Clone BO04492 Report

Search the DGRC for BO04492

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:44
Well:92
Vector:pDNR-Dual
Associated Gene/Transcriptl(2)k09913-RA
Protein status:BO04492.pep: Imported from assembly
Sequenced Size:1201

Clone Sequence Records

BO04492.3prime Sequence

870 bp (681 high quality bases) assembled on 2005-12-01

> BO04492.3prime
ATGGTCTAGAAAGCTTGCTAACTTGGCGCGCTTCGGCACGCCGATGGCCT
CCAAGACACCGCAGGTCTCCAGATGCTGGAACAGCGTCTGCAGGTACTCC
TCGCGATGCCGTATATAGTGGGCGGCGTGCTGGGACCGCTCCCAGCACTT
GAAGGTAACCTTGATGTTCGCACGCTCCCAGTCCTCGCGAACGGACTGGT
TGGAGGACGGCGGACCGATGGGATCGTTGTCGGACACGAAGAACAGCGCC
GGGGCCTTGAGCAGCGTGGAGTGGAACATCTGGCTGGAGCGCATGTAGTG
GATGGTGGCCTGGTTGTGGAATGTCTTCAGGTGGTACAGCGTATAGTTGC
GCAGGGCGCTCTGCATTCGCTCGTTCCTCGGGAAGATCGACTTGGGCACG
CCCACCGGGATCTCGGTGATGTCGGCGGCGCTGTCCCACACCTGGCACAC
GAAGCGGTCCAGAATGCTACCATAGCGATCCATGTCGCGCGACATCTGCA
GCATGATCTCGCCCAGCTGGTAGGCGCCCACGGAGAAGCCATGCATCACA
ATGGGTTCGTACGACTTGTTGTTCTCCAGGAATCGAATAGTCTCGGCGGC
CACCACCTGGGATCCTTTGACCGGCCAGAGTAGCTGCCACGGCGTAATGT
GCACCACCACCACATCGAATCCCATCTCAGTGTAGATCTGGGCATACTTC
TTCAGATGCTTCTGCTTGGCCATCAGCCAGGCCATCATGAGAACCAGTGG
GTTGCCAGTGGGCTTCTTGAAGGCCAGCGTCTTGCGATCCCCCTTCACTT
GGGTCTTGGTGCTGGTGTACAGGGTCATGTTCTTGGGAATATCCTGCGAG
GATAATTACCGGCGATTGTT

BO04492.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:06:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG3082-PB 1170 l(2)k09913-RB 316..1166 870..20 4105 99.2 Minus
CG3082-PA 1170 l(2)k09913-RA 316..1166 870..20 4105 99.2 Minus
CG3082-PC 1170 l(2)k09913-RC 316..1166 870..20 4105 99.2 Minus
CG3082-PD 951 l(2)k09913-RD 97..947 870..20 4105 99.2 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:17:13
Subject Length Description Subject Range Query Range Score Percent Strand
l(2)k09913-RI 1259 CG3082-RI 85..935 870..20 4165 99.3 Minus
l(2)k09913-RH 1259 CG3082-RH 85..935 870..20 4165 99.3 Minus
l(2)k09913-RG 1305 CG3082-RG 131..981 870..20 4165 99.3 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 15:17:08
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 23070961..23071551 610..20 2955 100 Minus
2R 25286936 2R 23070625..23070900 870..595 1245 96.7 Minus
Blast to na_te.dros performed 2015-02-13 15:17:10
Subject Length Description Subject Range Query Range Score Percent Strand
gypsy6 7826 gypsy6 GYPSY6 7826bp 7000..7097 375..281 113 60.2 Minus
G5 4856 G5 G5_DM 4856bp 2677..2730 783..730 108 66.7 Minus

BO04492.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:04:12 Download gff for BO04492.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3082-PC 316..1170 18..870 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:17:52 Download gff for BO04492.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3082-PD 97..951 18..870 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:01:58 Download gff for BO04492.3prime
Subject Subject Range Query Range Percent Splice Strand
l(2)k09913-RG 131..981 20..870 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:48:07 Download gff for BO04492.3prime
Subject Subject Range Query Range Percent Splice Strand
l(2)k09913-RG 131..981 20..870 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 16:48:07 Download gff for BO04492.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 23070625..23070888 607..870 97 -> Minus
2R 23070965..23071551 20..606 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:01:58 Download gff for BO04492.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 18958148..18958411 607..870 97 -> Minus
arm_2R 18958488..18959074 20..606 100   Minus

BO04492.5prime Sequence

750 bp (656 high quality bases) assembled on 2005-12-01

> BO04492.5prime
GAAGTTATCACTCGACATGGCTGCGCACTTTTTTCGCACTGCATTTTACG
CAACGGCGGCCAGAAAATCGATGAGTCTGCCCTTCGCCGGCCGGACAGCC
GCAACTCTAGCCGTGGGCCTATCATTCGGTGCGCAAAATAGCCGGGCAGC
CGTGCCGTACGAGAATGCCTACGCGGACAGCTTCTTCGGGGGCTGCCAGA
CGCAGGGACTGCTCCAGCGGATTCCCCAGACCGGATACATCCAGCCCCCG
CTGATGCGGAACTTCTCGAGCCTGCAGACGGGCCACCAGCAGCAGCAGCA
GCCGGCTCCAAATAGTGCCATGGCGCCGTCGAACAATCGCCGGTACTTAT
CCTCGCAGGATATTACCAAGAACATGACCCTGTACACCAGCACCAAGACC
CAAGTTGAGGTGGATCCCAAGACGCTGGCCTTCAAGAAGCCCACTGGCAA
CCCACTGGTTCTCATGATGGCCTGGCTGATGGCCAAGCAGAAGCATCTGA
AGAAGTATGCCCAGATCTACACTGAGATGGGATTCGATGTGGTGGTGGTG
CACATTACGCCGTGGCAGCTACTCTGGCCGGTCAAAGGATCCCAGGTGGT
GGCCGCCGAGACTATTCGATTCCTGGAGAACAACAAGTCGTACGAACCCA
TTGTGATGCATGGCTTCTCCGTGGGCGCCTACCAGCTGGGCGAGATCATG
CTGCAGATGTCGCGCGACATGGATCGCTATGGTAGCATTCTGGACCGCTT

BO04492.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:06:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG3082-PB 1170 l(2)k09913-RB 1..734 17..750 3670 100 Plus
CG3082-PA 1170 l(2)k09913-RA 1..734 17..750 3670 100 Plus
CG3082-PC 1170 l(2)k09913-RC 1..734 17..750 3670 100 Plus
CG3082-PD 951 l(2)k09913-RD 78..515 313..750 2190 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:23:09
Subject Length Description Subject Range Query Range Score Percent Strand
l(2)k09913-RE 1590 CG3082-RE 101..834 17..750 3670 100 Plus
l(2)k09913-RC 1944 CG3082-RC 455..1188 17..750 3670 100 Plus
l(2)k09913-RA 1881 CG3082-RA 392..1125 17..750 3670 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:22:59
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 23070607..23070900 314..607 1425 99 Plus
2R 25286936 2R 23067946..23068128 131..313 915 100 Plus
2R 25286936 2R 23070961..23071119 592..750 795 100 Plus
2R 25286936 2R 23067727..23067841 17..131 575 100 Plus
Blast to na_te.dros performed 2015-02-12 06:23:04
Subject Length Description Subject Range Query Range Score Percent Strand
G5 4856 G5 G5_DM 4856bp 2673..2730 415..472 110 65.5 Plus

BO04492.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:04:13 Download gff for BO04492.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3082-PB 1..734 17..750 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:17:53 Download gff for BO04492.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3082-PC 1..734 17..750 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:26:36 Download gff for BO04492.5prime
Subject Subject Range Query Range Percent Splice Strand
l(2)k09913-RA 385..1125 9..750 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:11:58 Download gff for BO04492.5prime
Subject Subject Range Query Range Percent Splice Strand
l(2)k09913-RA 385..1125 9..750 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:11:58 Download gff for BO04492.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 23070607..23070888 314..595 100 -> Plus
2R 23070965..23071119 596..750 100   Plus
2R 23067720..23067841 9..131 97 -> Plus
2R 23067947..23068128 132..313 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:26:36 Download gff for BO04492.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 18955243..18955364 9..131 97 -> Plus
arm_2R 18955470..18955651 132..313 100 -> Plus
arm_2R 18958130..18958411 314..595 100 -> Plus
arm_2R 18958488..18958642 596..750 100   Plus

BO04492.complete Sequence

1201 bp assembled on 2008-08-14

GenBank Submission: KX796816

> BO04492.complete
GAAGTTATCAGTCGACATGGCTGCGCACTTTTTTCGCACTGCATTTTACG
CAACGGCGGCCAGAAAATCGATGAGTCTGCCCTTCGCCGGCCGGACAGCC
GCAACTCTAGCCGTGGGCCTATCATTCGGTGCGCAAAATAGCCGGGCAGC
CGTGCCGTACGAGAATGCCTACGCGGACAGCTTCTTCGGGGGCTGCCAGA
CGCAGGGACTGCTCCAGCGGATTCCCCAGACCGGATACATCCAGCCCCCG
CTGATGCGGAACTTCTCGAGCCTGCAGACGGGCCACCAGCAGCAGCAGCA
GCCGGCTCCAAATAGTGCCATGGCGCCGTCGAACAATCGCCGGTACTTAT
CCTCGCAGGATATTACCAAGAACATGACCCTGTACACCAGCACCAAGACC
CAAGTTGAGGTGGATCCCAAGACGCTGGCCTTCAAGAAGCCCACTGGCAA
CCCACTGGTTCTCATGATGGCCTGGCTGATGGCCAAGCAGAAGCATCTGA
AGAAGTATGCCCAGATCTACACTGAGATGGGATTCGATGTGGTGGTGGTG
CACATTACGCCGTGGCAGCTACTCTGGCCGGTCAAAGGATCCCAGGTGGT
GGCCGCCGAGACTATTCGATTCCTGGAGAACAACAAGTCGTACGAACCCA
TTGTGATGCATGGCTTCTCCGTGGGCGCCTACCAGCTGGGCGAGATCATG
CTGCAGATGTCGCGCGACATGGATCGCTATGGTAGCATTCTGGACCGCTT
CGTGTGCCAGGTGTGGGACAGCGCCGCCGACATCACCGAGATCCCGGTGG
GCGTGCCCAAGTCGATCTTCCCGAGGAACGAGCGAATGCAGAGCGCCCTG
CGCAACTATACGCTGTACCACCTGAAGACATTCCACAACCAGGCCACCAT
CCACTACATGCGCTCCAGCCAGATGTTCCACTCCACGCTGCTCAAGGCCC
CGGCGCTGTTCTTCGTGTCCGACAACGATCCCATCGGTCCGCCGTCCTCC
AACCAGTCCGTTCGCGAGGACTGGGAGCGTGCGAACATCAAGGTTACCTT
CAAGTGCTGGGAGCGGTCCCAGCACGCCGCCCACTATATACGGCATCGCG
AGGAGTACCTGCAGACGCTGTTCCAGCATCTGGAGACCTGCGGTGTCTTG
GAGGCCATCGGCGTGCCGAAGCGCGCCAAGTTAGCAAGCTTTCTAGACCA
T

BO04492.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:57:50
Subject Length Description Subject Range Query Range Score Percent Strand
l(2)k09913-RE 1170 CG3082-PE 1..1166 17..1182 5830 100 Plus
l(2)k09913-RC 1170 CG3082-PC 1..1166 17..1182 5830 100 Plus
l(2)k09913-RA 1170 CG3082-PA 1..1166 17..1182 5830 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:57:52
Subject Length Description Subject Range Query Range Score Percent Strand
l(2)k09913-RE 1590 CG3082-RE 101..1266 17..1182 5830 100 Plus
l(2)k09913-RC 1944 CG3082-RC 455..1620 17..1182 5830 100 Plus
l(2)k09913-RA 1881 CG3082-RA 392..1557 17..1182 5830 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:57:47
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 23070961..23071551 592..1182 2955 100 Plus
2R 25286936 2R 23070607..23070900 314..607 1425 99 Plus
2R 25286936 2R 23067946..23068128 131..313 915 100 Plus
2R 25286936 2R 23067727..23067841 17..131 575 100 Plus
Blast to na_te.dros performed 2014-11-26 16:57:49
Subject Length Description Subject Range Query Range Score Percent Strand
gypsy6 7826 gypsy6 GYPSY6 7826bp 7000..7097 827..921 113 60.2 Plus
G5 4856 G5 G5_DM 4856bp 2673..2730 415..472 110 65.5 Plus

BO04492.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:39:53 Download gff for BO04492.complete
Subject Subject Range Query Range Percent Splice Strand
l(2)k09913-RC 467..1639 9..1182 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:14:13 Download gff for BO04492.complete
Subject Subject Range Query Range Percent Splice Strand
l(2)k09913-RA 392..1558 17..1185 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:10:07 Download gff for BO04492.complete
Subject Subject Range Query Range Percent Splice Strand
l(2)k09913-RC 474..1640 17..1185 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:31:42 Download gff for BO04492.complete
Subject Subject Range Query Range Percent Splice Strand
l(2)k09913-RA 392..1558 17..1185 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:31:42 Download gff for BO04492.complete
Subject Subject Range Query Range Percent Splice Strand
2R 23067727..23067841 17..131 100 -> Plus
2R 23067947..23068128 132..313 100 -> Plus
2R 23070607..23070888 314..595 100 -> Plus
2R 23070965..23071552 596..1185 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:14:13 Download gff for BO04492.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 18955250..18955364 17..131 100 -> Plus
arm_2R 18955470..18955651 132..313 100 -> Plus
arm_2R 18958130..18958411 314..595 100 -> Plus
arm_2R 18958488..18959075 596..1185 99   Plus

BO04492.pep Sequence

Translation from 16 to 1201

> BO04492.pep
MAAHFFRTAFYATAARKSMSLPFAGRTAATLAVGLSFGAQNSRAAVPYEN
AYADSFFGGCQTQGLLQRIPQTGYIQPPLMRNFSSLQTGHQQQQQPAPNS
AMAPSNNRRYLSSQDITKNMTLYTSTKTQVEVDPKTLAFKKPTGNPLVLM
MAWLMAKQKHLKKYAQIYTEMGFDVVVVHITPWQLLWPVKGSQVVAAETI
RFLENNKSYEPIVMHGFSVGAYQLGEIMLQMSRDMDRYGSILDRFVCQVW
DSAADITEIPVGVPKSIFPRNERMQSALRNYTLYHLKTFHNQATIHYMRS
SQMFHSTLLKAPALFFVSDNDPIGPPSSNQSVREDWERANIKVTFKCWER
SQHAAHYIRHREEYLQTLFQHLETCGVLEAIGVPKRAKLASFLDH

BO04492.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:48:34
Subject Length Description Subject Range Query Range Score Percent Strand
l(2)k09913-PE 389 CG3082-PE 1..389 1..389 2044 100 Plus
l(2)k09913-PC 389 CG3082-PC 1..389 1..389 2044 100 Plus
l(2)k09913-PA 389 CG3082-PA 1..389 1..389 2044 100 Plus
l(2)k09913-PB 389 CG3082-PB 1..389 1..389 2044 100 Plus
l(2)k09913-PF 388 CG3082-PF 1..388 1..389 2026 99.7 Plus