Clone Sequence Records
BO04486.3prime Sequence
795 bp (792 high quality bases) assembled on 2005-12-01
> BO04486.3prime
ATGGTCTAGAAAGCTTGCAAGTATGTACGCCGAGGCGGCAGTAGGTGTAA
CATCATTATCATCGCTGAAGTTCAGCAGGTAATCATCGTCAAAATTGTTG
TGGGGCGAGCTGAATCGAAGTGATTGATCATCAAAGTTGTTGAATGTGGA
CGACGGATGCTTAAAGTAATCCGGCATTGGTTGGCTCATTGGGAACTCCT
CCTCCTCCAATTTTAGTCGCTTGCAAGGCGGCGCCTCGTTTTCATCGCGA
TTGCTACCATAGTTCATAAACTGGGTTGCAGTAAAACGATTAAGAGTGCC
CTTGGAGGTGCTGGGTATATCGTCGCTGGCCCAGGAAGATATGTTTTTGA
AGGGAGAGAGAGTGTCGACTCTAATTATTTGTGGTTTATCGGAAATTTCA
TTGGATAGCTGCTCATCAGTCTTCGGGTTTTCGCCGATTTTTACTTGTTT
GGCCGCATCAGCCGGCTCCTCCTCTCCTGAAGCCTCCCCTCCGGATTCCT
TGTCATCCGATACGGATTCCTCGACTTCTGAGCCAGATTTCTCATCATAT
CTATCCTGTTCTAGATGCAAAACCTCTTCTGACTTTTCTACTTTTACCTC
CTGCTCAAATCCTTCATCTTTCAGCGCCATTTCGAATTCTTCTTCTGATA
TTTCCTCAAAATCTTCGTCTGTGGCCTCCATTTCGTCACTGTCCTCTTCT
AATTCCGCATTTGGGACACCTGCCTCTTCTGAAGGAGAAAGCCAATCGGT
CTTCTCAAATTTCTCCTCTTCGATATGGCTTATCTCTGGATAGGG
BO04486.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:06:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8316-PA | 1665 | CG8316-RA | 886..1662 | 795..19 | 3885 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 13:23:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8316-RB | 1978 | CG8316-RB | 928..1704 | 795..19 | 3885 | 100 | Minus |
CG8316-RA | 1984 | CG8316-RA | 934..1710 | 795..19 | 3885 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 13:23:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 17630065..17630841 | 19..795 | 3885 | 100 | Plus |
Blast to na_te.dros performed 2015-02-13 13:23:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Juan | 4236 | Juan JUAN 4236bp | 265..299 | 72..39 | 118 | 85.7 | Minus |
BO04486.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:04:04 Download gff for
BO04486.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8316-PA | 886..1665 | 15..795 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:17:41 Download gff for
BO04486.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8316-PA | 886..1665 | 15..795 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 17:41:45 Download gff for
BO04486.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8316-RA | 934..1716 | 11..795 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:54:59 Download gff for
BO04486.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8316-RA | 934..1716 | 11..795 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 15:54:59 Download gff for
BO04486.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 17630059..17630841 | 11..795 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 17:41:45 Download gff for
BO04486.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 17524092..17524874 | 11..795 | 99 | | Plus |
BO04486.5prime Sequence
803 bp (742 high quality bases) assembled on 2005-12-01
> BO04486.5prime
GAAGTTATCAGTCGACATGGAAAAATATCCACTTGTCAAAGAATTTATGG
GGCAAAATTGGCCAAAAGATACCAAAATGGCGCAGCTCGAGAAGGAACTC
AAGAAAAGGAAAGAATTGATCGTCGAGGAGCAGATTGTAGGGCCGCGTTT
GGAGCAGGTGCTATTCGACCTGACCTTGGTCAAGCAGTGCGCCTTGGTAG
TGGAGGATAACGGTGCCGGTATGGCACAGGCCAACACCATGATACAGGAC
TGTATGTTCCAGATCACGCGAATTGAGGAGCTGCTCGAAATGGCCGGGCT
GCAGGACATCCTCTACTACACGGTGCATCGCAAGGAGCAGGAGTTCCAGC
GCAAAATTAAGCTGCAGGAGGATTTGGCCGAGCAAGAGAATCAGCAGAAC
ACAATCCTCGAATCGCGCAGCATCGTCCAGGAATTCCGAAAAGAGCAAGC
CTTAAAAAAAGAGGCAGATAAGGAGCTAGCCTCAGTGGACGACCAACTGG
ACCAGTCGGATCGCGAGTGGACAATTACGCTGAGAAGTATGACGGATAAG
CTTAATAAGAAGATAGTCAGCGTTTTACAGATGGGAAAGCTGATAAACGA
ATTGAAGGAAGAGTTGCAAAAAAGGAATTTGATTAAAACGGGTGTCACTA
AGGGCGCTGAACCAAGTTTGGCTGGTGTTCCATCCGCTAGCACCATTTCA
CCATTTCAGTCCGCTTCGGATTTCCTCAACAACTTCATCTTTAAGAATAT
CAGACCAGATGACAATAAATCCATGACGAGCGTGAATAGAGAGATCACTA
CTA
BO04486.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:06:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8316-PA | 1665 | CG8316-RA | 1..787 | 17..803 | 3935 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 02:27:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8316-RA | 1984 | CG8316-RA | 49..835 | 17..803 | 3935 | 100 | Plus |
CG8316-RB | 1978 | CG8316-RB | 49..829 | 17..803 | 3835 | 99.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 02:27:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 17631527..17631817 | 425..135 | 1455 | 100 | Minus |
X | 23542271 | X | 17630940..17631131 | 803..612 | 960 | 100 | Minus |
X | 23542271 | X | 17631182..17631370 | 613..425 | 945 | 100 | Minus |
X | 23542271 | X | 17631882..17631999 | 134..17 | 590 | 100 | Minus |
Blast to na_te.dros performed 2015-02-11 02:27:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
invader6 | 4885 | invader6 INVADER6 4885bp | 1076..1139 | 43..106 | 140 | 68.8 | Plus |
TART-A | 13424 | TART-A 13424bp | 5820..5869 | 574..623 | 115 | 70 | Plus |
BO04486.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:04:05 Download gff for
BO04486.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8316-PA | 1..786 | 17..802 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:17:42 Download gff for
BO04486.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8316-PA | 1..786 | 17..802 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 20:47:49 Download gff for
BO04486.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8316-RA | 49..834 | 17..802 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:22:52 Download gff for
BO04486.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8316-RA | 49..834 | 17..802 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:22:52 Download gff for
BO04486.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 17630941..17631129 | 614..802 | 100 | <- | Minus |
X | 17631182..17631369 | 426..613 | 100 | <- | Minus |
X | 17631527..17631817 | 135..425 | 100 | <- | Minus |
X | 17631882..17631999 | 17..134 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 20:47:49 Download gff for
BO04486.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 17524974..17525162 | 614..802 | 100 | <- | Minus |
arm_X | 17525215..17525402 | 426..613 | 100 | <- | Minus |
arm_X | 17525560..17525850 | 135..425 | 100 | <- | Minus |
arm_X | 17525915..17526032 | 17..134 | 100 | | Minus |
BO04486.complete Sequence
1696 bp assembled on 2007-03-23
GenBank Submission: FJ629782
> BO04486.complete
GAAGTTATCAGTCGACATGGAAAAATATCCACTTGTCAAAGAATTTATGG
GGCAAAATTGGCCAAAAGATACCAAAATGGCGCAGCTCGAGAAGGAACTC
AAGAAAAGGAAAGAATTGATCGTCGAGGAGCAGATTGTAGGGCCGCGTTT
GGAGCAGGTGCTATTCGACCTGACCTTGGTCAAGCAGTGCGCCTTGGTAG
TGGAGGATAACGGTGCCGGTATGGCACAGGCCAACACCATGATACAGGAC
TGTATGTTCCAGATCACGCGAATTGAGGAGCTGCTCGAAATGGCCGGGCT
GCAGGACATCCTCTACTACACGGTGCATCGCAAGGAGCAGGAGTTCCAGC
GCAAAATTAAGCTGCAGGAGGATTTGGCCGAGCAAGAGAATCAGCAGAAC
ACAATCCTCGAATCGCGCAGCATCGTCCAGGAATTCCGAAAAGAGCAAGC
CTTAAAAAAAGAGGCAGATAAGGAGCTAGCCTCAGTGGACGACCAACTGG
ACCAGTCGGATCGCGAGTGGACAATTACGCTGAGAAGTATGACGGATAAG
CTTAATAAGAAGATAGTCAGCGTTTTACAGATGGGAAAGCTGATAAACGA
ATTGAAGGAAGAGTTGCAAAAAAGGAATTTGATTAAAACGGGTGTCACTA
AGGGCGCTGAACCAAGTTTGGCTGGTGTTCCATCCGCTAGCACCATTTCA
CCATTTCAGTCCGCTTCGGATTTCCTCAACAACTTCATCTTTAAGAATAT
CAGACCAGATGACAATAAATCCATGACGAGCGTGAATAGAGAGATCACTA
CTAAGAAGCTGGAGACTCCTCTGCGATCCATTTTGATCAAATGCAAGGAG
GTCGAGTCTGTTGCCATTTCCAACTCGCCAACAAAGCAAGTGCGTTTTTC
TCCCTATCCAGAGATAAGCCATATCGAAGAGGAGAAATTTGAGAAGACCG
ATTGGCTTTCTCCTTCAGAAGAGGCAGGTGTCCCAAATGCGGAATTAGAA
GAGGACAGTGACGAAATGGAGGCCACAGACGAAGATTTTGAGGAAATATC
AGAAGAAGAATTCGAAATGGCGCTGAAAGATGAAGGATTTGAGCAGGAGG
TAAAAGTAGAAAAGTCAGAAGAGGTTTTGCATCTAGAACAGGATAGATAT
GATGAGAAATCTGGCTCAGAAGTCGAGGAATCCGTATCGGATGACAAGGA
ATCCGGAGGGGAGGCTTCAGGAGAGGAGGAGCCGGCTGATGCGGCCAAAC
AAGTAAAAATCGGCGAAAACCCGAAGACTGATGAGCAGCTATCCAATGAA
ATTTCCGATAAACCACAAATAATTAGAGTCGACACTCTCTCTCCCTTCAA
AAACATATCTTCCTGGGCCAGCGACGATATACCCAGCACCTCCAAGGGCA
CTCTTAATCGTTTTACTGCAACCCAGTTTATGAACTATGGTAGCAATCGC
GATGAAAACGAGGCGCCGCCTTGCAAGCGACTAAAATTGGAGGAGGAGGA
GTTCCCAATGAGCCAACCAATGCCGGATTACTTTAAGCATCCGTCGTCCA
CATTCAACAACTTTGATGATCAATCACTTCGATTCAGCTCGCCCCACAAC
AATTTTGACGATGATTACCTGCTGAACTTCAGCGATGATAATGATGTTAC
ACCTACTGCCGCCTCGGCGTACATACTTGCAAGCTTTCTAGACCAT
BO04486.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 19:43:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8316-RA | 1665 | CG8316-PA | 1..1662 | 17..1678 | 8310 | 100 | Plus |
CG8316-RB | 1659 | CG8316-PB | 1..1656 | 17..1678 | 8185 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 19:43:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8316-RA | 1984 | CG8316-RA | 49..1710 | 17..1678 | 8310 | 100 | Plus |
CG8316-RB | 1978 | CG8316-RB | 49..1704 | 17..1678 | 8185 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 19:43:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 17630065..17631131 | 1678..612 | 5335 | 100 | Minus |
X | 23542271 | X | 17631527..17631817 | 425..135 | 1455 | 100 | Minus |
X | 23542271 | X | 17631182..17631370 | 613..425 | 945 | 100 | Minus |
X | 23542271 | X | 17631882..17631999 | 134..17 | 590 | 100 | Minus |
Blast to na_te.dros performed 2014-11-27 19:43:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
invader6 | 4885 | invader6 INVADER6 4885bp | 1076..1139 | 43..106 | 140 | 68.8 | Plus |
TART-A | 13424 | TART-A 13424bp | 5820..5869 | 574..623 | 115 | 70 | Plus |
BO04486.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:11:48 Download gff for
BO04486.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8316-RA | 1..1665 | 17..1682 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:30:06 Download gff for
BO04486.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8316-RA | 22..1689 | 17..1686 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:02:33 Download gff for
BO04486.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8316-RA | 49..1710 | 17..1680 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:11:48 Download gff for
BO04486.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8316-RA | 22..1689 | 17..1686 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:07:08 Download gff for
BO04486.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8316-RA | 49..1710 | 17..1680 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:07:08 Download gff for
BO04486.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 17630063..17631129 | 614..1680 | 99 | <- | Minus |
X | 17631182..17631369 | 426..613 | 100 | <- | Minus |
X | 17631527..17631817 | 135..425 | 100 | <- | Minus |
X | 17631882..17631999 | 17..134 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:02:33 Download gff for
BO04486.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 17525560..17525850 | 135..425 | 100 | <- | Minus |
arm_X | 17525915..17526032 | 17..134 | 100 | | Minus |
arm_X | 17524096..17525162 | 614..1680 | 99 | <- | Minus |
arm_X | 17525215..17525402 | 426..613 | 100 | <- | Minus |
BO04486.pep Sequence
Translation from 16 to 1696
> BO04486.pep
MEKYPLVKEFMGQNWPKDTKMAQLEKELKKRKELIVEEQIVGPRLEQVLF
DLTLVKQCALVVEDNGAGMAQANTMIQDCMFQITRIEELLEMAGLQDILY
YTVHRKEQEFQRKIKLQEDLAEQENQQNTILESRSIVQEFRKEQALKKEA
DKELASVDDQLDQSDREWTITLRSMTDKLNKKIVSVLQMGKLINELKEEL
QKRNLIKTGVTKGAEPSLAGVPSASTISPFQSASDFLNNFIFKNIRPDDN
KSMTSVNREITTKKLETPLRSILIKCKEVESVAISNSPTKQVRFSPYPEI
SHIEEEKFEKTDWLSPSEEAGVPNAELEEDSDEMEATDEDFEEISEEEFE
MALKDEGFEQEVKVEKSEEVLHLEQDRYDEKSGSEVEESVSDDKESGGEA
SGEEEPADAAKQVKIGENPKTDEQLSNEISDKPQIIRVDTLSPFKNISSW
ASDDIPSTSKGTLNRFTATQFMNYGSNRDENEAPPCKRLKLEEEEFPMSQ
PMPDYFKHPSSTFNNFDDQSLRFSSPHNNFDDDYLLNFSDDNDVTPTAAS
AYILASFLDH
BO04486.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:35:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8316-PA | 554 | CG8316-PA | 1..554 | 1..554 | 2827 | 100 | Plus |
CG8316-PB | 552 | CG8316-PB | 1..552 | 1..554 | 2798 | 99.5 | Plus |