Clone Sequence Records
BO04488.3prime Sequence
900 bp (828 high quality bases) assembled on 2005-12-01
> BO04488.3prime
ATGGTCTAGAAAGCTTGCAACTGGCGTGCAGTCGTCTCTCTGAACGTGGG
CATCATAGTTCTGCTCGTTGATGAAAGTATGCGTGCACTTGGAGCAGTGG
AAGCGGCGATGGCGGTTGGTTCCGGGACTCTCGTGCTCCCGCAGATGGGC
CTTCATGTTGTACATCTGGGAGAAGCGCTTGTTGCACACCGGGCAGGCGA
AGGGCTTGTCCCCCGTGTGGGATCGCATGTGCCGCTCCAAGTGAGCCTTG
GTCCGGGTCTTGAAGCCGCACACCTGGCACTCCAGCCGTTTGGTCTCGCT
GTCGTGGATCATCTTGTGCTTGTACAGGGCCACCTTGTGAACGAATCGCT
TGGAGCAGACATCGCACTGGTATGGCGTTTCGCCGGAGTGCCAGGCCATG
TGGTGCTTCAGCCGGAACTTGCGGCTAAAGCGTTCCGGGCACACTGGGCA
GGCGAACTGCTTCACGGGCTCGTGGTTCTGCAGGTGCCCTATGAACCCGG
AGTACGATTGCAGCGTCTTGCCGCACTGATCACAGACGTAGCCGGGAAAG
TGCTCGCGTTTCGTGTGGACATTGTAAGCGCGCCGGCTGCTGAACTTCTC
CGGGCAGCTGGGGCATTGTATGTTGACCGTGTATTCGCCGGAGCTTTCGT
TGTCCTGCTCCTGGTCCTCGCCATCGGATATTATGTACTCTATTGCGCCG
TCCAGATGTTCGTCAAAGTCACTCATGGTATCTTCCTTAAAAAAGTCTTC
CTCCTGGGCCTCTTGCTTGTCATGTGGCAACAGATCCTCCTCCTCTATCT
CGTGGGCCACCTCCTCTATCTCGTGGGCCACCTCCTCTACCTCGTGGGCT
TTCTCTTCGTTAATGATAATCTCGTTGTCGATATCTAGCTCTAAGTCTAC
BO04488.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:06:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7928-PA | 1374 | CG7928-RA | 490..1371 | 900..19 | 4385 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 18:35:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7928-RA | 1631 | CG7928-RA | 559..1440 | 900..19 | 4395 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 18:35:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 30035431..30036312 | 19..900 | 4395 | 99.9 | Plus |
Blast to na_te.dros performed on 2015-02-09 18:35:31 has no hits.
BO04488.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:04:06 Download gff for
BO04488.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7928-PA | 490..1374 | 18..900 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:17:44 Download gff for
BO04488.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7928-PA | 490..1374 | 18..900 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 03:58:49 Download gff for
BO04488.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7928-RA | 559..1444 | 13..900 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 21:12:52 Download gff for
BO04488.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7928-RA | 559..1444 | 13..900 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 21:12:52 Download gff for
BO04488.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 30035427..30036312 | 13..900 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 03:58:49 Download gff for
BO04488.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 25861149..25862034 | 13..900 | 99 | | Plus |
BO04488.5prime Sequence
819 bp (711 high quality bases) assembled on 2005-12-01
> BO04488.5prime
GAAGTTATCAGTCGACATGAATTGCTGCATTTGTCAATTCTCGGTACGCG
TACCGAAGGACATTCACACCGATACCGTCGGACATCCGCCGGTGCTGATC
AGCGAACTGGTACTGCAGTGCACCCGGGGCACGAATTACGTCCTCACGGA
GGAATCGTCGACGATCTGCAAGAAGTGCTGCGAGAAGCTCGCCAGATACC
ACAAGTCCATACAAATAGCGCGCAAGCTGCGAGGGGAGATCCTGGAACTG
ATCCACAGTCCCTACATGTCCAAGGACCACAAGCAGACCTCCTACAAAGA
GGACGATCTCGACCGAGAGACCACCATAAGCAAATTCGATGGGAATATTG
AGGAGGCACAGCAACAGGACGAGGAGGAGCAGGAACTGGAGAGCGTGGGC
ACCACCGTCACCCTGGTCGGTCCCGCCGGCATCGTGGAGGAAGTGGCCGA
AGAGGAGCACACCTTCATTATCAAACAATCAGAGGAGGAGGATGAGTTCC
ACTCCGTAGACTTAGAGCTAGATATCGACAACGAGATTATCATTAACGAA
GAGGAAGCCCACGAGGTAGAGGAGGTGGCCCACGAGATAGAGGAGGTGGC
CCACGAGATAGAGGAGGAGGATCTGTTGCCACATGACAAGCAAGAGGCCC
AGGAGGAAGACTTTTTTAAGGAAGATACCATGAGTGACTTTGACGAACAT
CTGGACGGCGCAATAGAGTACATAATATCCGATGGCGAGGACCAGGAGCA
GGACAACGAAAGCTCCGGCGAATACACGGTCAACATACAATGCCCCAGCT
GCCCGGAGAAAGTTCACAG
BO04488.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:06:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7928-PA | 1374 | CG7928-RA | 1..794 | 17..810 | 3970 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 18:35:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7928-RA | 1631 | CG7928-RA | 70..868 | 17..816 | 3975 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 18:35:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 30036008..30036801 | 810..17 | 3970 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-09 18:35:39 has no hits.
BO04488.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:04:07 Download gff for
BO04488.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7928-PA | 1..803 | 17..819 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:17:45 Download gff for
BO04488.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7928-PA | 1..803 | 17..819 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 03:58:51 Download gff for
BO04488.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7928-RA | 60..872 | 8..819 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 21:12:53 Download gff for
BO04488.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7928-RA | 60..872 | 8..819 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 21:12:53 Download gff for
BO04488.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 30035999..30036811 | 8..819 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 03:58:51 Download gff for
BO04488.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 25861721..25862533 | 8..819 | 99 | | Minus |
BO04488.complete Sequence
1405 bp (1405 high quality bases) assembled on 2005-09-08
GenBank Submission: FJ629783
> BO04488.complete
GAAGTTATCAGTCGACATGAATTGCTGCATTTGTCAATTCTCGGTACGCG
TACCGAAGGACATTCACACCGATACCGTCGGACATCCGCCGGTGCTGATC
AGCGAACTGGTACTGCAGTGCACCCGGGGCACGAATTACGTCCTCACGGA
GGAATCGTCGACGATCTGCAAGAAGTGCTGCGAGAAGCTCGCCAGATACC
ACAAGTCCATACAAATAGCGCGCAAGCTGCGAGGGGAGATCCTGGAACTG
ATCCACAGTCCCTACATGTCCAAGGACCACAAGCAGACCTCCTACAAAGA
GGACGATCTCGACCGAGAGACCACCATAAGCAAATTCGATGGGAATATTG
AGGAGGCACAGCAACAGGACGAGGAGGAGCAGGAACTGGAGAGCGTGGGC
ACCACCGTCACCCTGGTCGGTCCCGCCGGCATCGTGGAGGAAGTGGCCGA
AGAGGAGCACACCTTCATTATCAAACAATCAGAGGAGGAGGATGAGTTCC
ACTCCGTAGACTTAGAGCTAGATATCGACAACGAGATTATCATTAACGAA
GAGGAAGCCCACGAGGTAGAGGAGGTGGCCCACGAGATAGAGGAGGTGGC
CCACGAGATAGAGGAGGAGGATCTGTTGCCACATGACAAGCAAGAGGCCC
AGGAGGAAGACTTTTTTAAGGAAGATACCATGAGTGACTTTGACGAACAT
CTGGACGGCGCAATAGAGTACATAATATCCGATGGCGAGGACCAGGAGCA
GGACAACGAAAGCTCCGGCGAATACACGGTCAACATACAATGCCCCAGCT
GCCCGGAGAAGTTCAGCAGCCGGCGCGCTTACAATGTCCACACGAAACGC
GAGCACTTTCCCGGCTACGTCTGTGATCAGTGCGGCAAGACGCTGCAATC
GTACTCCGGGTTCATAGGGCACCTGCAGAACCACGAGCCCGTGAAGCAGT
TCGCCTGCCCAGTGTGCCCGGAACGCTTTAGCCGCAAGTTCCGGCTGAAG
CACCACATGGCCTGGCACTCCGGCGAAACGCCATACCAGTGCGATGTCTG
CTCCAAGCGATTCGTTCACAAGGTGGCCCTGTACAAGCACAAGATGATCC
ACGACAGCGAGACCAAACGGCTGGAGTGCCAGGTGTGCGGCTTCAAGACC
CGGACCAAGGCTCACTTGGAGCGGCACATGCGATCCCACACGGGGGACAA
GCCCTTCGCCTGCCCGGTGTGCAACAAGCGCTTCTCCCAGATGTACAACA
TGAAGGCCCATCTGCGGGAGCACGAGAGTCCCGGAACCAACCGCCATCGC
CGCTTCCACTGCTCCAAGTGCACGCATACTTTCATCAACGAGCAGAACTA
TGATGCCCACGTTCAGAGAGACGACTGCACGCCAGTTGCAAGCTTTCTAG
ACCAT
BO04488.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:03:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7928-RA | 1374 | CG7928-PA | 1..1371 | 17..1387 | 6855 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:03:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7928-RA | 1631 | CG7928-RA | 70..1440 | 17..1387 | 6855 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 11:03:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 30035431..30036801 | 1387..17 | 6855 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 11:03:06 has no hits.
BO04488.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:40:35 Download gff for
BO04488.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7928-RA | 1..1374 | 17..1388 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:10:01 Download gff for
BO04488.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7928-RA | 36..1420 | 8..1393 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 11:08:01 Download gff for
BO04488.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7928-RA | 70..1440 | 17..1389 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:40:36 Download gff for
BO04488.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7928-RA | 36..1420 | 8..1393 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:37:37 Download gff for
BO04488.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7928-RA | 70..1440 | 17..1389 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:37:37 Download gff for
BO04488.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 30035427..30036801 | 17..1389 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 11:08:01 Download gff for
BO04488.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 25861149..25862523 | 17..1389 | 99 | | Minus |
BO04488.pep Sequence
Translation from 16 to 1405
> BO04488.pep
MNCCICQFSVRVPKDIHTDTVGHPPVLISELVLQCTRGTNYVLTEESSTI
CKKCCEKLARYHKSIQIARKLRGEILELIHSPYMSKDHKQTSYKEDDLDR
ETTISKFDGNIEEAQQQDEEEQELESVGTTVTLVGPAGIVEEVAEEEHTF
IIKQSEEEDEFHSVDLELDIDNEIIINEEEAHEVEEVAHEIEEVAHEIEE
EDLLPHDKQEAQEEDFFKEDTMSDFDEHLDGAIEYIISDGEDQEQDNESS
GEYTVNIQCPSCPEKFSSRRAYNVHTKREHFPGYVCDQCGKTLQSYSGFI
GHLQNHEPVKQFACPVCPERFSRKFRLKHHMAWHSGETPYQCDVCSKRFV
HKVALYKHKMIHDSETKRLECQVCGFKTRTKAHLERHMRSHTGDKPFACP
VCNKRFSQMYNMKAHLREHESPGTNRHRRFHCSKCTHTFINEQNYDAHVQ
RDDCTPVASFLDH
BO04488.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:34:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7928-PA | 457 | CG7928-PA | 1..457 | 1..457 | 2489 | 100 | Plus |
| crol-PB | 891 | CG14938-PB | 362..550 | 258..451 | 330 | 33.8 | Plus |
| crol-PI | 962 | CG14938-PI | 362..550 | 258..451 | 330 | 33.8 | Plus |
| crol-PE | 962 | CG14938-PE | 362..550 | 258..451 | 330 | 33.8 | Plus |
| crol-PA | 962 | CG14938-PA | 362..550 | 258..451 | 330 | 33.8 | Plus |
| crol-PB | 891 | CG14938-PB | 307..494 | 259..451 | 312 | 31.3 | Plus |
| crol-PI | 962 | CG14938-PI | 307..494 | 259..451 | 312 | 31.3 | Plus |
| crol-PE | 962 | CG14938-PE | 307..494 | 259..451 | 312 | 31.3 | Plus |
| crol-PB | 891 | CG14938-PB | 251..466 | 259..451 | 289 | 29.9 | Plus |
| crol-PI | 962 | CG14938-PI | 251..466 | 259..451 | 289 | 29.9 | Plus |
| crol-PE | 962 | CG14938-PE | 251..466 | 259..451 | 289 | 29.9 | Plus |
| crol-PB | 891 | CG14938-PB | 502..684 | 258..440 | 286 | 33.9 | Plus |
| crol-PB | 891 | CG14938-PB | 446..634 | 258..451 | 275 | 29.6 | Plus |
| crol-PI | 962 | CG14938-PI | 446..634 | 258..451 | 275 | 29.6 | Plus |
| crol-PE | 962 | CG14938-PE | 446..634 | 258..451 | 275 | 29.6 | Plus |
| crol-PB | 891 | CG14938-PB | 221..379 | 284..448 | 262 | 34.5 | Plus |
| crol-PI | 962 | CG14938-PI | 221..379 | 284..448 | 262 | 34.5 | Plus |
| crol-PE | 962 | CG14938-PE | 221..379 | 284..448 | 262 | 34.5 | Plus |
| crol-PI | 962 | CG14938-PI | 530..722 | 258..450 | 246 | 28.3 | Plus |
| crol-PE | 962 | CG14938-PE | 530..722 | 258..450 | 246 | 28.3 | Plus |
