGGACTGGCTTTGGCGGTGGATACAATGATCGCGG
CGTGGTAGAGTACAAGGATCGTCAGGATTCGGATAGCGAGTACGATGAGT
TCGGTCGTCGCAAGAAGCGAAAGCACGGCGAGCATAGAGAGGACTCAAAG
AGGCCCAGAAGGTCTAGCCGAGATGAGCAGCGGAATGATGAGGAAGAAGA
TGAGGACGACGACGAGGGAGACGACGAGGATCTATCAAAGTACGATCTCT
GGGGCGACGAAGAAGTCACTTCCACGGATGTCAAGAGCAAAGAGGGCACT
GGCAATGGCGACAAGGAGCGCAAGCGTACCTCACGCGACTCTACCTCTTC
CGTGTCCTCCTCGTCGTCGTCCAGTTCGTCCAGCTCCAGCGACTCTTCGT
CGAGCAGCTCGAGTAGCTCCAGCAGCGGCGGCAGGCGGAAAACCTCCTCG
TCGGGCAGACGTGCAAGCTTTCTAGACCAT

BO04483.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 17:03:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG3732-RA 849 CG3732-PA 1..846 17..862 4230 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:03:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG3732-RA 1262 CG3732-RA 180..1028 14..862 4245 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 17:03:14
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 22639041..22639481 862..422 2205 100 Minus
2R 25286936 2R 22639536..22639853 423..106 1590 100 Minus
2R 25286936 2R 22639931..22640022 105..14 460 100 Minus
Blast to na_te.dros performed 2014-11-27 17:03:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6748..6861 141..257 136 59.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2281..2405 153..282 134 58.5 Plus
roo 9092 roo DM_ROO 9092bp 1059..1145 201..291 129 66.3 Plus

BO04483.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:49:55 Download gff for BO04483.complete
Subject Subject Range Query Range Percent Splice Strand
CG3732-RA 138..995 9..869 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:02:43 Download gff for BO04483.complete
Subject Subject Range Query Range Percent Splice Strand
CG3732-RA 183..1028 17..864 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:08:06 Download gff for BO04483.complete
Subject Subject Range Query Range Percent Splice Strand
CG3732-RA 145..990 17..864 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:33:28 Download gff for BO04483.complete
Subject Subject Range Query Range Percent Splice Strand
CG3732-RA 183..1028 17..864 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:33:28 Download gff for BO04483.complete
Subject Subject Range Query Range Percent Splice Strand
2R 22639037..22639480 423..864 99 <- Minus
2R 22639537..22639853 106..422 100 <- Minus
2R 22639931..22640019 17..105 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:02:43 Download gff for BO04483.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 18526542..18526985 423..864 99 <- Minus
arm_2R 18527042..18527358 106..422 100 <- Minus
arm_2R 18527436..18527524 17..105 100   Minus

BO04483.pep Sequence

Translation from 16 to 880

> BO04483.pep
MSSSNGGVASGAAGSSGVASPGDWICPDYDCRHLNFARRLQCNKCDRDRD
GSDKPERDRDRDRERERGNGSSSSSSSSSKKKLGTEIGKAAADKSRGLFS
AEDWQCSKCANVNWARRQTCNMCNAPKFSDVEERTGFGGGYNDRGVVEYK
DRQDSDSEYDEFGRRKKRKHGEHREDSKRPRRSSRDEQRNDEEEDEDDDE
GDDEDLSKYDLWGDEEVTSTDVKSKEGTGNGDKERKRTSRDSTSSVSSSS
SSSSSSSSDSSSSSSSSSSSGGRRKTSSSGRRASFLDH

BO04483.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:16:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG3732-PA 282 CG3732-PA 1..282 1..282 1484 100 Plus
PNUTS-PA 628 CG33526-PA 281..416 148..284 157 33.6 Plus
PNUTS-PB 628 CG33526-PB 281..416 148..284 157 33.6 Plus
PNUTS-PE 1135 CG33526-PE 281..416 148..284 157 33.6 Plus
PNUTS-PD 1135 CG33526-PD 281..416 148..284 157 33.6 Plus