Clone Sequence Records
BO04491.3prime Sequence
419 bp (290 high quality bases) assembled on 2005-12-01
> BO04491.3prime
ATGGTCTAGAAAGCTTGCCTTAAGTGCCTGGGACGCCTCGATTAGCCGCT
GAAGATCATCGTTGTTGCTCAGTGCGTGCTGCACGGCCTTGAGCACCTGG
GTGTCCATGGCCTGGGTCTGTTCGGGACTGAGTGCCAGGGTGCTCAGGCG
CTTGGCCAGTTCCGCCAACTTGGGCTGCCGCTCCAGAAAGATTTCCACGA
CTTGCGGCGAAATATTGGCCATTTTGGCCAACTGCTGGATGTACGGAGGC
AATGTTGAGTATTTGCCCTCCGCATCCTCTTGCATGATCAGCTTGGGCGT
GTTGAGATGTGGCTTGGTCACGGGGGCAGGTGTGGTTGTGGTCGTGGTGG
TGGTGTTCACCTGAATTGGCTTTGTGGTGGCCAGCGATACGGGACGCAGG
GGAATGGGATAGTGATACG
BO04491.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:06:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13333-PA | 1170 | CG13333-RA | 767..1167 | 419..19 | 1955 | 99.5 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:07:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| link-RA | 1394 | CG13333-RA | 806..1206 | 419..19 | 1975 | 99.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:07:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 13556754..13557154 | 419..19 | 1975 | 99.5 | Minus |
Blast to na_te.dros performed on 2015-02-12 10:07:21 has no hits.
BO04491.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:04:10 Download gff for
BO04491.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13333-PA | 767..1170 | 18..419 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:17:49 Download gff for
BO04491.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13333-PA | 767..1170 | 18..419 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:52:59 Download gff for
BO04491.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| link-RA | 806..1211 | 13..419 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:05:20 Download gff for
BO04491.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| link-RA | 806..1211 | 13..419 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:05:20 Download gff for
BO04491.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 13556754..13557159 | 13..419 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:52:59 Download gff for
BO04491.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 9444259..9444664 | 13..419 | 98 | | Minus |
BO04491.5prime Sequence
367 bp (323 high quality bases) assembled on 2005-12-01
> BO04491.5prime
GAAGTTATCAGTCGACATGATTGGTGTGCTAATGCGTTTTCTCTGGTCCT
TGGCCATGGTGCAGTGCATCCAGGCTAGAGTGTCGATGCTGCCTCGTTTT
TATGGACAAGACAGCGCTGTTATAGTGGACATCAATAGAAAATTCCCACC
TAGAATGGACTCCAAGCTGCAGAATGCCCTGTACTACAACCTGCCGGTCT
ACAAACTGATAAAGCCAACCACAACAACTACGACAACCACGACGGCTGCT
CCAACCTCTGGCTATCCTGCTGATCTCCTGAACATTGCTCACAACAAGCT
GGGCCTCAAAGATCTGCCCAATCTCGAGGAGCTGGGCGAGATGATTGGTA
CGGATGGTGCCAGCGAG
BO04491.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:06:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13333-PA | 1170 | CG13333-RA | 1..351 | 17..367 | 1755 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:07:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| link-RA | 1394 | CG13333-RA | 40..390 | 17..367 | 1755 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 02:07:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 13555988..13556338 | 17..367 | 1755 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 02:07:35 has no hits.
BO04491.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:04:11 Download gff for
BO04491.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13333-PA | 1..351 | 17..367 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:17:50 Download gff for
BO04491.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13333-PA | 1..351 | 17..367 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 06:34:41 Download gff for
BO04491.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| link-RA | 36..390 | 13..367 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:41:17 Download gff for
BO04491.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| link-RA | 36..390 | 13..367 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:41:17 Download gff for
BO04491.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 13555984..13556338 | 13..367 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 06:34:41 Download gff for
BO04491.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 9443489..9443843 | 13..367 | 99 | | Plus |
BO04491.complete Sequence
1201 bp assembled on 2010-02-24
GenBank Submission: KX798990
> BO04491.complete
GAAGTTATCAGTCGACATGATTGGTGTGCTAATGCGTTTTCTCTGGTCCT
TGGCCATGGTGCAGTGCATCCAGGCTAGAGTGTCGATGCTGCCTCGTTTT
TATGGACAAGACAGCGCTGTTATAGTGGACATCAATAGAAAATTCCCACC
TAGAATGGACTCCAAGCTGCAGAATGCCCTGTACTACAACCTGCCGGTCT
ACAAACTGATAAAGCCAACCACAACAACTACGACAACCACGACGGCTGCT
CCAACCTCTGGCTATCCTGCTGATCTCCTGAACATTGCTCACAACAAGCT
GGGCCTCAAAGATCTGCCCAATCTCGAGGAGCTGGGCGAGATGATTGGTA
CGGATGGTGCCAGCGAGACCATAGACTATATACGCACGCTAACTGGAACG
GAGGAGGGTTTGGCCCTGATGAAACAGTATCTGGATGCCCTGCACTTCGA
GGAGGCGGAGGAGGAGAATGTGGCCGAGGAACAAGAGAAGGCTGAAGACG
ACGACGACGATGATGATGACAACACCATGGGCAATGCCAGCTACGATGAG
ATGCCGCAGGAAAAATCCACCACCACTGCAGATCCCCGTCCTGAGCTGAG
TTTAATGCAGCGTTTCGGTGACTTTGTGAAGCAGTACAACCTGTGGTCTG
GTCAGGTCACCACTACCACCACTCCTGCTCCGTTCATCGCTCGGCCAAGT
GGCTCTTTCCAGCCCGTCTTTGTGGCTCCTCCTCCTGCTGGCTTGAAACC
TTTTCGTCCCATCCTGGTTAGGCAGCCACTGCCGTATCACTATCCCATTC
CCCTGCGTCCCGTATCGCTGGCCACCACAAAGCCAATCCAGGTGACCACC
ACCACCACGACCACAACCACACCTGCCCCCGTGACCAAGCCACATCTCAA
CACGCCCAAGCTGATCATGCAAGAGGATGCGGAGGGCAAATACTCAACAT
TGCCTCCGTACATCCAGCAGTTGGCCAAAATGGCCAATATTTCGCCGCAA
GTCGTGGAAATCTTTCTGGAGCGGCAGCCCAAGTTGGCGGAACTGGCCAA
GCGCCTGAGCACCCTGGCACTCAGTCCCGAACAGACCCAGGCCATGGACA
CCCAGGTGCTCAAGGCCGTGCAGCACGCACTGAGCAACAACGATGATCTT
CAGCGGCTAATCGAGGCGTCCCAGGCACTTAAGGCAAGCTTTCTAGACCA
T
BO04491.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:26:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| link-RA | 1170 | CG13333-PA | 1..1167 | 17..1183 | 5835 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:26:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| link-RA | 1394 | CG13333-RA | 40..1206 | 17..1183 | 5835 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:26:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 13555988..13557154 | 17..1183 | 5835 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 04:26:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 861..905 | 476..520 | 116 | 78.3 | Plus |
BO04491.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-24 09:36:32 Download gff for
BO04491.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13333-RA | 96..1262 | 17..1185 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:59:20 Download gff for
BO04491.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| link-RA | 40..1206 | 17..1185 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:28:44 Download gff for
BO04491.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| link-RA | 40..1206 | 17..1185 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:28:44 Download gff for
BO04491.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 13555988..13557154 | 17..1185 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:59:20 Download gff for
BO04491.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 9443493..9444659 | 17..1185 | 99 | | Plus |
BO04491.pep Sequence
Translation from 16 to 1201
> BO04491.pep
MIGVLMRFLWSLAMVQCIQARVSMLPRFYGQDSAVIVDINRKFPPRMDSK
LQNALYYNLPVYKLIKPTTTTTTTTTAAPTSGYPADLLNIAHNKLGLKDL
PNLEELGEMIGTDGASETIDYIRTLTGTEEGLALMKQYLDALHFEEAEEE
NVAEEQEKAEDDDDDDDDNTMGNASYDEMPQEKSTTTADPRPELSLMQRF
GDFVKQYNLWSGQVTTTTTPAPFIARPSGSFQPVFVAPPPAGLKPFRPIL
VRQPLPYHYPIPLRPVSLATTKPIQVTTTTTTTTTPAPVTKPHLNTPKLI
MQEDAEGKYSTLPPYIQQLAKMANISPQVVEIFLERQPKLAELAKRLSTL
ALSPEQTQAMDTQVLKAVQHALSNNDDLQRLIEASQALKASFLDH
BO04491.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:21:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| link-PA | 389 | CG13333-PA | 1..389 | 1..389 | 2003 | 100 | Plus |
