Clone BO04513 Report

Search the DGRC for BO04513

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:45
Well:13
Vector:pDNR-Dual
Associated Gene/TranscriptFim-RA
Protein status:BO04513.pep: validated full length
Sequenced Size:1954

Clone Sequence Records

BO04513.3prime Sequence

914 bp (772 high quality bases) assembled on 2005-12-01

> BO04513.3prime
ATGGTCTAGAAAGCTTGCATTGCTGTTGTTGGCGGAGCTGTTGTGGTTGT
TCTGGTCCACACTGTCCATGTTGGGCACGTAGTCGAGGGCCATCATGCAG
GCGAAAACGGTCATCACCATTTTCGGCTTCACCTCGGTGATGTCCTCGGG
CAGGGCGTAGACACGGGCGCCGATCTTGCGGGCCATGGAGATGGCATACT
TGGCATTGGCCAGGTTATCCTCCTGTGTTCCGCTAGTGCGCACCAACTCG
TAGTTAATGCTGCCCTCCTTGATGGCATCGATCAGATCGATCACGATCTT
GCCATCGGCGATGGCCGGATCGTTGAAGTTACGCAGCTGCGACTGTTTGC
CTGCCTCCGACAGTCGGTTATTCACCCACTGGACGATCTCCTTCTCGATA
ATGGGGTTGCCAGTGTTGGCCAAGCGGGACAGAATGGACAGGGTGTAGGC
ACGCATAAGCTGCCAGATGAGAGCCAACGTCAGCGTGGCATTGCCATCGT
TTAGATCCTGGCCTGCGATTCCGACCAGCGAGAATTTGAGCTGCTTGCCC
AGATCCACCGCATAGTTGCAGTTCTCCAGCTTTTCCATGAACTTGCGCAG
CGGGCTGAAACGCTTGTGCACACGGCTCCAGTTGACAATACCCGGCTTGA
TGACGTCGAACAGCTGGAAAATGACCAGACCATCGGCCAAATCGGAGTAA
AGCCAGTTCACGTGCGGTGCCACGCCCATTGAGTTCATCCAATTGCGGTA
GGTCTTCTCTTCGCGCGTCTCCTCAATGGACTCGAGTCCCTCGATCTGCT
CGGGCTTGTCCAATCCTGGATGGTTGTTGAACAGATTTACCACGAAGGCT
AGATTTGATTTGAAGACTCCGTTGACGACATCCTGTGGGCGTGAGGAAGC
TGCGGGAGTTGAAC

BO04513.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:06:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG8649-PA 1923 Fim-RA 1084..1920 855..19 4135 99.7 Minus
CG8649-PC 1851 Fim-RC 1012..1848 855..19 4135 99.7 Minus
CG8649-PD 1926 Fim-RD 1087..1923 855..19 4135 99.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:08:16
Subject Length Description Subject Range Query Range Score Percent Strand
Fim-RD 3236 CG8649-RD 1372..2264 912..19 4340 99.2 Minus
Fim-RC 3269 CG8649-RC 1405..2297 912..19 4340 99.2 Minus
Fim-RA 3387 CG8649-RA 1523..2415 912..19 4340 99.2 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:08:10
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 17287256..17287534 474..752 1395 100 Plus
X 23542271 X 17286936..17287191 219..474 1280 100 Plus
X 23542271 X 17286676..17286878 19..221 1015 100 Plus
X 23542271 X 17287927..17288085 753..912 645 95 Plus
Blast to na_te.dros performed on 2015-02-12 01:08:13 has no hits.

BO04513.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:04:40 Download gff for BO04513.3prime
Subject Subject Range Query Range Percent Splice Strand
Fim-PA 1026..1923 18..914 98   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:18:27 Download gff for BO04513.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8649-PD 1029..1926 18..914 98   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 11:38:26 Download gff for BO04513.3prime
Subject Subject Range Query Range Percent Splice Strand
Fim-RA 1521..2420 13..914 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:04:06 Download gff for BO04513.3prime
Subject Subject Range Query Range Percent Splice Strand
Fim-RA 1521..2420 13..914 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 05:04:06 Download gff for BO04513.3prime
Subject Subject Range Query Range Percent Splice Strand
X 17286671..17286876 13..219 98 <- Plus
X 17286937..17287190 220..473 100 <- Plus
X 17287256..17287534 474..752 100 <- Plus
X 17287927..17288087 753..914 95   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 11:38:26 Download gff for BO04513.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 17181960..17182120 753..914 95   Plus
arm_X 17180704..17180909 13..219 98 <- Plus
arm_X 17180970..17181223 220..473 100 <- Plus
arm_X 17181289..17181567 474..752 100 <- Plus

BO04513.5prime Sequence

816 bp (763 high quality bases) assembled on 2005-12-01

> BO04513.5prime
GAAGTTATCAGTCGACATGGCAACACTTAACAAATTCACAAAAACGCTGT
CCATTGATGAAAAGGCGGAGATCAAGGAGAAATTCATAGAGTTGGATGCC
AACAAAGATGGCTTCATCGATCTGCACGAGCTAAAGGATGCCCTCAACCA
GGTGGGCTTCAAGCTGGCCGGCTACCAGGTGCGCGAAATGATTGACGAGT
ACAAGGGCAAACAGCTGACTGCCTTCCAGGGCAAATTGAATCTGGAGGAG
TTCGAGGCACTGTGCCTGGACCTGAAGAGCAAGGATGTGGCCAGCACATT
CAAGACGGTCGTCTCCAAGAAGGAGAACTTGGAGACCCTGGGCGGCATGT
CGAGCATTTCGTCGGAGGGCACCACCCATTCGGTGCGCCTCGAGGAGCAG
CTGGCCTTCTCCGACTGGATTAACTCGAATCTGGGCCACGACAAGGATCT
GCAACATCTGCTGCCCATCGATAGCGAGGGCAAGCGCTTGTATCTGAGCA
TCAAGGATGGTATTCTGCTGTGCAAAATTATCAACCACTCCTGCCCGGAC
ACAATCGATGAGCGTGCGATCAACAAGAAGAACCTCACCGTCTACCGGGA
GTTTGAGAACTTGACCCTGGCCTTGGTTTCCTCCCAGGCGATTGGATGCA
ACATCGTAAACATCGATGCCCACGATCTGGCCAAGGGCAAGCCACATCTG
GTGCTGGGTCTTCTCTGGCAGATCATCCGCATCGGTCTGTTTAGCCACAT
CACCCTGGACAGCTGTCCGGGGATTGGCTGGCCTACTCTTCGACAACGAA
CGTCTCGAGGATCTGA

BO04513.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:06:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG8649-PA 1923 Fim-RA 1..755 17..771 3775 100 Plus
CG8649-PC 1851 Fim-RC 3..683 91..771 3405 100 Plus
CG8649-PD 1926 Fim-RD 79..758 92..771 3400 100 Plus
CG8649-PA 1923 Fim-RA 753..799 770..816 235 100 Plus
CG8649-PC 1851 Fim-RC 681..727 770..816 235 100 Plus
CG8649-PD 1926 Fim-RD 756..802 770..816 235 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:47:42
Subject Length Description Subject Range Query Range Score Percent Strand
Fim-RA 3387 CG8649-RA 496..1294 17..816 3975 99.9 Plus
Fim-RC 3269 CG8649-RC 452..1176 91..816 3605 99.9 Plus
Fim-RD 3236 CG8649-RD 420..1143 92..816 3600 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:47:33
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 17288314..17289039 816..90 3585 99.9 Minus
X 23542271 X 17301360..17301434 91..17 375 100 Minus
Blast to na_te.dros performed on 2015-02-11 23:47:38 has no hits.

BO04513.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:04:41 Download gff for BO04513.5prime
Subject Subject Range Query Range Percent Splice Strand
Fim-PA 1..798 17..815 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:18:29 Download gff for BO04513.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8649-PA 1..798 17..815 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:36:31 Download gff for BO04513.5prime
Subject Subject Range Query Range Percent Splice Strand
Fim-RA 488..1293 9..815 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:54:09 Download gff for BO04513.5prime
Subject Subject Range Query Range Percent Splice Strand
Fim-RA 488..1293 9..815 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:54:09 Download gff for BO04513.5prime
Subject Subject Range Query Range Percent Splice Strand
X 17288315..17289037 92..815 99 <- Minus
X 17301360..17301442 9..91 96   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:36:31 Download gff for BO04513.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 17182348..17183070 92..815 99 <- Minus
arm_X 17195393..17195475 9..91 96   Minus

BO04513.complete Sequence

1954 bp (1954 high quality bases) assembled on 2006-08-21

GenBank Submission: FJ629786

> BO04513.complete
GAAGTTATCAGTCGACATGGCAACACTTAACAAATTCACAAAAACGCTGT
CCATTGATGAAAAGGCGGAGATCAAGGAGAAATTCATAGAGTTGGATGCC
AACAAAGATGGCTTCATCGATCTGCACGAGCTAAAGGATGCCCTCAACCA
GGTGGGCTTCAAGCTGGCCGGCTACCAGGTGCGCGAAATGATTGACGAGT
ACAAGGGCAAACAGCTGACTGCCTTCCAGGGCAAATTGAATCTGGAGGAG
TTCGAGGCACTGTGCCTGGACCTGAAGAGCAAGGATGTGGCCAGCACATT
CAAGACGGTCGTCTCCAAGAAGGAGAACTTGGAGACCCTGGGCGGCATGT
CGAGCATTTCGTCGGAGGGCACCACCCATTCGGTGCGCCTCGAGGAGCAG
CTGGCCTTCTCCGACTGGATTAACTCGAATCTGGGCCACGACAAGGATCT
GCAACATCTGCTGCCCATCGATAGCGAGGGCAAGCGCTTGTATCTGAGCA
TCAAGGATGGTATTCTGCTGTGCAAAATTATCAACCACTCCTGCCCGGAC
ACAATCGATGAGCGTGCGATCAACAAGAAGAACCTCACCGTCTACCGGGA
GTTTGAGAACTTGACCCTGGCCTTGGTTTCCTCCCAGGCGATTGGATGCA
ACATCGTAAACATCGATGCCCACGATCTGGCCAAGGGCAAGCCACATCTG
GTGCTGGGTCTTCTCTGGCAGATCATCCGCATCGGTCTGTTTAGCCACAT
CACCCTGGACAGCTGTCCGGGATTGGCTGGCCTACTCTTCGACAACGAAC
GTCTCGAGGATCTGATGAAGATGTCGCCGGAGGCCATCCTTTTGCGTTGG
GTCAACCATCATTTGGAGCGAGCCGGCATCTCGAGGCGGTGCACCAACTT
CCAGTCGGACATCGTCGATTCTGAGATCTATTCGCATTTGCTGAAGCAAA
TTGCCGGCAATGATGCTGATGTCAATCTGGATGCCCTGCGGGAATCCGAT
CTGCAGTCGCGCGCGGAGATCATGTTGCAGCAGGCCGCCAAGCTCAACTG
CCGCAGCTTCCTCACGCCACAGGATGTCGTCAACGGAGTCTACAAACTCA
ATCTAGCCTTCGTGGCTAATCTGTTCAACAACCATCCAGGATTGGACAAG
CCCGAGCAGATCGAGGGACTCGAGTCCATTGAGGAGACGCGCGAAGAGAA
GACCTACCGCAATTGGATGAACTCAATGGGCGTGGCACCGCACGTGAACT
GGCTTTACTCCGATTTGGCCGATGGTCTGGTCATTTTCCAGCTGTTCGAC
GTCATCAAGCCGGGTATTGTCAACTGGAGCCGTGTGCACAAGCGTTTCAG
CCCGCTGCGCAAGTTCATGGAAAAGCTGGAGAACTGCAACTATGCGGTGG
ATCTGGGCAAGCAGCTCAAATTCTCGCTGGTCGGAATCGCAGGCCAGGAT
CTAAACGATGGCAATGCCACGCTGACGTTGGCTCTCATCTGGCAGCTTAT
GCGTGCCTACACCCTGTCCATTCTGTCCCGCTTGGCCAACACTGGCAACC
CCATTATCGAGAAGGAGATCGTCCAGTGGGTGAATAACCGACTGTCGGAG
GCAGGCAAACAGTCGCAGCTGCGTAACTTCAACGATCCGGCCATCGCCGA
TGGCAAGATCGTGATCGATCTGATCGATGCCATCAAGGAGGGCAGCATTA
ACTACGAGTTGGTGCGCACTAGCGGAACACAGGAGGATAACCTGGCCAAT
GCCAAGTATGCCATCTCCATGGCCCGCAAGATCGGCGCCCGTGTCTACGC
CCTGCCCGAGGACATCACCGAGGTGAAGCCGAAAATGGTGATGACCGTTT
TCGCCTGCATGATGGCCCTCGACTACGTGCCCAACATGGACAGTGTGGAC
CAGAACAACCACAACAGCTCCGCCAACAACAGCAATGCAAGCTTTCTAGA
CCAT

BO04513.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:39:59
Subject Length Description Subject Range Query Range Score Percent Strand
Fim-RA 1923 CG8649-PA 1..1920 17..1936 9600 100 Plus
Fim-RC 1851 CG8649-PC 3..1848 91..1936 9230 100 Plus
Fim-RD 1926 CG8649-PD 79..1923 92..1936 9225 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:40:01
Subject Length Description Subject Range Query Range Score Percent Strand
Fim-RA 3387 CG8649-RA 496..2415 17..1936 9600 100 Plus
Fim-RC 3269 CG8649-RC 452..2297 91..1936 9230 100 Plus
Fim-RD 3236 CG8649-RD 420..2264 92..1936 9225 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:39:58
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 17287927..17289039 1202..90 5565 100 Minus
X 23542271 X 17287256..17287534 1481..1203 1395 100 Minus
X 23542271 X 17286936..17287191 1736..1481 1280 100 Minus
X 23542271 X 17286676..17286878 1936..1734 1015 100 Minus
X 23542271 X 17301360..17301434 91..17 375 100 Minus
Blast to na_te.dros performed on 2014-11-27 13:39:58 has no hits.

BO04513.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:54:36 Download gff for BO04513.complete
Subject Subject Range Query Range Percent Splice Strand
Fim-RA 1..1923 17..1937 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:53:08 Download gff for BO04513.complete
Subject Subject Range Query Range Percent Splice Strand
Fim-RA 545..2464 17..1938 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:31:38 Download gff for BO04513.complete
Subject Subject Range Query Range Percent Splice Strand
Fim-RA 496..2415 17..1938 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:54:36 Download gff for BO04513.complete
Subject Subject Range Query Range Percent Splice Strand
Fim-RA 537..2469 9..1942 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:23:44 Download gff for BO04513.complete
Subject Subject Range Query Range Percent Splice Strand
Fim-RA 496..2415 17..1938 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:23:44 Download gff for BO04513.complete
Subject Subject Range Query Range Percent Splice Strand
X 17287256..17287534 1203..1481 100 <- Minus
X 17286937..17287190 1482..1735 100 <- Minus
X 17286674..17286876 1736..1938 99 <- Minus
X 17287927..17289037 92..1202 100 <- Minus
X 17301360..17301434 17..91 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:31:38 Download gff for BO04513.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 17180707..17180909 1736..1938 99 <- Minus
arm_X 17180970..17181223 1482..1735 100 <- Minus
arm_X 17181289..17181567 1203..1481 100 <- Minus
arm_X 17181960..17183070 92..1202 100 <- Minus
arm_X 17195393..17195467 17..91 100   Minus

BO04513.pep Sequence

Translation from 16 to 1954

> BO04513.pep
MATLNKFTKTLSIDEKAEIKEKFIELDANKDGFIDLHELKDALNQVGFKL
AGYQVREMIDEYKGKQLTAFQGKLNLEEFEALCLDLKSKDVASTFKTVVS
KKENLETLGGMSSISSEGTTHSVRLEEQLAFSDWINSNLGHDKDLQHLLP
IDSEGKRLYLSIKDGILLCKIINHSCPDTIDERAINKKNLTVYREFENLT
LALVSSQAIGCNIVNIDAHDLAKGKPHLVLGLLWQIIRIGLFSHITLDSC
PGLAGLLFDNERLEDLMKMSPEAILLRWVNHHLERAGISRRCTNFQSDIV
DSEIYSHLLKQIAGNDADVNLDALRESDLQSRAEIMLQQAAKLNCRSFLT
PQDVVNGVYKLNLAFVANLFNNHPGLDKPEQIEGLESIEETREEKTYRNW
MNSMGVAPHVNWLYSDLADGLVIFQLFDVIKPGIVNWSRVHKRFSPLRKF
MEKLENCNYAVDLGKQLKFSLVGIAGQDLNDGNATLTLALIWQLMRAYTL
SILSRLANTGNPIIEKEIVQWVNNRLSEAGKQSQLRNFNDPAIADGKIVI
DLIDAIKEGSINYELVRTSGTQEDNLANAKYAISMARKIGARVYALPEDI
TEVKPKMVMTVFACMMALDYVPNMDSVDQNNHNSSANNSNASFLDH

BO04513.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:57:00
Subject Length Description Subject Range Query Range Score Percent Strand
Fim-PA 640 CG8649-PA 1..640 1..640 3285 100 Plus
Fim-PD 641 CG8649-PD 17..641 16..640 3171 98.7 Plus
Fim-PC 616 CG8649-PC 2..616 26..640 3164 100 Plus