Clone Sequence Records
BO04492.3prime Sequence
870 bp (681 high quality bases) assembled on 2005-12-01
> BO04492.3prime
ATGGTCTAGAAAGCTTGCTAACTTGGCGCGCTTCGGCACGCCGATGGCCT
CCAAGACACCGCAGGTCTCCAGATGCTGGAACAGCGTCTGCAGGTACTCC
TCGCGATGCCGTATATAGTGGGCGGCGTGCTGGGACCGCTCCCAGCACTT
GAAGGTAACCTTGATGTTCGCACGCTCCCAGTCCTCGCGAACGGACTGGT
TGGAGGACGGCGGACCGATGGGATCGTTGTCGGACACGAAGAACAGCGCC
GGGGCCTTGAGCAGCGTGGAGTGGAACATCTGGCTGGAGCGCATGTAGTG
GATGGTGGCCTGGTTGTGGAATGTCTTCAGGTGGTACAGCGTATAGTTGC
GCAGGGCGCTCTGCATTCGCTCGTTCCTCGGGAAGATCGACTTGGGCACG
CCCACCGGGATCTCGGTGATGTCGGCGGCGCTGTCCCACACCTGGCACAC
GAAGCGGTCCAGAATGCTACCATAGCGATCCATGTCGCGCGACATCTGCA
GCATGATCTCGCCCAGCTGGTAGGCGCCCACGGAGAAGCCATGCATCACA
ATGGGTTCGTACGACTTGTTGTTCTCCAGGAATCGAATAGTCTCGGCGGC
CACCACCTGGGATCCTTTGACCGGCCAGAGTAGCTGCCACGGCGTAATGT
GCACCACCACCACATCGAATCCCATCTCAGTGTAGATCTGGGCATACTTC
TTCAGATGCTTCTGCTTGGCCATCAGCCAGGCCATCATGAGAACCAGTGG
GTTGCCAGTGGGCTTCTTGAAGGCCAGCGTCTTGCGATCCCCCTTCACTT
GGGTCTTGGTGCTGGTGTACAGGGTCATGTTCTTGGGAATATCCTGCGAG
GATAATTACCGGCGATTGTT
BO04492.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:06:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3082-PB | 1170 | l(2)k09913-RB | 316..1166 | 870..20 | 4105 | 99.2 | Minus |
CG3082-PA | 1170 | l(2)k09913-RA | 316..1166 | 870..20 | 4105 | 99.2 | Minus |
CG3082-PC | 1170 | l(2)k09913-RC | 316..1166 | 870..20 | 4105 | 99.2 | Minus |
CG3082-PD | 951 | l(2)k09913-RD | 97..947 | 870..20 | 4105 | 99.2 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:17:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
l(2)k09913-RI | 1259 | CG3082-RI | 85..935 | 870..20 | 4165 | 99.3 | Minus |
l(2)k09913-RH | 1259 | CG3082-RH | 85..935 | 870..20 | 4165 | 99.3 | Minus |
l(2)k09913-RG | 1305 | CG3082-RG | 131..981 | 870..20 | 4165 | 99.3 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 15:17:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 23070961..23071551 | 610..20 | 2955 | 100 | Minus |
2R | 25286936 | 2R | 23070625..23070900 | 870..595 | 1245 | 96.7 | Minus |
Blast to na_te.dros performed 2015-02-13 15:17:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
gypsy6 | 7826 | gypsy6 GYPSY6 7826bp | 7000..7097 | 375..281 | 113 | 60.2 | Minus |
G5 | 4856 | G5 G5_DM 4856bp | 2677..2730 | 783..730 | 108 | 66.7 | Minus |
BO04492.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:04:12 Download gff for
BO04492.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3082-PC | 316..1170 | 18..870 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:17:52 Download gff for
BO04492.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3082-PD | 97..951 | 18..870 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:01:58 Download gff for
BO04492.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(2)k09913-RG | 131..981 | 20..870 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:48:07 Download gff for
BO04492.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(2)k09913-RG | 131..981 | 20..870 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 16:48:07 Download gff for
BO04492.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 23070625..23070888 | 607..870 | 97 | -> | Minus |
2R | 23070965..23071551 | 20..606 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:01:58 Download gff for
BO04492.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 18958148..18958411 | 607..870 | 97 | -> | Minus |
arm_2R | 18958488..18959074 | 20..606 | 100 | | Minus |
BO04492.5prime Sequence
750 bp (656 high quality bases) assembled on 2005-12-01
> BO04492.5prime
GAAGTTATCACTCGACATGGCTGCGCACTTTTTTCGCACTGCATTTTACG
CAACGGCGGCCAGAAAATCGATGAGTCTGCCCTTCGCCGGCCGGACAGCC
GCAACTCTAGCCGTGGGCCTATCATTCGGTGCGCAAAATAGCCGGGCAGC
CGTGCCGTACGAGAATGCCTACGCGGACAGCTTCTTCGGGGGCTGCCAGA
CGCAGGGACTGCTCCAGCGGATTCCCCAGACCGGATACATCCAGCCCCCG
CTGATGCGGAACTTCTCGAGCCTGCAGACGGGCCACCAGCAGCAGCAGCA
GCCGGCTCCAAATAGTGCCATGGCGCCGTCGAACAATCGCCGGTACTTAT
CCTCGCAGGATATTACCAAGAACATGACCCTGTACACCAGCACCAAGACC
CAAGTTGAGGTGGATCCCAAGACGCTGGCCTTCAAGAAGCCCACTGGCAA
CCCACTGGTTCTCATGATGGCCTGGCTGATGGCCAAGCAGAAGCATCTGA
AGAAGTATGCCCAGATCTACACTGAGATGGGATTCGATGTGGTGGTGGTG
CACATTACGCCGTGGCAGCTACTCTGGCCGGTCAAAGGATCCCAGGTGGT
GGCCGCCGAGACTATTCGATTCCTGGAGAACAACAAGTCGTACGAACCCA
TTGTGATGCATGGCTTCTCCGTGGGCGCCTACCAGCTGGGCGAGATCATG
CTGCAGATGTCGCGCGACATGGATCGCTATGGTAGCATTCTGGACCGCTT
BO04492.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:06:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3082-PB | 1170 | l(2)k09913-RB | 1..734 | 17..750 | 3670 | 100 | Plus |
CG3082-PA | 1170 | l(2)k09913-RA | 1..734 | 17..750 | 3670 | 100 | Plus |
CG3082-PC | 1170 | l(2)k09913-RC | 1..734 | 17..750 | 3670 | 100 | Plus |
CG3082-PD | 951 | l(2)k09913-RD | 78..515 | 313..750 | 2190 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:23:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
l(2)k09913-RE | 1590 | CG3082-RE | 101..834 | 17..750 | 3670 | 100 | Plus |
l(2)k09913-RC | 1944 | CG3082-RC | 455..1188 | 17..750 | 3670 | 100 | Plus |
l(2)k09913-RA | 1881 | CG3082-RA | 392..1125 | 17..750 | 3670 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:22:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 23070607..23070900 | 314..607 | 1425 | 99 | Plus |
2R | 25286936 | 2R | 23067946..23068128 | 131..313 | 915 | 100 | Plus |
2R | 25286936 | 2R | 23070961..23071119 | 592..750 | 795 | 100 | Plus |
2R | 25286936 | 2R | 23067727..23067841 | 17..131 | 575 | 100 | Plus |
Blast to na_te.dros performed 2015-02-12 06:23:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
G5 | 4856 | G5 G5_DM 4856bp | 2673..2730 | 415..472 | 110 | 65.5 | Plus |
BO04492.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:04:13 Download gff for
BO04492.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3082-PB | 1..734 | 17..750 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:17:53 Download gff for
BO04492.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3082-PC | 1..734 | 17..750 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:26:36 Download gff for
BO04492.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(2)k09913-RA | 385..1125 | 9..750 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:11:58 Download gff for
BO04492.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(2)k09913-RA | 385..1125 | 9..750 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:11:58 Download gff for
BO04492.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 23070607..23070888 | 314..595 | 100 | -> | Plus |
2R | 23070965..23071119 | 596..750 | 100 | | Plus |
2R | 23067720..23067841 | 9..131 | 97 | -> | Plus |
2R | 23067947..23068128 | 132..313 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:26:36 Download gff for
BO04492.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 18955243..18955364 | 9..131 | 97 | -> | Plus |
arm_2R | 18955470..18955651 | 132..313 | 100 | -> | Plus |
arm_2R | 18958130..18958411 | 314..595 | 100 | -> | Plus |
arm_2R | 18958488..18958642 | 596..750 | 100 | | Plus |
BO04492.complete Sequence
1201 bp assembled on 2008-08-14
GenBank Submission: KX796816
> BO04492.complete
GAAGTTATCAGTCGACATGGCTGCGCACTTTTTTCGCACTGCATTTTACG
CAACGGCGGCCAGAAAATCGATGAGTCTGCCCTTCGCCGGCCGGACAGCC
GCAACTCTAGCCGTGGGCCTATCATTCGGTGCGCAAAATAGCCGGGCAGC
CGTGCCGTACGAGAATGCCTACGCGGACAGCTTCTTCGGGGGCTGCCAGA
CGCAGGGACTGCTCCAGCGGATTCCCCAGACCGGATACATCCAGCCCCCG
CTGATGCGGAACTTCTCGAGCCTGCAGACGGGCCACCAGCAGCAGCAGCA
GCCGGCTCCAAATAGTGCCATGGCGCCGTCGAACAATCGCCGGTACTTAT
CCTCGCAGGATATTACCAAGAACATGACCCTGTACACCAGCACCAAGACC
CAAGTTGAGGTGGATCCCAAGACGCTGGCCTTCAAGAAGCCCACTGGCAA
CCCACTGGTTCTCATGATGGCCTGGCTGATGGCCAAGCAGAAGCATCTGA
AGAAGTATGCCCAGATCTACACTGAGATGGGATTCGATGTGGTGGTGGTG
CACATTACGCCGTGGCAGCTACTCTGGCCGGTCAAAGGATCCCAGGTGGT
GGCCGCCGAGACTATTCGATTCCTGGAGAACAACAAGTCGTACGAACCCA
TTGTGATGCATGGCTTCTCCGTGGGCGCCTACCAGCTGGGCGAGATCATG
CTGCAGATGTCGCGCGACATGGATCGCTATGGTAGCATTCTGGACCGCTT
CGTGTGCCAGGTGTGGGACAGCGCCGCCGACATCACCGAGATCCCGGTGG
GCGTGCCCAAGTCGATCTTCCCGAGGAACGAGCGAATGCAGAGCGCCCTG
CGCAACTATACGCTGTACCACCTGAAGACATTCCACAACCAGGCCACCAT
CCACTACATGCGCTCCAGCCAGATGTTCCACTCCACGCTGCTCAAGGCCC
CGGCGCTGTTCTTCGTGTCCGACAACGATCCCATCGGTCCGCCGTCCTCC
AACCAGTCCGTTCGCGAGGACTGGGAGCGTGCGAACATCAAGGTTACCTT
CAAGTGCTGGGAGCGGTCCCAGCACGCCGCCCACTATATACGGCATCGCG
AGGAGTACCTGCAGACGCTGTTCCAGCATCTGGAGACCTGCGGTGTCTTG
GAGGCCATCGGCGTGCCGAAGCGCGCCAAGTTAGCAAGCTTTCTAGACCA
T
BO04492.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:57:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
l(2)k09913-RE | 1170 | CG3082-PE | 1..1166 | 17..1182 | 5830 | 100 | Plus |
l(2)k09913-RC | 1170 | CG3082-PC | 1..1166 | 17..1182 | 5830 | 100 | Plus |
l(2)k09913-RA | 1170 | CG3082-PA | 1..1166 | 17..1182 | 5830 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:57:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
l(2)k09913-RE | 1590 | CG3082-RE | 101..1266 | 17..1182 | 5830 | 100 | Plus |
l(2)k09913-RC | 1944 | CG3082-RC | 455..1620 | 17..1182 | 5830 | 100 | Plus |
l(2)k09913-RA | 1881 | CG3082-RA | 392..1557 | 17..1182 | 5830 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:57:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 23070961..23071551 | 592..1182 | 2955 | 100 | Plus |
2R | 25286936 | 2R | 23070607..23070900 | 314..607 | 1425 | 99 | Plus |
2R | 25286936 | 2R | 23067946..23068128 | 131..313 | 915 | 100 | Plus |
2R | 25286936 | 2R | 23067727..23067841 | 17..131 | 575 | 100 | Plus |
Blast to na_te.dros performed 2014-11-26 16:57:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
gypsy6 | 7826 | gypsy6 GYPSY6 7826bp | 7000..7097 | 827..921 | 113 | 60.2 | Plus |
G5 | 4856 | G5 G5_DM 4856bp | 2673..2730 | 415..472 | 110 | 65.5 | Plus |
BO04492.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:39:53 Download gff for
BO04492.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(2)k09913-RC | 467..1639 | 9..1182 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:14:13 Download gff for
BO04492.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(2)k09913-RA | 392..1558 | 17..1185 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:10:07 Download gff for
BO04492.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(2)k09913-RC | 474..1640 | 17..1185 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:31:42 Download gff for
BO04492.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(2)k09913-RA | 392..1558 | 17..1185 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:31:42 Download gff for
BO04492.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 23067727..23067841 | 17..131 | 100 | -> | Plus |
2R | 23067947..23068128 | 132..313 | 100 | -> | Plus |
2R | 23070607..23070888 | 314..595 | 100 | -> | Plus |
2R | 23070965..23071552 | 596..1185 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:14:13 Download gff for
BO04492.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 18955250..18955364 | 17..131 | 100 | -> | Plus |
arm_2R | 18955470..18955651 | 132..313 | 100 | -> | Plus |
arm_2R | 18958130..18958411 | 314..595 | 100 | -> | Plus |
arm_2R | 18958488..18959075 | 596..1185 | 99 | | Plus |
BO04492.pep Sequence
Translation from 16 to 1201
> BO04492.pep
MAAHFFRTAFYATAARKSMSLPFAGRTAATLAVGLSFGAQNSRAAVPYEN
AYADSFFGGCQTQGLLQRIPQTGYIQPPLMRNFSSLQTGHQQQQQPAPNS
AMAPSNNRRYLSSQDITKNMTLYTSTKTQVEVDPKTLAFKKPTGNPLVLM
MAWLMAKQKHLKKYAQIYTEMGFDVVVVHITPWQLLWPVKGSQVVAAETI
RFLENNKSYEPIVMHGFSVGAYQLGEIMLQMSRDMDRYGSILDRFVCQVW
DSAADITEIPVGVPKSIFPRNERMQSALRNYTLYHLKTFHNQATIHYMRS
SQMFHSTLLKAPALFFVSDNDPIGPPSSNQSVREDWERANIKVTFKCWER
SQHAAHYIRHREEYLQTLFQHLETCGVLEAIGVPKRAKLASFLDH
BO04492.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:48:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
l(2)k09913-PE | 389 | CG3082-PE | 1..389 | 1..389 | 2044 | 100 | Plus |
l(2)k09913-PC | 389 | CG3082-PC | 1..389 | 1..389 | 2044 | 100 | Plus |
l(2)k09913-PA | 389 | CG3082-PA | 1..389 | 1..389 | 2044 | 100 | Plus |
l(2)k09913-PB | 389 | CG3082-PB | 1..389 | 1..389 | 2044 | 100 | Plus |
l(2)k09913-PF | 388 | CG3082-PF | 1..388 | 1..389 | 2026 | 99.7 | Plus |