Clone Sequence Records
BO04514.3prime Sequence
896 bp (854 high quality bases) assembled on 2005-12-01
> BO04514.3prime
ATGGTCTAGAAAGCTTGCGTTTTTGCCCTTCTCCACACGGCCCGCCTTGA
CTCCATTGAGCTTCGGTTTGGTCTCCTGCTTGGCGGCGGGCTTCTTGGAC
TTCTTTTTCTTCTTCTCGAAGGCGCTGAAGTCAACAGTGTCGGAGTCGTC
CTCGTTGCCGTACTTCTCCATCAGGCGGTCCATTAGGGAGCCAAAGTTTG
ACTCGCGCTGATTGCGACGTGCCAGGATCATTTGCTGCAAATCGCCACCG
TTGTCGGCTAAATCCTGGTCGTCCTTCTCCTTCTGGCGGCGCTTCAAACG
CTCCTTGATCACCTTGGCCTCCTTGAATTCGCGCGCGTACTTCTGGTGGC
GCTTCTTGCGCTTGGCTGCCGGCTCCTCGGTAAAGATCTTGTACTCGGGC
ACCTCGCCGCTGGCAATCATATCCTGAACGATCTTCTGAATGCGCGGCTC
GTCCTCCACCTTCATGAAGGGCACATGGTTCATCAGATAGTTGATGCAAC
CCTTGCCGCCCAGATACGCCTTTTTCAGATCGGTGCGCTCCAGCTCCGAT
TCCACATACTCCTTTTCATAGTTGTTGATATCCTCCTCGGTGATGGGCTT
GAAGATTTTGCTCCACAACTCCAGCCACGACGACAGCTTGGACTCGCTCT
CATCGTCGTCGTCGATCACGCCCTGCTCGTCGTACAGCGCCCGCTTCTGC
GTGTCGGTAAGCACCTGGTAGAGCTTCGATAGCACCTTGAACTTCTCGGT
GGACTCCGCCTTCTGCTCCTCCGGCACTCGATCGGGATGAACGAGCAGCG
AGAGCTTGTGGTATGCCTTCTTCACCTCCTTCTCGCCGGCGCCCCGGGCC
AGCTCCATTAGCTTGTACACATCGCGCGTCCCCAAATACTTTTCGC
BO04514.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:06:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6693-PA | 900 | CG6693-RA | 20..897 | 896..19 | 4365 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:48:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6693-RB | 1250 | CG6693-RB | 133..1010 | 896..19 | 4375 | 99.9 | Minus |
| CG6693-RA | 1372 | CG6693-RA | 255..1132 | 896..19 | 4375 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:48:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 11220508..11221385 | 19..896 | 4375 | 99.9 | Plus |
Blast to na_te.dros performed 2015-02-11 23:48:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dsub\bilbo | 5540 | Dsub\bilbo 5540bp Derived from U73803 (Rel. 54, Last updated, Version 1). | 2061..2096 | 606..641 | 108 | 77.8 | Plus |
BO04514.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:04:42 Download gff for
BO04514.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6693-PA | 20..900 | 18..896 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:18:30 Download gff for
BO04514.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6693-PA | 20..900 | 18..896 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:36:34 Download gff for
BO04514.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6693-RA | 255..1132 | 19..896 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:56:05 Download gff for
BO04514.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6693-RA | 255..1132 | 19..896 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:56:05 Download gff for
BO04514.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 11220508..11221385 | 19..896 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:36:34 Download gff for
BO04514.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 7046230..7047107 | 19..896 | 99 | | Plus |
BO04514.5prime Sequence
835 bp (803 high quality bases) assembled on 2005-12-01
> BO04514.5prime
GAAGTTATCAGTCGACATGTCGACGCTGGAGCTGTGCGAAAAGTATTTTG
GGACGCGCGATGTGTACAAGCTAATGGAGCTGGCCCGGGGCGCCGGCGAG
AAGGAGGTGAAGAAGGCATACCACAAGCTCTCGCTGCTCGTTCATCCCGA
TCGAGTGCCGGAGGAGCAGAAGGCGGAGTCCACCGAGAAGTTCAAGGTGC
TATCGAAGCTCTACCAGGTGCTTACCGACACGCAGAAGCGGGCGCTGTAC
GACGAGCAGGGCGTGATCGACGACGACGATGAGAGCGAGTCCAAGCTGTC
GTCGTGGCTGGAGTTGTGGAGCAAAATCTTCAAGCCCATCACCGAGGAGG
ATATCAACAACTATGAAAAGGAGTATGTGGAATCGGAGCTGGAGCGCACC
GATCTGAAAAAGGCGTATCTGGGCGGCAAGGGTTGCATCAACTATCTGAT
GAACCATGTGCCCTTCATGAAGGTGGAGGACGAGCCGCGCATTCAGAAGA
TCGTTCAGGATATGATTGCCAGCGGCGAGGTGCCCGAGTACAAGATCTTT
ACCGAGGAGCCGGCAGCCAAGCGCAAGAAGCGCCACCAGAAGTACGCGCG
CGAATTCAAGGAGGCCAAGGTGATCAAGGAGCGTTTGAAGCGCCGCCAGA
AGGAGAAGGACGACCAGGATTTAGCCGACAACGGTGGCGATTTGCAGCAA
ATGATCCTGGCACGTCGCAATCAGCGCGAGTCAAACTTTGGCTCCCTAAT
GGACCGCCTGATGGAGAAGTACGGCAACGAGGACGACTCCGACACTGTTG
ACTTCAGCGCCTTCGAGAAGAAGAAAAAGAAGTCC
BO04514.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:06:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6693-PA | 900 | CG6693-RA | 1..819 | 17..835 | 4095 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:18:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6693-RB | 1250 | CG6693-RB | 114..932 | 17..835 | 4095 | 100 | Plus |
| CG6693-RA | 1372 | CG6693-RA | 236..1054 | 17..835 | 4095 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 15:18:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 11220586..11221404 | 835..17 | 4095 | 100 | Minus |
Blast to na_te.dros performed 2015-02-13 15:18:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dsub\bilbo | 5540 | Dsub\bilbo 5540bp Derived from U73803 (Rel. 54, Last updated, Version 1). | 2061..2096 | 326..291 | 108 | 77.8 | Minus |
BO04514.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:04:43 Download gff for
BO04514.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6693-PA | 1..819 | 17..835 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:18:32 Download gff for
BO04514.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6693-PA | 1..819 | 17..835 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:02:10 Download gff for
BO04514.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6693-RA | 229..1054 | 7..835 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:49:49 Download gff for
BO04514.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6693-RA | 229..1054 | 7..835 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 16:49:49 Download gff for
BO04514.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 11220586..11221411 | 7..835 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:02:10 Download gff for
BO04514.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 7046308..7047133 | 7..835 | 99 | | Minus |
BO04514.complete Sequence
931 bp (931 high quality bases) assembled on 2005-09-08
GenBank Submission: FJ629787
> BO04514.complete
GAAGTTATCAGTCGACATGTCGACGCTGGAGCTGTGCGAAAAGTATTTTG
GGACGCGCGATGTGTACAAGCTAATGGAGCTGGCCCGGGGCGCCGGCGAG
AAGGAGGTGAAGAAGGCATACCACAAGCTCTCGCTGCTCGTTCATCCCGA
TCGAGTGCCGGAGGAGCAGAAGGCGGAGTCCACCGAGAAGTTCAAGGTGC
TATCGAAGCTCTACCAGGTGCTTACCGACACGCAGAAGCGGGCGCTGTAC
GACGAGCAGGGCGTGATCGACGACGACGATGAGAGCGAGTCCAAGCTGTC
GTCGTGGCTGGAGTTGTGGAGCAAAATCTTCAAGCCCATCACCGAGGAGG
ATATCAACAACTATGAAAAGGAGTATGTGGAATCGGAGCTGGAGCGCACC
GATCTGAAAAAGGCGTATCTGGGCGGCAAGGGTTGCATCAACTATCTGAT
GAACCATGTGCCCTTCATGAAGGTGGAGGACGAGCCGCGCATTCAGAAGA
TCGTTCAGGATATGATTGCCAGCGGCGAGGTGCCCGAGTACAAGATCTTT
ACCGAGGAGCCGGCAGCCAAGCGCAAGAAGCGCCACCAGAAGTACGCGCG
CGAATTCAAGGAGGCCAAGGTGATCAAGGAGCGTTTGAAGCGCCGCCAGA
AGGAGAAGGACGACCAGGATTTAGCCGACAACGGTGGCGATTTGCAGCAA
ATGATCCTGGCACGTCGCAATCAGCGCGAGTCAAACTTTGGCTCCCTAAT
GGACCGCCTGATGGAGAAGTACGGCAACGAGGACGACTCCGACACTGTTG
ACTTCAGCGCCTTCGAGAAGAAGAAAAAGAAGTCCAAGAAGCCCGCCGCC
AAGCAGGAGACCAAACCGAAGCTCAATGGAGTCAAGGCGGGCCGTGTGGA
GAAGGGCAAAAACGCAAGCTTTCTAGACCAT
BO04514.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:57:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6693-RB | 900 | CG6693-PB | 1..897 | 17..913 | 4485 | 100 | Plus |
| CG6693-RA | 900 | CG6693-PA | 1..897 | 17..913 | 4485 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:57:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6693-RB | 1250 | CG6693-RB | 114..1010 | 17..913 | 4485 | 100 | Plus |
| CG6693-RA | 1372 | CG6693-RA | 236..1132 | 17..913 | 4485 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:57:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 11220508..11221404 | 913..17 | 4485 | 100 | Minus |
Blast to na_te.dros performed 2014-11-27 16:57:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dsub\bilbo | 5540 | Dsub\bilbo 5540bp Derived from U73803 (Rel. 54, Last updated, Version 1). | 2061..2096 | 326..291 | 108 | 77.8 | Minus |
BO04514.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:40:42 Download gff for
BO04514.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6693-RA | 1..900 | 17..914 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:10:11 Download gff for
BO04514.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6693-RA | 229..1132 | 7..913 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:01:12 Download gff for
BO04514.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6693-RA | 236..1132 | 17..915 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:40:42 Download gff for
BO04514.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6693-RA | 229..1132 | 7..913 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:31:05 Download gff for
BO04514.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6693-RA | 236..1132 | 17..915 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:31:05 Download gff for
BO04514.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 11220506..11221404 | 17..915 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:01:12 Download gff for
BO04514.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 7046228..7047126 | 17..915 | 99 | | Minus |
BO04514.pep Sequence
Translation from 16 to 931
> BO04514.pep
MSTLELCEKYFGTRDVYKLMELARGAGEKEVKKAYHKLSLLVHPDRVPEE
QKAESTEKFKVLSKLYQVLTDTQKRALYDEQGVIDDDDESESKLSSWLEL
WSKIFKPITEEDINNYEKEYVESELERTDLKKAYLGGKGCINYLMNHVPF
MKVEDEPRIQKIVQDMIASGEVPEYKIFTEEPAAKRKKRHQKYAREFKEA
KVIKERLKRRQKEKDDQDLADNGGDLQQMILARRNQRESNFGSLMDRLME
KYGNEDDSDTVDFSAFEKKKKKSKKPAAKQETKPKLNGVKAGRVEKGKNA
SFLDH
BO04514.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:35:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6693-PB | 299 | CG6693-PB | 1..299 | 1..299 | 1540 | 100 | Plus |
| CG6693-PA | 299 | CG6693-PA | 1..299 | 1..299 | 1540 | 100 | Plus |
| mrj-PA | 259 | CG8448-PA | 3..80 | 15..93 | 171 | 43 | Plus |
| mrj-PC | 259 | CG8448-PC | 3..80 | 15..93 | 171 | 43 | Plus |
| mrj-PB | 259 | CG8448-PB | 3..80 | 15..93 | 171 | 43 | Plus |
