Clone BO04506 Report

Search the DGRC for BO04506

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:45
Well:6
Vector:pDNR-Dual
Associated Gene/TranscriptRpA-70-RA
Protein status:BO04506.pep: validated full length
Sequenced Size:1843

Clone Sequence Records

BO04506.3prime Sequence

859 bp (848 high quality bases) assembled on 2005-12-01

> BO04506.3prime
ATGGTCTAGAAAGCTTGCGTTTGATGAGCCAATGCCGGTTAGCTCCTGCA
GCTCCTTGAGCAAGTGCTTATTGTACTCCTTGTGATTGATAGGGGCTACA
GACTGCACAGTGAGCTTGTTGCGAGTCATGTCCCCGTAAACCTCGTTCTT
GCAGCGCAGCTTAAAGATGTGTGAAGTGAAGTTGAGTGCTGAGAAAATCT
GCTCGGCTTTGGCAGGGTCGTTCTCAAGGGCCTCACCCACTTCCTGCGAA
GTGTGCCCGAGAAGCTGTTCACCGACCTCGTTAAAACTGCTGACCCAACG
GTTGGAAGTCCAGTCCCCGATGCTCATGTTGATCAGCAGTCGGTACTTAA
AGTTGGGAAACAGTGCGTTACATTTCTCGCAGCGGAACTGGTCGTTGCCC
TCATCGACAACCTTCTTGTTGCAGTCGCTCTGAGGGCAGGCTCGGTAGAA
AGCATTTTCCTGTTTGACAATGTGCACCACTGCCTTGCACTGGAAGTAAT
CAGGCTTGTCGCCGCTGCCGAGATTGCGAGCCCGCGCATCCTTAAGCGTC
ATCCATTCAGTAGAGAAGCTTCCTCCGCCCGTTCGCGCCGAAACCATATT
GGCGACACTGTCACCACCTCCATTGTCGAACCAGCCGCGCAGCTTATGTG
CCTCGGGTATATCGGGGTTAATCTTCATGATTGAGCCACCGCCGAGGCTC
AAGGACTTTCCGCCATTGAACTCGTTAATGCGTGTTCCCTTGACCAGGAT
CACAGGCTGCACATGACCGTCAAAGTTAACGGCATCATCCCCCCAAAGGG
TCAAGCTGATGGCCGAGTTACTCATGTCCACTAGGGTTATGTCCCGTTTC
TTGAATTCC

BO04506.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:06:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG9633-PA 1812 RpA-70-RA 969..1809 859..19 4205 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 05:35:30
Subject Length Description Subject Range Query Range Score Percent Strand
RpA-70-RA 2135 CG9633-RA 1050..1890 859..19 4205 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 05:35:28
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 8262753..8263284 328..859 2660 100 Plus
3R 32079331 3R 8262365..8262673 19..327 1545 100 Plus
Blast to na_te.dros performed on 2015-02-13 05:35:29 has no hits.

BO04506.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:04:31 Download gff for BO04506.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9633-PA 969..1812 16..859 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:18:16 Download gff for BO04506.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9633-PA 969..1812 16..859 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 17:54:12 Download gff for BO04506.3prime
Subject Subject Range Query Range Percent Splice Strand
RpA-70-RA 1050..1896 11..859 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:49:19 Download gff for BO04506.3prime
Subject Subject Range Query Range Percent Splice Strand
RpA-70-RA 1050..1896 11..859 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 07:49:19 Download gff for BO04506.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 8262359..8262673 11..327 98 <- Plus
3R 8262753..8263284 328..859 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 17:54:12 Download gff for BO04506.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 4088081..4088395 11..327 98 <- Plus
arm_3R 4088475..4089006 328..859 100   Plus

BO04506.5prime Sequence

860 bp (748 high quality bases) assembled on 2005-12-01

> BO04506.5prime
GAAGTTATCAGTCGACATGGTCCTGGCATCTTTGTCCACTGGTGTGATTG
CTCGCATTATGCATGGCGAGGTTGTGGATGCCCCGGTTCTCCAGATCCTG
GCAATCAAGAAGATTAACAGCGCAGCGGACTCAGAGCGCTATCGCATCCT
AATCTCCGACGGCAAGTACTTTAACAGCTATGCGATGCTGGCCAGTCAGC
TGAACGTGATGCAGCACAATGGAGAATTAGAGGAGTTCACCATTGTCCAG
CTAGATAAATATGTGACCTCACTGGTAGGCAAGGACGGAGCCGGAAAACG
CGTTCTCATCATTTCCGAACTAACTGTGGTGAATCCTGGCGCCGAGGTTA
AGTCCAAAATTGGCGAACCCGTTACGTATGAAAATGCAGCCAAGCAGGAT
CTGGCGCCTAAGCCAGCAGTAACATCTAATTCCAAGCCAATTGCCAAAAA
GGAACCGAGCCACAACAACAATAATAACATAGTAATGAATTCCTCTATTA
ATAGTGGAATGACACATCCCATTTCTAGCCTAAGTCCCTACCAAAATAAG
TGGGTGATTAAGGCTCGCGTGACCTCAAAATCCGGCATTCGCACCTGGAG
CAATGCCCGCGGCGAGGGCAAGTTGTTCAGCATGGATTTAATGGACGAAT
CGGGCGAAATTCGGGCCACTGCCTTCAAGGAACAGTGCGATAAGTTCTAC
GACCTCATTCAAGTGGATAGCGTGTACTATATATCAAAGTGTCAATTGAA
ACCGGCAAACAAGCAGTACTCTTCGCTGAACAACGCCTACGAGATGACTT
TTTCCGGTGAAACAGTTGTCCAGCTTTGTGAGGATACCGACGATGATCCC
ATACCGGGAA

BO04506.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:06:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG9633-PA 1812 RpA-70-RA 1..841 17..857 4205 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 05:35:38
Subject Length Description Subject Range Query Range Score Percent Strand
RpA-70-RA 2135 CG9633-RA 82..922 17..857 4205 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 05:35:36
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 8263412..8263971 857..298 2800 100 Minus
3R 32079331 3R 8264029..8264273 297..53 1225 100 Minus
Blast to na_te.dros performed on 2015-02-13 05:35:37 has no hits.

BO04506.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:04:32 Download gff for BO04506.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9633-PA 1..841 17..858 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:18:17 Download gff for BO04506.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9633-PA 1..841 17..858 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 17:54:14 Download gff for BO04506.5prime
Subject Subject Range Query Range Percent Splice Strand
RpA-70-RA 71..924 5..860 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:49:31 Download gff for BO04506.5prime
Subject Subject Range Query Range Percent Splice Strand
RpA-70-RA 71..924 5..860 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 07:49:31 Download gff for BO04506.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 8264029..8264273 53..297 100 <- Minus
3R 8264335..8264381 5..52 91   Minus
3R 8263409..8263971 298..860 99 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 17:54:14 Download gff for BO04506.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 4089751..4089995 53..297 100 <- Minus
arm_3R 4090057..4090103 5..52 91   Minus
arm_3R 4089131..4089693 298..860 99 <- Minus

BO04506.complete Sequence

1843 bp (1843 high quality bases) assembled on 2006-08-17

GenBank Submission: FJ629785

> BO04506.complete
GAAGTTATCAGTCGACATGGTCCTGGCATCTTTGTCCACTGGTGTGATTG
CTCGCATTATGCATGGCGAGGTTGTGGATGCCCCGGTTCTCCAGATCCTG
GCAATCAAGAAGATTAACAGCGCAGCGGACTCAGAGCGCTATCGCATCCT
AATCTCCGACGGCAAGTACTTTAACAGCTATGCGATGCTGGCCAGTCAGC
TGAACGTGATGCAGCACAATGGAGAATTAGAGGAGTTCACCATTGTCCAG
CTAGATAAATATGTGACCTCACTGGTAGGCAAGGACGGAGCCGGAAAACG
CGTTCTCATCATTTCCGAACTAACTGTGGTGAATCCTGGCGCCGAGGTTA
AGTCCAAAATTGGCGAACCCGTTACGTATGAAAATGCAGCCAAGCAGGAT
CTGGCGCCTAAGCCAGCAGTAACATCTAATTCCAAGCCAATTGCCAAAAA
GGAACCGAGCCACAACAACAATAATAACATAGTAATGAATTCCTCTATTA
ATAGTGGAATGACACATCCCATTTCTAGCCTAAGTCCCTACCAAAATAAG
TGGGTGATTAAGGCTCGCGTGACCTCAAAATCCGGCATTCGCACCTGGAG
CAATGCCCGCGGCGAGGGCAAGTTGTTCAGCATGGATTTAATGGACGAAT
CGGGCGAAATTCGGGCCACTGCCTTCAAGGAACAGTGCGATAAGTTCTAC
GACCTCATTCAAGTGGATAGCGTGTACTATATATCAAAGTGTCAATTGAA
ACCGGCAAACAAGCAGTACTCTTCGCTGAACAACGCCTACGAGATGACTT
TTTCCGGTGAAACAGTTGTCCAGCTTTGTGAGGATACCGACGATGATCCC
ATACCGGAAATTAAGTACAACCTTGTTCCTATTTCCGATGTGTCGGGTAT
GGAAAATAAAGCAGCGGTAGACACAATAGGAATTTGCAAGGAGGTGGGCG
AGTTGCAATCATTCGTAGCTCGCACCACAAACAAGGAATTCAAGAAACGG
GACATAACCCTAGTGGACATGAGTAACTCGGCCATCAGCTTGACCCTTTG
GGGGGATGATGCCGTTAACTTTGACGGTCATGTGCAGCCTGTGATCCTGG
TCAAGGGAACACGCATTAACGAGTTCAATGGCGGAAAGTCCTTGAGCCTC
GGCGGTGGCTCAATCATGAAGATTAACCCCGATATACCCGAGGCACATAA
GCTGCGCGGCTGGTTCGACAATGGAGGTGGTGACAGTGTCGCCAATATGG
TTTCGGCGCGAACGGGCGGAGGAAGCTTCTCTACTGAATGGATGACGCTT
AAGGATGCGCGGGCTCGCAATCTCGGCAGCGGCGACAAGCCTGATTACTT
CCAGTGCAAGGCAGTGGTGCACATTGTCAAACAGGAAAATGCTTTCTACC
GAGCCTGCCCTCAGAGCGACTGCAACAAGAAGGTTGTCGATGAGGGCAAC
GACCAGTTCCGCTGCGAGAAATGTAACGCACTGTTTCCCAACTTTAAGTA
CCGACTGCTGATCAACATGAGCATCGGGGACTGGACTTCCAACCGTTGGG
TCAGCAGTTTTAACGAGGTCGGTGAACAGCTTCTCGGGCACACTTCGCAG
GAAGTGGGTGAGGCCCTTGAGAACGACCCTGCCAAAGCCGAGCAGATTTT
CTCAGCACTCAACTTCACTTCACACATCTTTAAGCTGCGCTGCAAGAACG
AGGTTTACGGGGACATGACTCGCAACAAGCTCACTGTGCAGTCTGTAGCC
CCTATCAATCACAAGGAGTACAATAAGCACTTGCTCAAGGAGCTGCAGGA
GCTAACCGGCATTGGCTCATCAAACGCAAGCTTTCTAGACCAT

BO04506.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:31:57
Subject Length Description Subject Range Query Range Score Percent Strand
RpA-70-RA 1812 CG9633-PA 1..1809 17..1825 9045 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:32:00
Subject Length Description Subject Range Query Range Score Percent Strand
RpA-70-RA 2135 CG9633-RA 82..1890 17..1825 9045 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:31:55
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 8262753..8263971 1516..298 6095 100 Minus
3R 32079331 3R 8262365..8262673 1825..1517 1545 100 Minus
3R 32079331 3R 8264029..8264273 297..53 1225 100 Minus
Blast to na_te.dros performed on 2014-11-27 07:31:56 has no hits.

BO04506.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:04:14 Download gff for BO04506.complete
Subject Subject Range Query Range Percent Splice Strand
RpA-70-RA 1..1812 17..1828 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:23:18 Download gff for BO04506.complete
Subject Subject Range Query Range Percent Splice Strand
RpA-70-RA 69..1894 5..1833 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:22:44 Download gff for BO04506.complete
Subject Subject Range Query Range Percent Splice Strand
RpA-70-RA 82..1890 17..1827 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:04:14 Download gff for BO04506.complete
Subject Subject Range Query Range Percent Splice Strand
RpA-70-RA 69..1894 5..1833 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:00:14 Download gff for BO04506.complete
Subject Subject Range Query Range Percent Splice Strand
RpA-70-RA 82..1890 17..1827 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:00:14 Download gff for BO04506.complete
Subject Subject Range Query Range Percent Splice Strand
3R 8262362..8262673 1517..1827 99 <- Minus
3R 8262753..8263971 298..1516 100 <- Minus
3R 8264029..8264273 53..297 100 <- Minus
3R 8264335..8264370 17..52 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:22:44 Download gff for BO04506.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 4088084..4088395 1517..1827 99 <- Minus
arm_3R 4088475..4089693 298..1516 100 <- Minus
arm_3R 4089751..4089995 53..297 100 <- Minus
arm_3R 4090057..4090092 17..52 100   Minus

BO04506.pep Sequence

Translation from 16 to 1843

> BO04506.pep
MVLASLSTGVIARIMHGEVVDAPVLQILAIKKINSAADSERYRILISDGK
YFNSYAMLASQLNVMQHNGELEEFTIVQLDKYVTSLVGKDGAGKRVLIIS
ELTVVNPGAEVKSKIGEPVTYENAAKQDLAPKPAVTSNSKPIAKKEPSHN
NNNNIVMNSSINSGMTHPISSLSPYQNKWVIKARVTSKSGIRTWSNARGE
GKLFSMDLMDESGEIRATAFKEQCDKFYDLIQVDSVYYISKCQLKPANKQ
YSSLNNAYEMTFSGETVVQLCEDTDDDPIPEIKYNLVPISDVSGMENKAA
VDTIGICKEVGELQSFVARTTNKEFKKRDITLVDMSNSAISLTLWGDDAV
NFDGHVQPVILVKGTRINEFNGGKSLSLGGGSIMKINPDIPEAHKLRGWF
DNGGGDSVANMVSARTGGGSFSTEWMTLKDARARNLGSGDKPDYFQCKAV
VHIVKQENAFYRACPQSDCNKKVVDEGNDQFRCEKCNALFPNFKYRLLIN
MSIGDWTSNRWVSSFNEVGEQLLGHTSQEVGEALENDPAKAEQIFSALNF
TSHIFKLRCKNEVYGDMTRNKLTVQSVAPINHKEYNKHLLKELQELTGIG
SSNASFLDH

BO04506.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:04:43
Subject Length Description Subject Range Query Range Score Percent Strand
RpA-70-PA 603 CG9633-PA 1..603 1..603 3127 100 Plus