Clone Sequence Records
BO04513.3prime Sequence
914 bp (772 high quality bases) assembled on 2005-12-01
> BO04513.3prime
ATGGTCTAGAAAGCTTGCATTGCTGTTGTTGGCGGAGCTGTTGTGGTTGT
TCTGGTCCACACTGTCCATGTTGGGCACGTAGTCGAGGGCCATCATGCAG
GCGAAAACGGTCATCACCATTTTCGGCTTCACCTCGGTGATGTCCTCGGG
CAGGGCGTAGACACGGGCGCCGATCTTGCGGGCCATGGAGATGGCATACT
TGGCATTGGCCAGGTTATCCTCCTGTGTTCCGCTAGTGCGCACCAACTCG
TAGTTAATGCTGCCCTCCTTGATGGCATCGATCAGATCGATCACGATCTT
GCCATCGGCGATGGCCGGATCGTTGAAGTTACGCAGCTGCGACTGTTTGC
CTGCCTCCGACAGTCGGTTATTCACCCACTGGACGATCTCCTTCTCGATA
ATGGGGTTGCCAGTGTTGGCCAAGCGGGACAGAATGGACAGGGTGTAGGC
ACGCATAAGCTGCCAGATGAGAGCCAACGTCAGCGTGGCATTGCCATCGT
TTAGATCCTGGCCTGCGATTCCGACCAGCGAGAATTTGAGCTGCTTGCCC
AGATCCACCGCATAGTTGCAGTTCTCCAGCTTTTCCATGAACTTGCGCAG
CGGGCTGAAACGCTTGTGCACACGGCTCCAGTTGACAATACCCGGCTTGA
TGACGTCGAACAGCTGGAAAATGACCAGACCATCGGCCAAATCGGAGTAA
AGCCAGTTCACGTGCGGTGCCACGCCCATTGAGTTCATCCAATTGCGGTA
GGTCTTCTCTTCGCGCGTCTCCTCAATGGACTCGAGTCCCTCGATCTGCT
CGGGCTTGTCCAATCCTGGATGGTTGTTGAACAGATTTACCACGAAGGCT
AGATTTGATTTGAAGACTCCGTTGACGACATCCTGTGGGCGTGAGGAAGC
TGCGGGAGTTGAAC
BO04513.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:06:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8649-PA | 1923 | Fim-RA | 1084..1920 | 855..19 | 4135 | 99.7 | Minus |
CG8649-PC | 1851 | Fim-RC | 1012..1848 | 855..19 | 4135 | 99.7 | Minus |
CG8649-PD | 1926 | Fim-RD | 1087..1923 | 855..19 | 4135 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:08:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Fim-RD | 3236 | CG8649-RD | 1372..2264 | 912..19 | 4340 | 99.2 | Minus |
Fim-RC | 3269 | CG8649-RC | 1405..2297 | 912..19 | 4340 | 99.2 | Minus |
Fim-RA | 3387 | CG8649-RA | 1523..2415 | 912..19 | 4340 | 99.2 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:08:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 17287256..17287534 | 474..752 | 1395 | 100 | Plus |
X | 23542271 | X | 17286936..17287191 | 219..474 | 1280 | 100 | Plus |
X | 23542271 | X | 17286676..17286878 | 19..221 | 1015 | 100 | Plus |
X | 23542271 | X | 17287927..17288085 | 753..912 | 645 | 95 | Plus |
Blast to na_te.dros performed on 2015-02-12 01:08:13 has no hits.
BO04513.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:04:40 Download gff for
BO04513.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Fim-PA | 1026..1923 | 18..914 | 98 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:18:27 Download gff for
BO04513.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8649-PD | 1029..1926 | 18..914 | 98 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 11:38:26 Download gff for
BO04513.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Fim-RA | 1521..2420 | 13..914 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:04:06 Download gff for
BO04513.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Fim-RA | 1521..2420 | 13..914 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 05:04:06 Download gff for
BO04513.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 17286671..17286876 | 13..219 | 98 | <- | Plus |
X | 17286937..17287190 | 220..473 | 100 | <- | Plus |
X | 17287256..17287534 | 474..752 | 100 | <- | Plus |
X | 17287927..17288087 | 753..914 | 95 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 11:38:26 Download gff for
BO04513.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 17181960..17182120 | 753..914 | 95 | | Plus |
arm_X | 17180704..17180909 | 13..219 | 98 | <- | Plus |
arm_X | 17180970..17181223 | 220..473 | 100 | <- | Plus |
arm_X | 17181289..17181567 | 474..752 | 100 | <- | Plus |
BO04513.5prime Sequence
816 bp (763 high quality bases) assembled on 2005-12-01
> BO04513.5prime
GAAGTTATCAGTCGACATGGCAACACTTAACAAATTCACAAAAACGCTGT
CCATTGATGAAAAGGCGGAGATCAAGGAGAAATTCATAGAGTTGGATGCC
AACAAAGATGGCTTCATCGATCTGCACGAGCTAAAGGATGCCCTCAACCA
GGTGGGCTTCAAGCTGGCCGGCTACCAGGTGCGCGAAATGATTGACGAGT
ACAAGGGCAAACAGCTGACTGCCTTCCAGGGCAAATTGAATCTGGAGGAG
TTCGAGGCACTGTGCCTGGACCTGAAGAGCAAGGATGTGGCCAGCACATT
CAAGACGGTCGTCTCCAAGAAGGAGAACTTGGAGACCCTGGGCGGCATGT
CGAGCATTTCGTCGGAGGGCACCACCCATTCGGTGCGCCTCGAGGAGCAG
CTGGCCTTCTCCGACTGGATTAACTCGAATCTGGGCCACGACAAGGATCT
GCAACATCTGCTGCCCATCGATAGCGAGGGCAAGCGCTTGTATCTGAGCA
TCAAGGATGGTATTCTGCTGTGCAAAATTATCAACCACTCCTGCCCGGAC
ACAATCGATGAGCGTGCGATCAACAAGAAGAACCTCACCGTCTACCGGGA
GTTTGAGAACTTGACCCTGGCCTTGGTTTCCTCCCAGGCGATTGGATGCA
ACATCGTAAACATCGATGCCCACGATCTGGCCAAGGGCAAGCCACATCTG
GTGCTGGGTCTTCTCTGGCAGATCATCCGCATCGGTCTGTTTAGCCACAT
CACCCTGGACAGCTGTCCGGGGATTGGCTGGCCTACTCTTCGACAACGAA
CGTCTCGAGGATCTGA
BO04513.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:06:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8649-PA | 1923 | Fim-RA | 1..755 | 17..771 | 3775 | 100 | Plus |
CG8649-PC | 1851 | Fim-RC | 3..683 | 91..771 | 3405 | 100 | Plus |
CG8649-PD | 1926 | Fim-RD | 79..758 | 92..771 | 3400 | 100 | Plus |
CG8649-PA | 1923 | Fim-RA | 753..799 | 770..816 | 235 | 100 | Plus |
CG8649-PC | 1851 | Fim-RC | 681..727 | 770..816 | 235 | 100 | Plus |
CG8649-PD | 1926 | Fim-RD | 756..802 | 770..816 | 235 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:47:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Fim-RA | 3387 | CG8649-RA | 496..1294 | 17..816 | 3975 | 99.9 | Plus |
Fim-RC | 3269 | CG8649-RC | 452..1176 | 91..816 | 3605 | 99.9 | Plus |
Fim-RD | 3236 | CG8649-RD | 420..1143 | 92..816 | 3600 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:47:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 17288314..17289039 | 816..90 | 3585 | 99.9 | Minus |
X | 23542271 | X | 17301360..17301434 | 91..17 | 375 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 23:47:38 has no hits.
BO04513.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:04:41 Download gff for
BO04513.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Fim-PA | 1..798 | 17..815 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:18:29 Download gff for
BO04513.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8649-PA | 1..798 | 17..815 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:36:31 Download gff for
BO04513.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Fim-RA | 488..1293 | 9..815 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:54:09 Download gff for
BO04513.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Fim-RA | 488..1293 | 9..815 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:54:09 Download gff for
BO04513.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 17288315..17289037 | 92..815 | 99 | <- | Minus |
X | 17301360..17301442 | 9..91 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:36:31 Download gff for
BO04513.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 17182348..17183070 | 92..815 | 99 | <- | Minus |
arm_X | 17195393..17195475 | 9..91 | 96 | | Minus |
BO04513.complete Sequence
1954 bp (1954 high quality bases) assembled on 2006-08-21
GenBank Submission: FJ629786
> BO04513.complete
GAAGTTATCAGTCGACATGGCAACACTTAACAAATTCACAAAAACGCTGT
CCATTGATGAAAAGGCGGAGATCAAGGAGAAATTCATAGAGTTGGATGCC
AACAAAGATGGCTTCATCGATCTGCACGAGCTAAAGGATGCCCTCAACCA
GGTGGGCTTCAAGCTGGCCGGCTACCAGGTGCGCGAAATGATTGACGAGT
ACAAGGGCAAACAGCTGACTGCCTTCCAGGGCAAATTGAATCTGGAGGAG
TTCGAGGCACTGTGCCTGGACCTGAAGAGCAAGGATGTGGCCAGCACATT
CAAGACGGTCGTCTCCAAGAAGGAGAACTTGGAGACCCTGGGCGGCATGT
CGAGCATTTCGTCGGAGGGCACCACCCATTCGGTGCGCCTCGAGGAGCAG
CTGGCCTTCTCCGACTGGATTAACTCGAATCTGGGCCACGACAAGGATCT
GCAACATCTGCTGCCCATCGATAGCGAGGGCAAGCGCTTGTATCTGAGCA
TCAAGGATGGTATTCTGCTGTGCAAAATTATCAACCACTCCTGCCCGGAC
ACAATCGATGAGCGTGCGATCAACAAGAAGAACCTCACCGTCTACCGGGA
GTTTGAGAACTTGACCCTGGCCTTGGTTTCCTCCCAGGCGATTGGATGCA
ACATCGTAAACATCGATGCCCACGATCTGGCCAAGGGCAAGCCACATCTG
GTGCTGGGTCTTCTCTGGCAGATCATCCGCATCGGTCTGTTTAGCCACAT
CACCCTGGACAGCTGTCCGGGATTGGCTGGCCTACTCTTCGACAACGAAC
GTCTCGAGGATCTGATGAAGATGTCGCCGGAGGCCATCCTTTTGCGTTGG
GTCAACCATCATTTGGAGCGAGCCGGCATCTCGAGGCGGTGCACCAACTT
CCAGTCGGACATCGTCGATTCTGAGATCTATTCGCATTTGCTGAAGCAAA
TTGCCGGCAATGATGCTGATGTCAATCTGGATGCCCTGCGGGAATCCGAT
CTGCAGTCGCGCGCGGAGATCATGTTGCAGCAGGCCGCCAAGCTCAACTG
CCGCAGCTTCCTCACGCCACAGGATGTCGTCAACGGAGTCTACAAACTCA
ATCTAGCCTTCGTGGCTAATCTGTTCAACAACCATCCAGGATTGGACAAG
CCCGAGCAGATCGAGGGACTCGAGTCCATTGAGGAGACGCGCGAAGAGAA
GACCTACCGCAATTGGATGAACTCAATGGGCGTGGCACCGCACGTGAACT
GGCTTTACTCCGATTTGGCCGATGGTCTGGTCATTTTCCAGCTGTTCGAC
GTCATCAAGCCGGGTATTGTCAACTGGAGCCGTGTGCACAAGCGTTTCAG
CCCGCTGCGCAAGTTCATGGAAAAGCTGGAGAACTGCAACTATGCGGTGG
ATCTGGGCAAGCAGCTCAAATTCTCGCTGGTCGGAATCGCAGGCCAGGAT
CTAAACGATGGCAATGCCACGCTGACGTTGGCTCTCATCTGGCAGCTTAT
GCGTGCCTACACCCTGTCCATTCTGTCCCGCTTGGCCAACACTGGCAACC
CCATTATCGAGAAGGAGATCGTCCAGTGGGTGAATAACCGACTGTCGGAG
GCAGGCAAACAGTCGCAGCTGCGTAACTTCAACGATCCGGCCATCGCCGA
TGGCAAGATCGTGATCGATCTGATCGATGCCATCAAGGAGGGCAGCATTA
ACTACGAGTTGGTGCGCACTAGCGGAACACAGGAGGATAACCTGGCCAAT
GCCAAGTATGCCATCTCCATGGCCCGCAAGATCGGCGCCCGTGTCTACGC
CCTGCCCGAGGACATCACCGAGGTGAAGCCGAAAATGGTGATGACCGTTT
TCGCCTGCATGATGGCCCTCGACTACGTGCCCAACATGGACAGTGTGGAC
CAGAACAACCACAACAGCTCCGCCAACAACAGCAATGCAAGCTTTCTAGA
CCAT
BO04513.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:39:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Fim-RA | 1923 | CG8649-PA | 1..1920 | 17..1936 | 9600 | 100 | Plus |
Fim-RC | 1851 | CG8649-PC | 3..1848 | 91..1936 | 9230 | 100 | Plus |
Fim-RD | 1926 | CG8649-PD | 79..1923 | 92..1936 | 9225 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:40:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Fim-RA | 3387 | CG8649-RA | 496..2415 | 17..1936 | 9600 | 100 | Plus |
Fim-RC | 3269 | CG8649-RC | 452..2297 | 91..1936 | 9230 | 100 | Plus |
Fim-RD | 3236 | CG8649-RD | 420..2264 | 92..1936 | 9225 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:39:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 17287927..17289039 | 1202..90 | 5565 | 100 | Minus |
X | 23542271 | X | 17287256..17287534 | 1481..1203 | 1395 | 100 | Minus |
X | 23542271 | X | 17286936..17287191 | 1736..1481 | 1280 | 100 | Minus |
X | 23542271 | X | 17286676..17286878 | 1936..1734 | 1015 | 100 | Minus |
X | 23542271 | X | 17301360..17301434 | 91..17 | 375 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:39:58 has no hits.
BO04513.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:54:36 Download gff for
BO04513.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Fim-RA | 1..1923 | 17..1937 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:53:08 Download gff for
BO04513.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Fim-RA | 545..2464 | 17..1938 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:31:38 Download gff for
BO04513.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Fim-RA | 496..2415 | 17..1938 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:54:36 Download gff for
BO04513.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Fim-RA | 537..2469 | 9..1942 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:23:44 Download gff for
BO04513.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Fim-RA | 496..2415 | 17..1938 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:23:44 Download gff for
BO04513.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 17287256..17287534 | 1203..1481 | 100 | <- | Minus |
X | 17286937..17287190 | 1482..1735 | 100 | <- | Minus |
X | 17286674..17286876 | 1736..1938 | 99 | <- | Minus |
X | 17287927..17289037 | 92..1202 | 100 | <- | Minus |
X | 17301360..17301434 | 17..91 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:31:38 Download gff for
BO04513.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 17180707..17180909 | 1736..1938 | 99 | <- | Minus |
arm_X | 17180970..17181223 | 1482..1735 | 100 | <- | Minus |
arm_X | 17181289..17181567 | 1203..1481 | 100 | <- | Minus |
arm_X | 17181960..17183070 | 92..1202 | 100 | <- | Minus |
arm_X | 17195393..17195467 | 17..91 | 100 | | Minus |
BO04513.pep Sequence
Translation from 16 to 1954
> BO04513.pep
MATLNKFTKTLSIDEKAEIKEKFIELDANKDGFIDLHELKDALNQVGFKL
AGYQVREMIDEYKGKQLTAFQGKLNLEEFEALCLDLKSKDVASTFKTVVS
KKENLETLGGMSSISSEGTTHSVRLEEQLAFSDWINSNLGHDKDLQHLLP
IDSEGKRLYLSIKDGILLCKIINHSCPDTIDERAINKKNLTVYREFENLT
LALVSSQAIGCNIVNIDAHDLAKGKPHLVLGLLWQIIRIGLFSHITLDSC
PGLAGLLFDNERLEDLMKMSPEAILLRWVNHHLERAGISRRCTNFQSDIV
DSEIYSHLLKQIAGNDADVNLDALRESDLQSRAEIMLQQAAKLNCRSFLT
PQDVVNGVYKLNLAFVANLFNNHPGLDKPEQIEGLESIEETREEKTYRNW
MNSMGVAPHVNWLYSDLADGLVIFQLFDVIKPGIVNWSRVHKRFSPLRKF
MEKLENCNYAVDLGKQLKFSLVGIAGQDLNDGNATLTLALIWQLMRAYTL
SILSRLANTGNPIIEKEIVQWVNNRLSEAGKQSQLRNFNDPAIADGKIVI
DLIDAIKEGSINYELVRTSGTQEDNLANAKYAISMARKIGARVYALPEDI
TEVKPKMVMTVFACMMALDYVPNMDSVDQNNHNSSANNSNASFLDH
BO04513.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:57:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Fim-PA | 640 | CG8649-PA | 1..640 | 1..640 | 3285 | 100 | Plus |
Fim-PD | 641 | CG8649-PD | 17..641 | 16..640 | 3171 | 98.7 | Plus |
Fim-PC | 616 | CG8649-PC | 2..616 | 26..640 | 3164 | 100 | Plus |