Clone BO04508 Report

Search the DGRC for BO04508

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:45
Well:8
Vector:pDNR-Dual
Associated Gene/TranscriptCG17082-RB
Protein status:BO04508.pep: Imported from assembly
Sequenced Size:1921

Clone Sequence Records

BO04508.3prime Sequence

900 bp (755 high quality bases) assembled on 2005-12-01

> BO04508.3prime
ATGGTCTAGAAAGCTTGCAATAACAAATGGATGTAAATGCTTTAAATTGG
TTGAGTATTTATTTATAACTGTAGAGTCGTGTCCAACGCCGACATTGCTC
GCCTTTCCGCTTGGTTTTGCCGTAATTTCATTTGAATTCCGATGCCGATG
CCATCCTTTCTTACCCATCATTGTTTTCTGTGACTCCACAATTAAATTGT
TTGGTACTTGGAAAAGTTTTTCGCCACGTAGGATTAAAATATTCGTCAAA
CGGCAACACTGAGCGGCCATTCTTACTTGTTCTGCAATGCTGTTATTGTC
ACTCGGATGTATATAACGTGGTGGAAACATTGACGGTGCCATTATTGTTG
CTACGTTATGCACATTCATTTTGTTTATATCTTTTAAATTAATTATAATA
TTAAAAAAGCTTAATAATGAACGTAATGTGTTTCTATTTTCAGGCGGAAG
CAGGTGACATAAAATCGATAGTGCATTCATTTGATCTATTGATGGAAGTG
TGTGACATTGATAAAACAGTTGTATAAGCTCATTAGTAAGCAAAGGTTGA
GGAAGTTCGCGCAGCCATCGTTTTAGCAACGAACTAAGTTCATGAACAGT
AGCTGTGCGAAAGAGGTTATCTAGATTATCTGGATTTTGATAAAATGTTG
ATTCTAATTCATTATAAAGTAATTCAGTCTTTTGTTTATGACCACCTATT
CGAAGTAATCCTTCTTCTCTAGAGCCACGTCGCAGAAGTTCGCCAATTAG
CTTTTCCAAAATAGTGGGACCAAAGATGAGTCAGTGCCAGTAACTTGCTG
ATCCCGACGAATAAGAGCGTTTATAGATACCCCCAAAAAGATTACCCTCT
TCTTTGCAACGACGCTTAAAAGGTTTTCTTTTATCTAAAGAAACTTTGTT

BO04508.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:06:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG17082-PE 1890 CG17082-RE 1145..1887 761..19 3715 100 Minus
CG17082-PB 1890 CG17082-RB 1145..1887 761..19 3715 100 Minus
CG17082-PD 1890 CG17082-RD 1145..1887 761..19 3715 100 Minus
CG17082-PA 1890 CG17082-RA 1145..1887 761..19 3715 100 Minus
CG17082-PC 1998 CG17082-RC 1253..1995 761..19 3715 100 Minus
CG17082-PF 1890 CG17082-RF 1145..1887 761..19 3715 100 Minus
CG17082-PE 1890 CG17082-RE 1072..1147 833..758 380 100 Minus
CG17082-PB 1890 CG17082-RB 1072..1147 833..758 380 100 Minus
CG17082-PD 1890 CG17082-RD 1072..1147 833..758 380 100 Minus
CG17082-PA 1890 CG17082-RA 1072..1147 833..758 380 100 Minus
CG17082-PC 1998 CG17082-RC 1180..1255 833..758 380 100 Minus
CG17082-PF 1890 CG17082-RF 1072..1147 833..758 380 100 Minus
CG17082-PE 1890 CG17082-RE 1006..1075 900..831 325 98.5 Minus
CG17082-PB 1890 CG17082-RB 1006..1075 900..831 325 98.5 Minus
CG17082-PD 1890 CG17082-RD 1006..1075 900..831 325 98.5 Minus
CG17082-PA 1890 CG17082-RA 1006..1075 900..831 325 98.5 Minus
CG17082-PC 1998 CG17082-RC 1114..1183 900..831 325 98.5 Minus
CG17082-PF 1890 CG17082-RF 1006..1075 900..831 325 98.5 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:17:38
Subject Length Description Subject Range Query Range Score Percent Strand
conu-RI 2070 CG17082-RI 1089..1970 900..19 4350 99.7 Minus
conu-RG 2098 CG17082-RG 1117..1998 900..19 4350 99.7 Minus
conu-RA 2210 CG17082-RA 1229..2110 900..19 4350 99.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 15:17:34
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 4757234..4757749 680..165 2580 100 Minus
2R 25286936 2R 4756944..4757165 900..679 1000 98.7 Minus
2R 25286936 2R 4757801..4757948 166..19 740 100 Minus
Blast to na_te.dros performed 2015-02-13 15:17:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dbif\P-element_M 2935 Dbif\P-element_M P_M 2935bp Derived from X60990. 2504..2593 436..351 116 62.2 Minus

BO04508.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:37:46 Download gff for BO04508.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17082-PE 1006..1890 15..900 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:02:03 Download gff for BO04508.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17082-RA 1223..2107 15..900 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:48:13 Download gff for BO04508.3prime
Subject Subject Range Query Range Percent Splice Strand
conu-RA 1229..2113 15..900 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 16:48:13 Download gff for BO04508.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 4756944..4757165 679..900 98 -> Minus
2R 4757236..4757748 166..678 100 -> Minus
2R 4757802..4757951 15..165 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:02:03 Download gff for BO04508.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 644449..644670 679..900 98 -> Minus
arm_2R 644741..645253 166..678 100 -> Minus
arm_2R 645307..645456 15..165 98   Minus

BO04508.5prime Sequence

881 bp (806 high quality bases) assembled on 2005-12-01

> BO04508.5prime
GAAGTTATCAGTCGACATGAACAGCAATACAGATCTCCATCATTCAGATG
ATCAGGACTTTTCGGAATTTCTCAATGAGTATTATCTGCAAAGCAATTCC
CAAAGTATCGAACCTGAAGCAAGTTACGAAGATGGAGAAATGGAAGCAGA
GTGGCTAGTTTCTGCTGGTTATCCAGAATTGACAAAACCGTTTGAACAAG
GGTTAGAGGTTTCTAAAAAGGACTTGGAACCCATACTGACTACTTTATCG
AAGCCCCATGCTGAAGCGATTGTACAACTAGTAAGGACTTTAAACAAAAC
AGTACGGGTGCGCACAAAAAGTCGGCCAAAACGGAAACCTGATATAAGGG
ATGTATTTCGCGAATTTGATGAACAAGGGACAGTTACACGCTCACGAAGT
GCCACTCCGGATTCCCTGGACTCTTTACAAATCGATGAAGCTTGGACCAA
CAATTCTTTACCGACTTTTGTAAATGTATATGAAAAAAATACCGAAACTG
CCATACAATGTGTAGAACAATCAAACGAAATATATTTAAAACAAAACCTG
CGACGAACCCCTAGCGCCCCGCCTAAAAGCGGCACCTATGCGGATATATT
TCGTGGTTCGCAAGTGCGATGTGATATACCTTTGTACTCGGCGGATGGTG
TAGAATTGCTTGGATATTCACGGATTGGCACCATACAATTTCCTCGGAAC
CGATCCGTCTCTGATCCATTTTGTTCTATTGGTCGATCAAAGGAGTCAAG
AAGTGAAAATGATGCACGATCACAAAAGAAAAAATCGAGTGAAGTGCTGT
CAGCCTCAGAGAATGAATGCGGTCGCCTTTTACCGATGCCCTACAATGTC
CTGAGCTTTGAAAGTATTTGTCGAGATTCTT

BO04508.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:06:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG17082-PE 1890 CG17082-RE 1..865 17..881 4325 100 Plus
CG17082-PB 1890 CG17082-RB 1..865 17..881 4325 100 Plus
CG17082-PD 1890 CG17082-RD 1..865 17..881 4325 100 Plus
CG17082-PA 1890 CG17082-RA 1..865 17..881 4325 100 Plus
CG17082-PC 1998 CG17082-RC 109..973 17..881 4325 100 Plus
CG17082-PF 1890 CG17082-RF 1..865 17..881 4325 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:38:44
Subject Length Description Subject Range Query Range Score Percent Strand
conu-RI 2070 CG17082-RI 84..948 17..881 4325 100 Plus
conu-RG 2098 CG17082-RG 112..976 17..881 4325 100 Plus
conu-RA 2210 CG17082-RA 224..1088 17..881 4325 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 15:38:40
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 4756316..4756588 460..732 1365 100 Plus
2R 25286936 2R 4754500..4754671 200..371 860 100 Plus
2R 25286936 2R 4756654..4756803 732..881 750 100 Plus
2R 25286936 2R 4749272..4749386 17..131 575 100 Plus
2R 25286936 2R 4756171..4756259 371..459 445 100 Plus
2R 25286936 2R 4749444..4749514 130..200 355 100 Plus
Blast to na_te.dros performed on 2015-02-13 15:38:42 has no hits.

BO04508.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:37:46 Download gff for BO04508.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17082-PF 1..865 17..881 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:57:48 Download gff for BO04508.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17082-RD 105..969 17..881 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 17:22:19 Download gff for BO04508.5prime
Subject Subject Range Query Range Percent Splice Strand
conu-RA 224..1088 17..881 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 17:22:19 Download gff for BO04508.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 4749272..4749386 17..131 100 -> Plus
2R 4749446..4749513 132..199 100 -> Plus
2R 4754500..4754670 200..370 100 -> Plus
2R 4756171..4756259 371..459 100 -> Plus
2R 4756316..4756588 460..732 100 -> Plus
2R 4756655..4756803 733..881 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:57:48 Download gff for BO04508.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 636777..636891 17..131 100 -> Plus
arm_2R 636951..637018 132..199 100 -> Plus
arm_2R 642005..642175 200..370 100 -> Plus
arm_2R 643676..643764 371..459 100 -> Plus
arm_2R 643821..644093 460..732 100 -> Plus
arm_2R 644160..644308 733..881 100   Plus

BO04508.complete Sequence

1921 bp assembled on 2010-02-24

GenBank Submission: KX798682

> BO04508.complete
GAAGTTATCAGTCGACATGAACAGCAATACAGATCTCCATCATTCAGATG
ATCAGGACTTTTCGGAATTTCTCAATGAGTATTATCTGCAAAGCAATTCC
CAAAGTATCGAACCTGAAGCAAGTTACGAAGATGGAGAAATGGAAGCAGA
GTGGCTAGTTTCTGCTGGTTATCCAGAATTGACAAAACCGTTTGAACAAG
GGTTAGAGGTTTCTAAAAAGGACTTGGAACCCATACTGACTACTTTATCG
AAGCCCCATGCTGAAGCGATTGTACAACTAGTAAGGACTTTAAACAAAAC
AGTACGGGTGCGCACAAAAAGTCGGCCAAAACGGAAACCTGATATAAGGG
ATGTATTTCGCGAATTTGATGAACAAGGGACAGTTACACGCTCACGAAGT
GCCACTCCGGATTCCCTGGACTCTTTACAAATCGATGAAGCTTGGACCAA
CAATTCTTTACCGACTTTTGTAAATGTATATGAAAAAAATACCGAAACTG
CCATACAATGTGTAGAACAATCAAACGAAATATATTTAAAACAAAACCTG
CGACGAACCCCTAGCGCCCCGCCTAAAAGCGGCACCTATGCGGATATATT
TCGTGGTTCGCAAGTGCGATGTGATATACCTTTGTACTCGGCGGATGGTG
TAGAATTGCTTGGATATTCACGGATTGGCACCATACAATTTCCTCGGAAC
CGATCCGTCTCTGATCCATTTTGTTCTATTGGTCGATCAAAGGAGTCAAG
AAGTGAAAATGATGCACGATCACAAAAGAAAAAATCGAGTGAAGTGCTGT
CAGCCTCAGAGAATGAATGCGGTCGCCTTTTACCGATGCCCTACAATGTC
CTGAGCTTTGAAAGTATTTGTCGAGATTCTTCTAGTCTTGATAGCTGCGA
AGTCCTAGATACCTGTGATATCCCTTCAACGCTATTCACAGATGTCGTAT
TAATAAGCGAAACTGACATGAAACGTTTACAGACAATACTTTGGTTAGAG
TTAGCCACAATATTTGATCGCAACAAAGTTTCTTTAGATAAAAGAAAACC
TTTTAAGCGTCGTCGCAAAGAAGAGGGTAATCTTTTTGGGGTATCTATAA
ACGCTCTTATTCGTCGGGATCAGCAAGTTACTGGCACTGACTCATCTTTG
GTCCCACTATTTTTGGAAAAGCTAATTGGCGAACTTCTGCGACGTGGCTC
TAGAGAAGAAGGATTACTTCGAATAGGTGGTCATAAACAAAAGACTGAAT
TACTTTATAATGAATTAGAATCAACATTTTATCAAAATCCAGATAATCTA
GATAACCTCTTTCGCACAGCTACTGTTCATGAACTTAGTTCGTTGCTAAA
ACGATGGCTGCGCGAACTTCCTCAACCTTTGCTTACTAATGAGCTTATAC
AACTGTTTTATCAATGTCACACACTTCCATCAATAGATCAAATGAATGCA
CTATCGATTTTATGTCACCTGCTTCCGCCTGAAAATAGAAACACATTACG
TTCATTATTAAGCTTTTTTAATATTATAATTAATTTAAAAGATATAAACA
AAATGAATGTGCATAACGTAGCAACAATAATGGCACCGTCAATGTTTCCA
CCACGTTATATACATCCGAGTGACAATAACAGCATTGCAGAACAAGTAAG
AATGGCCGCTCAGTGTTGCCGTTTGACGAATATTTTAATCCTACGTGGCG
AAAAACTTTTCCAAGTACCAAACAATTTAATTGTGGAGTCACAGAAAACA
ATGATGGGTAAGAAAGGATGGCATCGGCATCGGAATTCAAATGAAATTAC
GGCAAAACCAAGCGGAAAGGCGAGCAATGTCGGCGTTGGACACGACTCTA
CAGTTATAAATAAATACTCAACCAATTTAAAGCATTTACATCCATTTGTT
ATTGCAAGCTTTCTAGACCAT

BO04508.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:27:09
Subject Length Description Subject Range Query Range Score Percent Strand
conu-RI 1890 CG17082-PI 1..1887 17..1903 9435 100 Plus
conu-RG 1890 CG17082-PG 1..1887 17..1903 9435 100 Plus
conu-RA 1890 CG17082-PA 1..1887 17..1903 9435 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:27:10
Subject Length Description Subject Range Query Range Score Percent Strand
conu-RI 2070 CG17082-RI 84..1970 17..1903 9435 100 Plus
conu-RG 2098 CG17082-RG 112..1998 17..1903 9435 100 Plus
conu-RA 2210 CG17082-RA 224..2110 17..1903 9435 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:27:07
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 4757234..4757749 1242..1757 2580 100 Plus
2R 25286936 2R 4756654..4757165 732..1243 2560 100 Plus
2R 25286936 2R 4756316..4756588 460..732 1365 100 Plus
2R 25286936 2R 4754500..4754671 200..371 860 100 Plus
2R 25286936 2R 4757801..4757948 1756..1903 740 100 Plus
2R 25286936 2R 4749272..4749386 17..131 575 100 Plus
2R 25286936 2R 4756171..4756259 371..459 445 100 Plus
2R 25286936 2R 4749444..4749514 130..200 355 100 Plus
Blast to na_te.dros performed 2014-11-28 04:27:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dbif\P-element_M 2935 Dbif\P-element_M P_M 2935bp Derived from X60990. 2504..2593 1486..1571 116 62.2 Plus

BO04508.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-24 09:36:33 Download gff for BO04508.complete
Subject Subject Range Query Range Percent Splice Strand
CG17082-RD 122..2008 17..1905 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:59:32 Download gff for BO04508.complete
Subject Subject Range Query Range Percent Splice Strand
CG17082-RD 105..1991 17..1905 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:29:04 Download gff for BO04508.complete
Subject Subject Range Query Range Percent Splice Strand
conu-RA 224..2110 17..1905 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:29:04 Download gff for BO04508.complete
Subject Subject Range Query Range Percent Splice Strand
2R 4757802..4757948 1757..1905 98   Plus
2R 4749272..4749386 17..131 100 -> Plus
2R 4749446..4749513 132..199 100 -> Plus
2R 4754500..4754670 200..370 100 -> Plus
2R 4756171..4756259 371..459 100 -> Plus
2R 4756316..4756588 460..732 100 -> Plus
2R 4756655..4757165 733..1243 100 -> Plus
2R 4757236..4757748 1244..1756 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:59:32 Download gff for BO04508.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 636777..636891 17..131 100 -> Plus
arm_2R 636951..637018 132..199 100 -> Plus
arm_2R 642005..642175 200..370 100 -> Plus
arm_2R 643676..643764 371..459 100 -> Plus
arm_2R 643821..644093 460..732 100 -> Plus
arm_2R 644160..644670 733..1243 100 -> Plus
arm_2R 644741..645253 1244..1756 100 -> Plus
arm_2R 645307..645453 1757..1905 98   Plus

BO04508.pep Sequence

Translation from 16 to 1921

> BO04508.pep
MNSNTDLHHSDDQDFSEFLNEYYLQSNSQSIEPEASYEDGEMEAEWLVSA
GYPELTKPFEQGLEVSKKDLEPILTTLSKPHAEAIVQLVRTLNKTVRVRT
KSRPKRKPDIRDVFREFDEQGTVTRSRSATPDSLDSLQIDEAWTNNSLPT
FVNVYEKNTETAIQCVEQSNEIYLKQNLRRTPSAPPKSGTYADIFRGSQV
RCDIPLYSADGVELLGYSRIGTIQFPRNRSVSDPFCSIGRSKESRSENDA
RSQKKKSSEVLSASENECGRLLPMPYNVLSFESICRDSSSLDSCEVLDTC
DIPSTLFTDVVLISETDMKRLQTILWLELATIFDRNKVSLDKRKPFKRRR
KEEGNLFGVSINALIRRDQQVTGTDSSLVPLFLEKLIGELLRRGSREEGL
LRIGGHKQKTELLYNELESTFYQNPDNLDNLFRTATVHELSSLLKRWLRE
LPQPLLTNELIQLFYQCHTLPSIDQMNALSILCHLLPPENRNTLRSLLSF
FNIIINLKDINKMNVHNVATIMAPSMFPPRYIHPSDNNSIAEQVRMAAQC
CRLTNILILRGEKLFQVPNNLIVESQKTMMGKKGWHRHRNSNEITAKPSG
KASNVGVGHDSTVINKYSTNLKHLHPFVIASFLDH

BO04508.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:22:01
Subject Length Description Subject Range Query Range Score Percent Strand
conu-PI 629 CG17082-PI 1..629 1..629 3251 100 Plus
conu-PG 629 CG17082-PG 1..629 1..629 3251 100 Plus
conu-PA 629 CG17082-PA 1..629 1..629 3251 100 Plus
conu-PD 629 CG17082-PD 1..629 1..629 3251 100 Plus
conu-PB 629 CG17082-PB 1..629 1..629 3251 100 Plus