Clone BO04486 Report

Search the DGRC for BO04486

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:44
Well:86
Vector:pDNR-Dual
Associated Gene/TranscriptCG8316-RA
Protein status:BO04486.pep: validated full length
Sequenced Size:1696

Clone Sequence Records

BO04486.3prime Sequence

795 bp (792 high quality bases) assembled on 2005-12-01

> BO04486.3prime
ATGGTCTAGAAAGCTTGCAAGTATGTACGCCGAGGCGGCAGTAGGTGTAA
CATCATTATCATCGCTGAAGTTCAGCAGGTAATCATCGTCAAAATTGTTG
TGGGGCGAGCTGAATCGAAGTGATTGATCATCAAAGTTGTTGAATGTGGA
CGACGGATGCTTAAAGTAATCCGGCATTGGTTGGCTCATTGGGAACTCCT
CCTCCTCCAATTTTAGTCGCTTGCAAGGCGGCGCCTCGTTTTCATCGCGA
TTGCTACCATAGTTCATAAACTGGGTTGCAGTAAAACGATTAAGAGTGCC
CTTGGAGGTGCTGGGTATATCGTCGCTGGCCCAGGAAGATATGTTTTTGA
AGGGAGAGAGAGTGTCGACTCTAATTATTTGTGGTTTATCGGAAATTTCA
TTGGATAGCTGCTCATCAGTCTTCGGGTTTTCGCCGATTTTTACTTGTTT
GGCCGCATCAGCCGGCTCCTCCTCTCCTGAAGCCTCCCCTCCGGATTCCT
TGTCATCCGATACGGATTCCTCGACTTCTGAGCCAGATTTCTCATCATAT
CTATCCTGTTCTAGATGCAAAACCTCTTCTGACTTTTCTACTTTTACCTC
CTGCTCAAATCCTTCATCTTTCAGCGCCATTTCGAATTCTTCTTCTGATA
TTTCCTCAAAATCTTCGTCTGTGGCCTCCATTTCGTCACTGTCCTCTTCT
AATTCCGCATTTGGGACACCTGCCTCTTCTGAAGGAGAAAGCCAATCGGT
CTTCTCAAATTTCTCCTCTTCGATATGGCTTATCTCTGGATAGGG

BO04486.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:06:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG8316-PA 1665 CG8316-RA 886..1662 795..19 3885 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 13:23:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG8316-RB 1978 CG8316-RB 928..1704 795..19 3885 100 Minus
CG8316-RA 1984 CG8316-RA 934..1710 795..19 3885 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 13:23:50
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 17630065..17630841 19..795 3885 100 Plus
Blast to na_te.dros performed 2015-02-13 13:23:51
Subject Length Description Subject Range Query Range Score Percent Strand
Juan 4236 Juan JUAN 4236bp 265..299 72..39 118 85.7 Minus

BO04486.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:04:04 Download gff for BO04486.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8316-PA 886..1665 15..795 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:17:41 Download gff for BO04486.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8316-PA 886..1665 15..795 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 17:41:45 Download gff for BO04486.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8316-RA 934..1716 11..795 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:54:59 Download gff for BO04486.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8316-RA 934..1716 11..795 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 15:54:59 Download gff for BO04486.3prime
Subject Subject Range Query Range Percent Splice Strand
X 17630059..17630841 11..795 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 17:41:45 Download gff for BO04486.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 17524092..17524874 11..795 99   Plus

BO04486.5prime Sequence

803 bp (742 high quality bases) assembled on 2005-12-01

> BO04486.5prime
GAAGTTATCAGTCGACATGGAAAAATATCCACTTGTCAAAGAATTTATGG
GGCAAAATTGGCCAAAAGATACCAAAATGGCGCAGCTCGAGAAGGAACTC
AAGAAAAGGAAAGAATTGATCGTCGAGGAGCAGATTGTAGGGCCGCGTTT
GGAGCAGGTGCTATTCGACCTGACCTTGGTCAAGCAGTGCGCCTTGGTAG
TGGAGGATAACGGTGCCGGTATGGCACAGGCCAACACCATGATACAGGAC
TGTATGTTCCAGATCACGCGAATTGAGGAGCTGCTCGAAATGGCCGGGCT
GCAGGACATCCTCTACTACACGGTGCATCGCAAGGAGCAGGAGTTCCAGC
GCAAAATTAAGCTGCAGGAGGATTTGGCCGAGCAAGAGAATCAGCAGAAC
ACAATCCTCGAATCGCGCAGCATCGTCCAGGAATTCCGAAAAGAGCAAGC
CTTAAAAAAAGAGGCAGATAAGGAGCTAGCCTCAGTGGACGACCAACTGG
ACCAGTCGGATCGCGAGTGGACAATTACGCTGAGAAGTATGACGGATAAG
CTTAATAAGAAGATAGTCAGCGTTTTACAGATGGGAAAGCTGATAAACGA
ATTGAAGGAAGAGTTGCAAAAAAGGAATTTGATTAAAACGGGTGTCACTA
AGGGCGCTGAACCAAGTTTGGCTGGTGTTCCATCCGCTAGCACCATTTCA
CCATTTCAGTCCGCTTCGGATTTCCTCAACAACTTCATCTTTAAGAATAT
CAGACCAGATGACAATAAATCCATGACGAGCGTGAATAGAGAGATCACTA
CTA

BO04486.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:06:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG8316-PA 1665 CG8316-RA 1..787 17..803 3935 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 02:27:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG8316-RA 1984 CG8316-RA 49..835 17..803 3935 100 Plus
CG8316-RB 1978 CG8316-RB 49..829 17..803 3835 99.2 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 02:27:40
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 17631527..17631817 425..135 1455 100 Minus
X 23542271 X 17630940..17631131 803..612 960 100 Minus
X 23542271 X 17631182..17631370 613..425 945 100 Minus
X 23542271 X 17631882..17631999 134..17 590 100 Minus
Blast to na_te.dros performed 2015-02-11 02:27:42
Subject Length Description Subject Range Query Range Score Percent Strand
invader6 4885 invader6 INVADER6 4885bp 1076..1139 43..106 140 68.8 Plus
TART-A 13424 TART-A 13424bp 5820..5869 574..623 115 70 Plus

BO04486.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:04:05 Download gff for BO04486.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8316-PA 1..786 17..802 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:17:42 Download gff for BO04486.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8316-PA 1..786 17..802 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 20:47:49 Download gff for BO04486.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8316-RA 49..834 17..802 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:22:52 Download gff for BO04486.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8316-RA 49..834 17..802 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:22:52 Download gff for BO04486.5prime
Subject Subject Range Query Range Percent Splice Strand
X 17630941..17631129 614..802 100 <- Minus
X 17631182..17631369 426..613 100 <- Minus
X 17631527..17631817 135..425 100 <- Minus
X 17631882..17631999 17..134 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 20:47:49 Download gff for BO04486.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 17524974..17525162 614..802 100 <- Minus
arm_X 17525215..17525402 426..613 100 <- Minus
arm_X 17525560..17525850 135..425 100 <- Minus
arm_X 17525915..17526032 17..134 100   Minus

BO04486.complete Sequence

1696 bp assembled on 2007-03-23

GenBank Submission: FJ629782

> BO04486.complete
GAAGTTATCAGTCGACATGGAAAAATATCCACTTGTCAAAGAATTTATGG
GGCAAAATTGGCCAAAAGATACCAAAATGGCGCAGCTCGAGAAGGAACTC
AAGAAAAGGAAAGAATTGATCGTCGAGGAGCAGATTGTAGGGCCGCGTTT
GGAGCAGGTGCTATTCGACCTGACCTTGGTCAAGCAGTGCGCCTTGGTAG
TGGAGGATAACGGTGCCGGTATGGCACAGGCCAACACCATGATACAGGAC
TGTATGTTCCAGATCACGCGAATTGAGGAGCTGCTCGAAATGGCCGGGCT
GCAGGACATCCTCTACTACACGGTGCATCGCAAGGAGCAGGAGTTCCAGC
GCAAAATTAAGCTGCAGGAGGATTTGGCCGAGCAAGAGAATCAGCAGAAC
ACAATCCTCGAATCGCGCAGCATCGTCCAGGAATTCCGAAAAGAGCAAGC
CTTAAAAAAAGAGGCAGATAAGGAGCTAGCCTCAGTGGACGACCAACTGG
ACCAGTCGGATCGCGAGTGGACAATTACGCTGAGAAGTATGACGGATAAG
CTTAATAAGAAGATAGTCAGCGTTTTACAGATGGGAAAGCTGATAAACGA
ATTGAAGGAAGAGTTGCAAAAAAGGAATTTGATTAAAACGGGTGTCACTA
AGGGCGCTGAACCAAGTTTGGCTGGTGTTCCATCCGCTAGCACCATTTCA
CCATTTCAGTCCGCTTCGGATTTCCTCAACAACTTCATCTTTAAGAATAT
CAGACCAGATGACAATAAATCCATGACGAGCGTGAATAGAGAGATCACTA
CTAAGAAGCTGGAGACTCCTCTGCGATCCATTTTGATCAAATGCAAGGAG
GTCGAGTCTGTTGCCATTTCCAACTCGCCAACAAAGCAAGTGCGTTTTTC
TCCCTATCCAGAGATAAGCCATATCGAAGAGGAGAAATTTGAGAAGACCG
ATTGGCTTTCTCCTTCAGAAGAGGCAGGTGTCCCAAATGCGGAATTAGAA
GAGGACAGTGACGAAATGGAGGCCACAGACGAAGATTTTGAGGAAATATC
AGAAGAAGAATTCGAAATGGCGCTGAAAGATGAAGGATTTGAGCAGGAGG
TAAAAGTAGAAAAGTCAGAAGAGGTTTTGCATCTAGAACAGGATAGATAT
GATGAGAAATCTGGCTCAGAAGTCGAGGAATCCGTATCGGATGACAAGGA
ATCCGGAGGGGAGGCTTCAGGAGAGGAGGAGCCGGCTGATGCGGCCAAAC
AAGTAAAAATCGGCGAAAACCCGAAGACTGATGAGCAGCTATCCAATGAA
ATTTCCGATAAACCACAAATAATTAGAGTCGACACTCTCTCTCCCTTCAA
AAACATATCTTCCTGGGCCAGCGACGATATACCCAGCACCTCCAAGGGCA
CTCTTAATCGTTTTACTGCAACCCAGTTTATGAACTATGGTAGCAATCGC
GATGAAAACGAGGCGCCGCCTTGCAAGCGACTAAAATTGGAGGAGGAGGA
GTTCCCAATGAGCCAACCAATGCCGGATTACTTTAAGCATCCGTCGTCCA
CATTCAACAACTTTGATGATCAATCACTTCGATTCAGCTCGCCCCACAAC
AATTTTGACGATGATTACCTGCTGAACTTCAGCGATGATAATGATGTTAC
ACCTACTGCCGCCTCGGCGTACATACTTGCAAGCTTTCTAGACCAT

BO04486.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 19:43:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG8316-RA 1665 CG8316-PA 1..1662 17..1678 8310 100 Plus
CG8316-RB 1659 CG8316-PB 1..1656 17..1678 8185 99.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 19:43:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG8316-RA 1984 CG8316-RA 49..1710 17..1678 8310 100 Plus
CG8316-RB 1978 CG8316-RB 49..1704 17..1678 8185 99.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 19:43:29
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 17630065..17631131 1678..612 5335 100 Minus
X 23542271 X 17631527..17631817 425..135 1455 100 Minus
X 23542271 X 17631182..17631370 613..425 945 100 Minus
X 23542271 X 17631882..17631999 134..17 590 100 Minus
Blast to na_te.dros performed 2014-11-27 19:43:30
Subject Length Description Subject Range Query Range Score Percent Strand
invader6 4885 invader6 INVADER6 4885bp 1076..1139 43..106 140 68.8 Plus
TART-A 13424 TART-A 13424bp 5820..5869 574..623 115 70 Plus

BO04486.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:11:48 Download gff for BO04486.complete
Subject Subject Range Query Range Percent Splice Strand
CG8316-RA 1..1665 17..1682 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:30:06 Download gff for BO04486.complete
Subject Subject Range Query Range Percent Splice Strand
CG8316-RA 22..1689 17..1686 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:02:33 Download gff for BO04486.complete
Subject Subject Range Query Range Percent Splice Strand
CG8316-RA 49..1710 17..1680 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:11:48 Download gff for BO04486.complete
Subject Subject Range Query Range Percent Splice Strand
CG8316-RA 22..1689 17..1686 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:07:08 Download gff for BO04486.complete
Subject Subject Range Query Range Percent Splice Strand
CG8316-RA 49..1710 17..1680 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:07:08 Download gff for BO04486.complete
Subject Subject Range Query Range Percent Splice Strand
X 17630063..17631129 614..1680 99 <- Minus
X 17631182..17631369 426..613 100 <- Minus
X 17631527..17631817 135..425 100 <- Minus
X 17631882..17631999 17..134 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:02:33 Download gff for BO04486.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 17525560..17525850 135..425 100 <- Minus
arm_X 17525915..17526032 17..134 100   Minus
arm_X 17524096..17525162 614..1680 99 <- Minus
arm_X 17525215..17525402 426..613 100 <- Minus

BO04486.pep Sequence

Translation from 16 to 1696

> BO04486.pep
MEKYPLVKEFMGQNWPKDTKMAQLEKELKKRKELIVEEQIVGPRLEQVLF
DLTLVKQCALVVEDNGAGMAQANTMIQDCMFQITRIEELLEMAGLQDILY
YTVHRKEQEFQRKIKLQEDLAEQENQQNTILESRSIVQEFRKEQALKKEA
DKELASVDDQLDQSDREWTITLRSMTDKLNKKIVSVLQMGKLINELKEEL
QKRNLIKTGVTKGAEPSLAGVPSASTISPFQSASDFLNNFIFKNIRPDDN
KSMTSVNREITTKKLETPLRSILIKCKEVESVAISNSPTKQVRFSPYPEI
SHIEEEKFEKTDWLSPSEEAGVPNAELEEDSDEMEATDEDFEEISEEEFE
MALKDEGFEQEVKVEKSEEVLHLEQDRYDEKSGSEVEESVSDDKESGGEA
SGEEEPADAAKQVKIGENPKTDEQLSNEISDKPQIIRVDTLSPFKNISSW
ASDDIPSTSKGTLNRFTATQFMNYGSNRDENEAPPCKRLKLEEEEFPMSQ
PMPDYFKHPSSTFNNFDDQSLRFSSPHNNFDDDYLLNFSDDNDVTPTAAS
AYILASFLDH

BO04486.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:35:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG8316-PA 554 CG8316-PA 1..554 1..554 2827 100 Plus
CG8316-PB 552 CG8316-PB 1..552 1..554 2798 99.5 Plus