Clone Sequence Records
BO04506.3prime Sequence
859 bp (848 high quality bases) assembled on 2005-12-01
> BO04506.3prime
ATGGTCTAGAAAGCTTGCGTTTGATGAGCCAATGCCGGTTAGCTCCTGCA
GCTCCTTGAGCAAGTGCTTATTGTACTCCTTGTGATTGATAGGGGCTACA
GACTGCACAGTGAGCTTGTTGCGAGTCATGTCCCCGTAAACCTCGTTCTT
GCAGCGCAGCTTAAAGATGTGTGAAGTGAAGTTGAGTGCTGAGAAAATCT
GCTCGGCTTTGGCAGGGTCGTTCTCAAGGGCCTCACCCACTTCCTGCGAA
GTGTGCCCGAGAAGCTGTTCACCGACCTCGTTAAAACTGCTGACCCAACG
GTTGGAAGTCCAGTCCCCGATGCTCATGTTGATCAGCAGTCGGTACTTAA
AGTTGGGAAACAGTGCGTTACATTTCTCGCAGCGGAACTGGTCGTTGCCC
TCATCGACAACCTTCTTGTTGCAGTCGCTCTGAGGGCAGGCTCGGTAGAA
AGCATTTTCCTGTTTGACAATGTGCACCACTGCCTTGCACTGGAAGTAAT
CAGGCTTGTCGCCGCTGCCGAGATTGCGAGCCCGCGCATCCTTAAGCGTC
ATCCATTCAGTAGAGAAGCTTCCTCCGCCCGTTCGCGCCGAAACCATATT
GGCGACACTGTCACCACCTCCATTGTCGAACCAGCCGCGCAGCTTATGTG
CCTCGGGTATATCGGGGTTAATCTTCATGATTGAGCCACCGCCGAGGCTC
AAGGACTTTCCGCCATTGAACTCGTTAATGCGTGTTCCCTTGACCAGGAT
CACAGGCTGCACATGACCGTCAAAGTTAACGGCATCATCCCCCCAAAGGG
TCAAGCTGATGGCCGAGTTACTCATGTCCACTAGGGTTATGTCCCGTTTC
TTGAATTCC
BO04506.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:06:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9633-PA | 1812 | RpA-70-RA | 969..1809 | 859..19 | 4205 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 05:35:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpA-70-RA | 2135 | CG9633-RA | 1050..1890 | 859..19 | 4205 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 05:35:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 8262753..8263284 | 328..859 | 2660 | 100 | Plus |
3R | 32079331 | 3R | 8262365..8262673 | 19..327 | 1545 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 05:35:29 has no hits.
BO04506.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:04:31 Download gff for
BO04506.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9633-PA | 969..1812 | 16..859 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:18:16 Download gff for
BO04506.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9633-PA | 969..1812 | 16..859 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 17:54:12 Download gff for
BO04506.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpA-70-RA | 1050..1896 | 11..859 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:49:19 Download gff for
BO04506.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpA-70-RA | 1050..1896 | 11..859 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 07:49:19 Download gff for
BO04506.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 8262359..8262673 | 11..327 | 98 | <- | Plus |
3R | 8262753..8263284 | 328..859 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 17:54:12 Download gff for
BO04506.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 4088081..4088395 | 11..327 | 98 | <- | Plus |
arm_3R | 4088475..4089006 | 328..859 | 100 | | Plus |
BO04506.5prime Sequence
860 bp (748 high quality bases) assembled on 2005-12-01
> BO04506.5prime
GAAGTTATCAGTCGACATGGTCCTGGCATCTTTGTCCACTGGTGTGATTG
CTCGCATTATGCATGGCGAGGTTGTGGATGCCCCGGTTCTCCAGATCCTG
GCAATCAAGAAGATTAACAGCGCAGCGGACTCAGAGCGCTATCGCATCCT
AATCTCCGACGGCAAGTACTTTAACAGCTATGCGATGCTGGCCAGTCAGC
TGAACGTGATGCAGCACAATGGAGAATTAGAGGAGTTCACCATTGTCCAG
CTAGATAAATATGTGACCTCACTGGTAGGCAAGGACGGAGCCGGAAAACG
CGTTCTCATCATTTCCGAACTAACTGTGGTGAATCCTGGCGCCGAGGTTA
AGTCCAAAATTGGCGAACCCGTTACGTATGAAAATGCAGCCAAGCAGGAT
CTGGCGCCTAAGCCAGCAGTAACATCTAATTCCAAGCCAATTGCCAAAAA
GGAACCGAGCCACAACAACAATAATAACATAGTAATGAATTCCTCTATTA
ATAGTGGAATGACACATCCCATTTCTAGCCTAAGTCCCTACCAAAATAAG
TGGGTGATTAAGGCTCGCGTGACCTCAAAATCCGGCATTCGCACCTGGAG
CAATGCCCGCGGCGAGGGCAAGTTGTTCAGCATGGATTTAATGGACGAAT
CGGGCGAAATTCGGGCCACTGCCTTCAAGGAACAGTGCGATAAGTTCTAC
GACCTCATTCAAGTGGATAGCGTGTACTATATATCAAAGTGTCAATTGAA
ACCGGCAAACAAGCAGTACTCTTCGCTGAACAACGCCTACGAGATGACTT
TTTCCGGTGAAACAGTTGTCCAGCTTTGTGAGGATACCGACGATGATCCC
ATACCGGGAA
BO04506.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:06:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9633-PA | 1812 | RpA-70-RA | 1..841 | 17..857 | 4205 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 05:35:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpA-70-RA | 2135 | CG9633-RA | 82..922 | 17..857 | 4205 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 05:35:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 8263412..8263971 | 857..298 | 2800 | 100 | Minus |
3R | 32079331 | 3R | 8264029..8264273 | 297..53 | 1225 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 05:35:37 has no hits.
BO04506.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:04:32 Download gff for
BO04506.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9633-PA | 1..841 | 17..858 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:18:17 Download gff for
BO04506.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9633-PA | 1..841 | 17..858 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 17:54:14 Download gff for
BO04506.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpA-70-RA | 71..924 | 5..860 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:49:31 Download gff for
BO04506.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpA-70-RA | 71..924 | 5..860 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 07:49:31 Download gff for
BO04506.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 8264029..8264273 | 53..297 | 100 | <- | Minus |
3R | 8264335..8264381 | 5..52 | 91 | | Minus |
3R | 8263409..8263971 | 298..860 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 17:54:14 Download gff for
BO04506.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 4089751..4089995 | 53..297 | 100 | <- | Minus |
arm_3R | 4090057..4090103 | 5..52 | 91 | | Minus |
arm_3R | 4089131..4089693 | 298..860 | 99 | <- | Minus |
BO04506.complete Sequence
1843 bp (1843 high quality bases) assembled on 2006-08-17
GenBank Submission: FJ629785
> BO04506.complete
GAAGTTATCAGTCGACATGGTCCTGGCATCTTTGTCCACTGGTGTGATTG
CTCGCATTATGCATGGCGAGGTTGTGGATGCCCCGGTTCTCCAGATCCTG
GCAATCAAGAAGATTAACAGCGCAGCGGACTCAGAGCGCTATCGCATCCT
AATCTCCGACGGCAAGTACTTTAACAGCTATGCGATGCTGGCCAGTCAGC
TGAACGTGATGCAGCACAATGGAGAATTAGAGGAGTTCACCATTGTCCAG
CTAGATAAATATGTGACCTCACTGGTAGGCAAGGACGGAGCCGGAAAACG
CGTTCTCATCATTTCCGAACTAACTGTGGTGAATCCTGGCGCCGAGGTTA
AGTCCAAAATTGGCGAACCCGTTACGTATGAAAATGCAGCCAAGCAGGAT
CTGGCGCCTAAGCCAGCAGTAACATCTAATTCCAAGCCAATTGCCAAAAA
GGAACCGAGCCACAACAACAATAATAACATAGTAATGAATTCCTCTATTA
ATAGTGGAATGACACATCCCATTTCTAGCCTAAGTCCCTACCAAAATAAG
TGGGTGATTAAGGCTCGCGTGACCTCAAAATCCGGCATTCGCACCTGGAG
CAATGCCCGCGGCGAGGGCAAGTTGTTCAGCATGGATTTAATGGACGAAT
CGGGCGAAATTCGGGCCACTGCCTTCAAGGAACAGTGCGATAAGTTCTAC
GACCTCATTCAAGTGGATAGCGTGTACTATATATCAAAGTGTCAATTGAA
ACCGGCAAACAAGCAGTACTCTTCGCTGAACAACGCCTACGAGATGACTT
TTTCCGGTGAAACAGTTGTCCAGCTTTGTGAGGATACCGACGATGATCCC
ATACCGGAAATTAAGTACAACCTTGTTCCTATTTCCGATGTGTCGGGTAT
GGAAAATAAAGCAGCGGTAGACACAATAGGAATTTGCAAGGAGGTGGGCG
AGTTGCAATCATTCGTAGCTCGCACCACAAACAAGGAATTCAAGAAACGG
GACATAACCCTAGTGGACATGAGTAACTCGGCCATCAGCTTGACCCTTTG
GGGGGATGATGCCGTTAACTTTGACGGTCATGTGCAGCCTGTGATCCTGG
TCAAGGGAACACGCATTAACGAGTTCAATGGCGGAAAGTCCTTGAGCCTC
GGCGGTGGCTCAATCATGAAGATTAACCCCGATATACCCGAGGCACATAA
GCTGCGCGGCTGGTTCGACAATGGAGGTGGTGACAGTGTCGCCAATATGG
TTTCGGCGCGAACGGGCGGAGGAAGCTTCTCTACTGAATGGATGACGCTT
AAGGATGCGCGGGCTCGCAATCTCGGCAGCGGCGACAAGCCTGATTACTT
CCAGTGCAAGGCAGTGGTGCACATTGTCAAACAGGAAAATGCTTTCTACC
GAGCCTGCCCTCAGAGCGACTGCAACAAGAAGGTTGTCGATGAGGGCAAC
GACCAGTTCCGCTGCGAGAAATGTAACGCACTGTTTCCCAACTTTAAGTA
CCGACTGCTGATCAACATGAGCATCGGGGACTGGACTTCCAACCGTTGGG
TCAGCAGTTTTAACGAGGTCGGTGAACAGCTTCTCGGGCACACTTCGCAG
GAAGTGGGTGAGGCCCTTGAGAACGACCCTGCCAAAGCCGAGCAGATTTT
CTCAGCACTCAACTTCACTTCACACATCTTTAAGCTGCGCTGCAAGAACG
AGGTTTACGGGGACATGACTCGCAACAAGCTCACTGTGCAGTCTGTAGCC
CCTATCAATCACAAGGAGTACAATAAGCACTTGCTCAAGGAGCTGCAGGA
GCTAACCGGCATTGGCTCATCAAACGCAAGCTTTCTAGACCAT
BO04506.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:31:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpA-70-RA | 1812 | CG9633-PA | 1..1809 | 17..1825 | 9045 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:32:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpA-70-RA | 2135 | CG9633-RA | 82..1890 | 17..1825 | 9045 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:31:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 8262753..8263971 | 1516..298 | 6095 | 100 | Minus |
3R | 32079331 | 3R | 8262365..8262673 | 1825..1517 | 1545 | 100 | Minus |
3R | 32079331 | 3R | 8264029..8264273 | 297..53 | 1225 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 07:31:56 has no hits.
BO04506.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:04:14 Download gff for
BO04506.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpA-70-RA | 1..1812 | 17..1828 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:23:18 Download gff for
BO04506.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpA-70-RA | 69..1894 | 5..1833 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:22:44 Download gff for
BO04506.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpA-70-RA | 82..1890 | 17..1827 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:04:14 Download gff for
BO04506.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpA-70-RA | 69..1894 | 5..1833 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:00:14 Download gff for
BO04506.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpA-70-RA | 82..1890 | 17..1827 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:00:14 Download gff for
BO04506.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 8262362..8262673 | 1517..1827 | 99 | <- | Minus |
3R | 8262753..8263971 | 298..1516 | 100 | <- | Minus |
3R | 8264029..8264273 | 53..297 | 100 | <- | Minus |
3R | 8264335..8264370 | 17..52 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:22:44 Download gff for
BO04506.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 4088084..4088395 | 1517..1827 | 99 | <- | Minus |
arm_3R | 4088475..4089693 | 298..1516 | 100 | <- | Minus |
arm_3R | 4089751..4089995 | 53..297 | 100 | <- | Minus |
arm_3R | 4090057..4090092 | 17..52 | 100 | | Minus |
BO04506.pep Sequence
Translation from 16 to 1843
> BO04506.pep
MVLASLSTGVIARIMHGEVVDAPVLQILAIKKINSAADSERYRILISDGK
YFNSYAMLASQLNVMQHNGELEEFTIVQLDKYVTSLVGKDGAGKRVLIIS
ELTVVNPGAEVKSKIGEPVTYENAAKQDLAPKPAVTSNSKPIAKKEPSHN
NNNNIVMNSSINSGMTHPISSLSPYQNKWVIKARVTSKSGIRTWSNARGE
GKLFSMDLMDESGEIRATAFKEQCDKFYDLIQVDSVYYISKCQLKPANKQ
YSSLNNAYEMTFSGETVVQLCEDTDDDPIPEIKYNLVPISDVSGMENKAA
VDTIGICKEVGELQSFVARTTNKEFKKRDITLVDMSNSAISLTLWGDDAV
NFDGHVQPVILVKGTRINEFNGGKSLSLGGGSIMKINPDIPEAHKLRGWF
DNGGGDSVANMVSARTGGGSFSTEWMTLKDARARNLGSGDKPDYFQCKAV
VHIVKQENAFYRACPQSDCNKKVVDEGNDQFRCEKCNALFPNFKYRLLIN
MSIGDWTSNRWVSSFNEVGEQLLGHTSQEVGEALENDPAKAEQIFSALNF
TSHIFKLRCKNEVYGDMTRNKLTVQSVAPINHKEYNKHLLKELQELTGIG
SSNASFLDH
BO04506.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:04:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpA-70-PA | 603 | CG9633-PA | 1..603 | 1..603 | 3127 | 100 | Plus |