Clone BO04493 Report

Search the DGRC for BO04493

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:44
Well:93
Vector:pDNR-Dual
Associated Gene/TranscriptKlp61F-RA
Protein status:BO04493.pep: Imported from assembly
Sequenced Size:3232

Clone Sequence Records

BO04493.3prime Sequence

864 bp (757 high quality bases) assembled on 2005-12-01

> BO04493.3prime
ATGGTCTAGAAAGCTTGCGGCTACGTTTTCTTTGTTGTGCCTGACGAAGG
CGGGAGAACCTCGAGGTGACGTTTTACTGGGTGTCAGGGAACGTGACAAC
GAGCTGCTGCGTTTTCCACCAGTAGCTACGGGTGGCTTTAGGGCGTTCGA
ATTGGAATTGCGGGTGGTGCCGCACCCACGCTTCACGGTGACACCATCCA
CGGGCTCAATGGGCGTGGAGTTCATTATGGTTTCAGTTTCGGACAGCTCC
TGGACGGAATGCATGGAGACGTCATGCTCACCCTCGCTGCACTCATCTAT
AGTGGCCGTGGTGTCCAGATCTGACCAGTCCAGCTCTTGGCGATAGCGCC
TCACAATTTCCTGATGTGGCGACGTGGCCACGAGGGTGCGCGGATAAACG
AAATCCCTTTTGGAGGGCGTGGTCCCAGTTGGGGCGTACGTTTTCAACTC
CGACTGTTGGAAGCGTACAAGCTCTTGCTCGCAAATTTGCAGCTGCTGCC
GTTGGTGTTCAGCATGCTCCGAGAACTGCCGGTTCGACTCTTGGACAAGA
TCAGTGGCTACAGTGGCATGGCCTATGAATCGCTGTCTGTCCTCGGTGAT
AAGCTGCTGCCTTGCATCCACCATCTGTTCCAAGTTAACTTCGGTTTTCT
CCTGCACCGCCTCAAGCTGCTGCTTGCTCTCTTGGCAAATAATTTCCACC
TGATTGTGGTGCACTCGAACGGAACCAACATTCTCATTTGTTTCCTTTTC
GTATTTCTGGTTGAGATTCTTCATGTGCACCTGAAGCATCGAACAGTTGG
CAACGCCTTGGTCCAGACAAAGCATTCCCGCCTCCATTTGGCTGGTGAGC
TCCGCTTGTGCGGA

BO04493.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:06:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG9191-PA 3201 Klp61F-RA 2353..3198 864..19 4230 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 18:35:50
Subject Length Description Subject Range Query Range Score Percent Strand
Klp61F-RA 3871 CG9191-RA 2623..3468 864..19 4230 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 18:35:45
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 1242392..1242964 292..864 2865 100 Plus
3L 28110227 3L 1242076..1242329 40..293 1270 100 Plus
Blast to na_te.dros performed on 2015-02-09 18:35:48 has no hits.

BO04493.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:04:14 Download gff for BO04493.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9191-PA 2354..3201 16..863 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:17:55 Download gff for BO04493.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9191-PA 2354..3201 16..863 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 03:58:53 Download gff for BO04493.3prime
Subject Subject Range Query Range Percent Splice Strand
Klp61F-RA 2624..3468 19..863 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 21:12:55 Download gff for BO04493.3prime
Subject Subject Range Query Range Percent Splice Strand
Klp61F-RA 2624..3468 19..863 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 21:12:55 Download gff for BO04493.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 1241971..1241991 19..39 100 <- Plus
3L 1242076..1242327 40..291 100 <- Plus
3L 1242392..1242963 292..863 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 03:58:53 Download gff for BO04493.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1241971..1241991 19..39 100 <- Plus
arm_3L 1242076..1242327 40..291 100 <- Plus
arm_3L 1242392..1242963 292..863 100   Plus

BO04493.5prime Sequence

792 bp (755 high quality bases) assembled on 2005-12-01

> BO04493.5prime
GAAGTTATCAGTCGACATGGACATATCTGGTGGGAATACGTCGCGCCAGC
CCCAAAAGAAGTCCAACCAAAACATCCAGGTGTATGTGCGCGTCAGACCC
CTTAATTCTCGGGAACGTTGCATCCGCTCGGCCGAAGTCGTGGATGTGGT
CGGACCACGGGAAGTGGTCACCCGCCACACGCTGGACTCCAAGCTCACCA
AGAAGTTCACCTTTGACCGCAGTTTTGGCCCCGAGTCCAAGCAGTGCGAT
GTCTACTCCGTCGTGGTGTCTCCGCTGATCGAGGAGGTCCTCAATGGCTA
TAACTGCACGGTGTTTGCTTATGGCCAGACGGGCACAGGGAAGACCCACA
CCATGGTGGGCAACGAGACTGCCGAACTGAAATCCTCCTGGGAAGATGAC
TCTGACATTGGCATCATACCGCGCGCTCTGAGTCACCTTTTCGATGAGCT
GCGCATGATGGAGGTGGAGTACACTATGCGCATTTCCTACTTGGAACTGT
ACAATGAGGAGCTGTGCGATCTACTGTCCACCGATGACACCACCAAGATA
CGCATTTTCGATGACAGCACCAAGAAGGGATCGGTGATTATCCAGGGCCT
GGAGGAGATACCAGTGCACAGCAAGGATGATGTGTACAAGCTGCTGGAGA
AGGGAAAGGAGCGTCGCAAAACAGCCACTACGCTGATGAATGCACAGTCC
TCACGCTCCCACACTGTATTTTCTATAGTTGTGCACATCAGGGAGAATGG
CATCGAAGGAGAGGACATGCTGAAAATCGGTAAACTGAATCT

BO04493.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:06:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG9191-PA 3201 Klp61F-RA 1..776 17..792 3880 100 Plus
CG32318-PA 495 CG32318-RA 1..319 17..335 1595 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 19:25:28
Subject Length Description Subject Range Query Range Score Percent Strand
Klp61F-RA 3871 CG9191-RA 271..1046 17..792 3880 100 Plus
CG32318-RA 785 CG32318-RA 291..609 17..335 1595 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 19:25:21
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 1244606..1245000 792..398 1975 100 Minus
3L 28110227 3L 1245193..1245496 398..95 1520 100 Minus
3L 28110227 3L 1246249..1246489 335..95 1205 100 Minus
3L 28110227 3L 1245561..1245640 96..17 400 100 Minus
3L 28110227 3L 1246554..1246633 96..17 400 100 Minus
Blast to na_te.dros performed on 2015-02-04 19:25:25 has no hits.

BO04493.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:04:15 Download gff for BO04493.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9191-PA 1..776 17..792 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:17:56 Download gff for BO04493.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9191-PA 1..776 17..792 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:16:58 Download gff for BO04493.5prime
Subject Subject Range Query Range Percent Splice Strand
Klp61F-RA 266..1046 12..792 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:32:20 Download gff for BO04493.5prime
Subject Subject Range Query Range Percent Splice Strand
Klp61F-RA 266..1046 12..792 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 21:32:20 Download gff for BO04493.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 1244606..1245000 398..792 100 <- Minus
3L 1245194..1245494 97..397 100 <- Minus
3L 1245561..1245645 12..96 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:16:58 Download gff for BO04493.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1244606..1245000 398..792 100 <- Minus
arm_3L 1245194..1245494 97..397 100 <- Minus
arm_3L 1245561..1245645 12..96 97   Minus

BO04493.complete Sequence

3232 bp assembled on 2008-08-14

GenBank Submission: FJ629784

> BO04493.complete
GAAGTTATCAGTCGACATGGACATATCTGGTGGGAATACGTCGCGCCAGC
CCCAAAAGAAGTCCAACCAAAACATCCAGGTGTATGTGCGCGTCAGACCC
CTTAATTCTCGGGAACGTTGCATCCGCTCGGCCGAAGTCGTGGATGTGGT
CGGACCACGGGAAGTGGTCACCCGCCACACGCTGGACTCCAAGCTCACCA
AGAAGTTCACCTTTGACCGCAGTTTTGGCCCCGAGTCCAAGCAGTGCGAT
GTCTACTCCGTCGTGGTGTCTCCGCTGATCGAGGAGGTCCTCAATGGCTA
TAACTGCACGGTGTTTGCTTATGGCCAGACGGGCACAGGGAAGACCCACA
CCATGGTGGGCAACGAGACTGCCGAACTGAAATCCTCCTGGGAAGATGAC
TCTGACATTGGCATCATACCGCGCGCTCTGAGTCACCTTTTCGATGAGCT
GCGCATGATGGAGGTGGAGTACACTATGCGCATTTCCTACTTGGAACTGT
ACAATGAGGAGCTGTGCGATCTACTGTCCACCGATGACACCACCAAGATA
CGCATTTTCGATGACAGCACCAAGAAGGGATCGGTGATTATCCAGGGCCT
GGAGGAGATACCAGTGCACAGCAAGGATGATGTGTACAAGCTGCTGGAGA
AGGGAAAGGAGCGTCGCAAAACAGCCACTACGCTGATGAATGCACAGTCC
TCACGCTCCCACACTGTATTTTCTATAGTTGTGCACATCAGGGAGAATGG
CATCGAAGGAGAGGACATGCTGAAAATCGGTAAACTGAATCTGGTGGATC
TGGCGGGCAGTGAAAATGTTTCCAAGGCTGGGAATGAAAAGGGAATACGT
GTGCGGGAAACAGTAAACATCAATCAGAGCCTCTTGACTCTCGGTAGAGT
AATTACCGCTTTGGTCGATCGCGCTCCTCACGTTCCATATCGTGAATCAA
AGCTGACTAGACTGCTGCAAGAATCTCTGGGTGGCAGGACCAAGACCTCC
ATCATAGCCACCATATCGCCGGGCCACAAGGACATCGAGGAGACCCTGAG
CACTTTAGAGTACGCTCATCGCGCCAAGAACATTCAAAACAAGCCCGAAG
TCAATCAGAAGCTGACCAAAAAGACTGTGCTCAAGGAATACACCGAAGAA
ATCGACAAGCTTAAAAGAGATCTTATGGCGGCCAGGGACAAGAATGGCAT
CTATTTGGCCGAGGAAACCTACGGGGAGATAACTTTGAAGTTAGAATCCC
AGAACCGCGAGCTTAACGAGAAAATGCTGCTGCTCAAGGCTTTGAAGGAC
GAACTCCAGAACAAGGAGAAGATCTTCAGTGAGGTGAGCATGAGTCTTGT
GGAGAAAACGCAGGAGCTGAAAAAGACCGAGGAGAACCTACTGAACACGA
AGGGTACTTTGCTCCTGACCAAGAAAGTGCTGACCAAGACCAAGCGACGA
TACAAGGAAAAAAAGGAGTTGGTGGCCTCGCATATGAAAACGGAGCAGGT
TTTGACCACACAGGCTCAGGAGATCCTAGCCGCTGCTGATCTGGCCACTG
ATGATACTCATCAGCTGCACGGAACCATCGAAAGAAGGCGTGAGTTGGAT
GAGAAGATTCGCCGATCTTGCGATCAGTTCAAAGATCGTATGCAGGATAA
TTTGGAAATGATCGGTGGCAGCCTGAACTTGTATCAGGATCAGCAGGCAG
CCCTCAAGGAGCAGCTAAGCCAGGAAATGGTAAACTCGAGCTATGTGAGC
CAACGCCTTGCACTAAATTCCAGCAAAAGCATCGAAATGCTTAAGGAGAT
GTGTGCCCAATCGCTACAGGATCAGACCAACCTCCATAATAAGTTAATAG
GAGAAGTCATGAAGATCAGCGATCAGCACTCTCAGGCATTTGTCGCCAAG
CTGATGGAGCAGATGCAGCAGCAACAGCTTTTGATGAGCAAAGAAATTCA
GACTAACCTGCAGGTGATCGAGGAAAACAACCAGCGGCACAAAGCCATGC
TGGACTCTATGCAGGAAAAGTTCGCCACCATAATTGACAGCAGCTTACAG
TCTGTGGAAGAACATGCGAAGCAAATGCACAAGAAGTTGGAGCAGCTCGG
GGCAATGAGTTTGCCAGATGCGGAGGAACTGCAGAATCTTCAAGAGGAGT
TGGCGAATGAACGAGCTCTGGCGCAGCAGGAGGATGCTCTCCTTGAGTCC
ATGATGATGCAGATGGAACAGATCAAGAACTTGCGGTCCAAAAATAGCAT
CAGCATGTCCGTACATCTTAATAAGATGGAGGAGAGTCGACTGACGAGAA
ATCATCGCATCGATGATATTAAGTCTGGTATCCAAGACTACCAAAAGTTG
GGCATAGAAGCTTCCCAATCCGCACAAGCGGAGCTCACCAGCCAAATGGA
GGCGGGAATGCTTTGTCTGGACCAAGGCGTTGCCAACTGTTCGATGCTTC
AGGTGCACATGAAGAATCTCAACCAGAAATACGAAAAGGAAACAAATGAG
AATGTTGGTTCCGTTCGAGTGCACCACAATCAGGTGGAAATTATTTGCCA
AGAGAGCAAGCAGCAGCTTGAGGCGGTGCAGGAGAAAACCGAAGTTAACT
TGGAACAGATGGTGGATGCAAGGCAGCAGCTTATCACCGAGGACAGACAG
CGATTCATAGGCCATGCCACTGTAGCCACTGATCTTGTCCAAGAGTCGAA
CCGGCAGTTCTCGGAGCATGCTGAACACCAACGGCAGCAGCTGCAAATTT
GCGAGCAAGAGCTTGTACGCTTCCAACAGTCGGAGTTGAAAACGTACGCC
CCAACTGGGACCACGCCCTCCAAAAGGGATTTCGTTTATCCGCGCACCCT
CGTGGCCACGTCGCCACATCAGGAAATTGTGAGGCGCTATCGCCAAGAGC
TGGACTGGTCAGATCTGGACACCACGGCCACTATAGATGAGTGCAGCGAG
GGTGAGCATGACGTCTCCATGCATTCCGTCCAGGAGCTGTCCGAAACTGA
AACCATAATGAACTCCACGCCCATTGAGCCCGTGGATGGTGTCACCGTGA
AGCGTGGGTGCGGCACCACCCGCAATTCCAATTCGAACGCCCTAAAGCCA
CCCGTAGCTACTGGTGGAAAACGCAGCAGCTCGTTGTCACGTTCCCTGAC
ACCCAGTAAAACGTCACCTCGAGGTTCTCCCGCCTTCGTCAGGCACAACA
AAGAAAACGTAGCCGCAAGCTTTCTAGACCAT

BO04493.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:51:28
Subject Length Description Subject Range Query Range Score Percent Strand
Klp61F-RA 3201 CG9191-PA 1..3198 17..3214 15990 100 Plus
CG32318-RA 495 CG32318-PA 1..319 17..335 1595 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:51:30
Subject Length Description Subject Range Query Range Score Percent Strand
Klp61F-RA 3871 CG9191-RA 271..3468 17..3214 15990 100 Plus
CG32318-RA 785 CG32318-RA 291..609 17..335 1595 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:51:26
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 1243668..1245000 1730..398 6665 100 Minus
3L 28110227 3L 1242392..1243603 2941..1730 6060 100 Minus
3L 28110227 3L 1245193..1245496 398..95 1520 100 Minus
3L 28110227 3L 1242076..1242329 3193..2940 1270 100 Minus
3L 28110227 3L 1246249..1246489 335..95 1205 100 Minus
3L 28110227 3L 1245561..1245640 96..17 400 100 Minus
3L 28110227 3L 1246554..1246633 96..17 400 100 Minus
Blast to na_te.dros performed on 2014-11-27 13:51:27 has no hits.

BO04493.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:36:42 Download gff for BO04493.complete
Subject Subject Range Query Range Percent Splice Strand
Klp61F-RA 295..3497 12..3214 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:26:46 Download gff for BO04493.complete
Subject Subject Range Query Range Percent Splice Strand
Klp61F-RA 271..3468 17..3216 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:02:27 Download gff for BO04493.complete
Subject Subject Range Query Range Percent Splice Strand
Klp61F-RA 300..3497 17..3216 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:57:26 Download gff for BO04493.complete
Subject Subject Range Query Range Percent Splice Strand
Klp61F-RA 271..3468 17..3216 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:57:26 Download gff for BO04493.complete
Subject Subject Range Query Range Percent Splice Strand
3L 1245194..1245494 97..397 100 <- Minus
3L 1245561..1245640 17..96 100   Minus
3L 1241968..1241991 3194..3216 91 <- Minus
3L 1242076..1242327 2942..3193 100 <- Minus
3L 1242392..1243602 1731..2941 100 <- Minus
3L 1243668..1245000 398..1730 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:26:46 Download gff for BO04493.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1241968..1241991 3194..3216 91 <- Minus
arm_3L 1242076..1242327 2942..3193 100 <- Minus
arm_3L 1242392..1243602 1731..2941 100 <- Minus
arm_3L 1243668..1245000 398..1730 100 <- Minus
arm_3L 1245194..1245494 97..397 100 <- Minus
arm_3L 1245561..1245640 17..96 100   Minus

BO04493.pep Sequence

Translation from 16 to 3232

> BO04493.pep
MDISGGNTSRQPQKKSNQNIQVYVRVRPLNSRERCIRSAEVVDVVGPREV
VTRHTLDSKLTKKFTFDRSFGPESKQCDVYSVVVSPLIEEVLNGYNCTVF
AYGQTGTGKTHTMVGNETAELKSSWEDDSDIGIIPRALSHLFDELRMMEV
EYTMRISYLELYNEELCDLLSTDDTTKIRIFDDSTKKGSVIIQGLEEIPV
HSKDDVYKLLEKGKERRKTATTLMNAQSSRSHTVFSIVVHIRENGIEGED
MLKIGKLNLVDLAGSENVSKAGNEKGIRVRETVNINQSLLTLGRVITALV
DRAPHVPYRESKLTRLLQESLGGRTKTSIIATISPGHKDIEETLSTLEYA
HRAKNIQNKPEVNQKLTKKTVLKEYTEEIDKLKRDLMAARDKNGIYLAEE
TYGEITLKLESQNRELNEKMLLLKALKDELQNKEKIFSEVSMSLVEKTQE
LKKTEENLLNTKGTLLLTKKVLTKTKRRYKEKKELVASHMKTEQVLTTQA
QEILAAADLATDDTHQLHGTIERRRELDEKIRRSCDQFKDRMQDNLEMIG
GSLNLYQDQQAALKEQLSQEMVNSSYVSQRLALNSSKSIEMLKEMCAQSL
QDQTNLHNKLIGEVMKISDQHSQAFVAKLMEQMQQQQLLMSKEIQTNLQV
IEENNQRHKAMLDSMQEKFATIIDSSLQSVEEHAKQMHKKLEQLGAMSLP
DAEELQNLQEELANERALAQQEDALLESMMMQMEQIKNLRSKNSISMSVH
LNKMEESRLTRNHRIDDIKSGIQDYQKLGIEASQSAQAELTSQMEAGMLC
LDQGVANCSMLQVHMKNLNQKYEKETNENVGSVRVHHNQVEIICQESKQQ
LEAVQEKTEVNLEQMVDARQQLITEDRQRFIGHATVATDLVQESNRQFSE
HAEHQRQQLQICEQELVRFQQSELKTYAPTGTTPSKRDFVYPRTLVATSP
HQEIVRRYRQELDWSDLDTTATIDECSEGEHDVSMHSVQELSETETIMNS
TPIEPVDGVTVKRGCGTTRNSNSNALKPPVATGGKRSSSLSRSLTPSKTS
PRGSPAFVRHNKENVAASFLDH

BO04493.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:19:29
Subject Length Description Subject Range Query Range Score Percent Strand
Klp61F-PA 1066 CG9191-PA 1..1066 1..1066 5358 100 Plus
Klp31E-PC 1048 CG5300-PC 11..746 17..756 704 29.9 Plus
Klp31E-PB 1048 CG5300-PB 11..746 17..756 704 29.9 Plus
Klp31E-PA 1048 CG5300-PA 11..746 17..756 704 29.9 Plus
Khc-PA 975 CG7765-PA 2..875 9..876 702 28 Plus