Clone Sequence Records
BO04516.3prime Sequence
890 bp (755 high quality bases) assembled on 2005-12-01
> BO04516.3prime
ATGGTCTAGAAAGCTTGCGTCCGCGATCAGGGGCTTGCCGTTCTGCTTCT
CCTTGTCCTTGTCCAATTGCTCCAAGAGTATAGCTGGATTGGGTTGACCC
TGATGGGTCTTCTGCTTCAGCATTGTCCAGTCGTAGATGTAGTCATACTG
ATGGTTCAGCGTTCTGAACAGTATGCGGAACAATTGACGTAGGTACATGT
AATCTGGCTGCTCCTCGAAGCGCAGGCTACGACAATAGTTCAGATACATG
GAGAACTCGGCCGGCGAGCCCTTGCAGAGGACCTCGATGGGCGTGGACAT
CTTCTTTTCGGAGATCTTCTCGTATTTCTGCTGCTTGGTGTTGGCCTTCA
TGCCTTGCCATGGCAGTACGCCGCGATTGAAGTACATCATCACGTATCCA
AGCGATTCCATGTCGTCACGCCGCGACTGCTCGATGCCCAGATGGGCATT
GATCGAGGCATAGCGGGCAGTGCCGGTGAGGTTCTTGTCCTCGCGGTAAA
CGATGTGATGGCGCGTGTGCGGATCGCGGAACTTCTTGGCCAGACCGAAA
TCGATCAGGAACAGCTTATTGCAGTGCCGACCAATGCCCATTAGGAAGTT
ATCCGGCTTGATGTCGCGATGGATGAAGCACTTGAGATGGATGTACTCCA
AGCGTCCGATCATCTGGTCGACGAGCATCAGAACCGTTTTGATTGTGAAA
TGGCGCGTACAGAAATTGAACAGATCCTCCAGCGAGGGTCCCAGCAGGTC
CATGACCAGGGTGTTGAAGTTCTTTTCCTTGCCATGGTGACGTATACGAG
GGAATCCAACGCCGCCGCTCAGAATGCGGTACAGCTTGGCCTCGTACAAC
AGCTGCGGATGGCGGGCGTGGGCGCTCTCCATCTTGATGG
BO04516.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:06:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2028-PB | 1014 | CkIalpha-RB | 140..1011 | 890..19 | 4360 | 100 | Minus |
CG2028-PC | 1014 | CkIalpha-RC | 140..1011 | 890..19 | 4360 | 100 | Minus |
CG2028-PA | 1014 | CkIalpha-RA | 140..1011 | 890..19 | 4360 | 100 | Minus |
CG2048-PA | 1323 | dco-RA | 369..410 | 628..587 | 185 | 97.6 | Minus |
CG2048-PB | 1323 | dco-RB | 369..410 | 628..587 | 185 | 97.6 | Minus |
CG2048-PC | 1323 | dco-RC | 369..410 | 628..587 | 185 | 97.6 | Minus |
CG2048-PA | 1323 | dco-RA | 509..548 | 488..449 | 150 | 95 | Minus |
CG2048-PB | 1323 | dco-RB | 509..548 | 488..449 | 150 | 95 | Minus |
CG2048-PC | 1323 | dco-RC | 509..548 | 488..449 | 150 | 95 | Minus |
CG2577-PA | 1035 | CG2577-RA | 403..434 | 618..587 | 135 | 96.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:28:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CkIalpha-RG | 1997 | CG2028-RG | 341..1212 | 890..19 | 4360 | 100 | Minus |
CkIalpha-RF | 1997 | CG2028-RF | 341..1212 | 890..19 | 4360 | 100 | Minus |
CkIalpha-RD | 2232 | CG2028-RD | 576..1447 | 890..19 | 4360 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:28:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 12655438..12656152 | 890..176 | 3575 | 100 | Minus |
X | 23542271 | X | 12656333..12656490 | 176..19 | 790 | 100 | Minus |
3R | 32079331 | 3R | 31057085..31057613 | 230..758 | 665 | 75 | Plus |
2L | 23513712 | 2L | 17555095..17555188 | 534..627 | 230 | 83 | Plus |
Blast to na_te.dros performed on 2015-02-10 17:28:50 has no hits.
BO04516.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:04:46 Download gff for
BO04516.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2028-PC | 140..1014 | 15..890 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:18:37 Download gff for
BO04516.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2028-PA | 140..1014 | 15..890 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 02:41:55 Download gff for
BO04516.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CkIalpha-RA | 477..1352 | 14..890 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:45:32 Download gff for
BO04516.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CkIalpha-RD | 576..1451 | 14..890 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:45:32 Download gff for
BO04516.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 12655438..12656152 | 176..890 | 100 | -> | Minus |
X | 12656334..12656494 | 14..175 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 02:41:55 Download gff for
BO04516.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 12549471..12550185 | 176..890 | 100 | -> | Minus |
arm_X | 12550367..12550527 | 14..175 | 98 | | Minus |
BO04516.5prime Sequence
836 bp (713 high quality bases) assembled on 2005-12-01
> BO04516.5prime
GAAGTTATCAGTCGACATGGACAAGATGCGGATATTGAAGGAAAGTCGCC
CCGAGATAATCGTCGGTGGCAAATATCGGGTGATCAGGAAGATTGGAAGC
GGATCGTTTGGCGACATTTACCTGGGCATGAGCATCCAGAGCGGCGAAGA
AGTGGCCATCAAGATGGAGAGCGCCCACGCCCGCCATCCGCAGCTGTTGT
ACGAGGCCAAGCTGTACCGCATTCTGAGCGGCGGCGTTGGATTCCCTCGT
ATACGTCACCATGGCAAGGAAAAGAACTTCAACACCCTGGTCATGGACCT
GCTGGGACCCTCGCTGGAGGATCTGTTCAATTTCTGTACGCGCCATTTCA
CAATCAAAACGGTTCTGATGCTCGTCGACCAGATGATCGGACGCTTGGAG
TACATCCATCTCAAGTGCTTCATCCATCGCGACATCAAGCCGGATAACTT
CCTAATGGGCATTGGTCGGCACTGCAATAAGCTGTTCCTGATCGATTTCG
GTCTGGCCAAGAAGTTCCGCGATCCGCACACGCGCCATCACATCGTTTAC
CGCGAGGACAAGAACCTCACCGGCACTGCCCGCTATGCCTCGATCAATGC
CCATCTGGGCATCGAGCAGTCGCGGCGTGACGACATGGAATCGCTTGGAT
ACGTGATGATGTACTTCAATCGCGGCGTACTGCCATGGCAAGGCATGAAG
GCCAACACCAAGCAGCAGAAATACGAGAAGATCTCCGAAAAGAAGATGTC
CACGCCCATCGAGGTCCTCTGCAAGGGCTCGCCGGCCGAGTTCTCCATGT
ATCTGAACTATTGTCGTAGCCTGCGCTTCGAGGAGC
BO04516.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:06:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2028-PB | 1014 | CkIalpha-RB | 1..820 | 17..836 | 4100 | 100 | Plus |
CG2028-PC | 1014 | CkIalpha-RC | 1..820 | 17..836 | 4100 | 100 | Plus |
CG2028-PA | 1014 | CkIalpha-RA | 1..820 | 17..836 | 4100 | 100 | Plus |
CG2048-PA | 1323 | dco-RA | 369..410 | 418..459 | 185 | 97.6 | Plus |
CG2048-PB | 1323 | dco-RB | 369..410 | 418..459 | 185 | 97.6 | Plus |
CG2048-PC | 1323 | dco-RC | 369..410 | 418..459 | 185 | 97.6 | Plus |
CG2048-PA | 1323 | dco-RA | 509..548 | 558..597 | 150 | 95 | Plus |
CG2048-PB | 1323 | dco-RB | 509..548 | 558..597 | 150 | 95 | Plus |
CG2048-PC | 1323 | dco-RC | 509..548 | 558..597 | 150 | 95 | Plus |
CG2577-PA | 1035 | CG2577-RA | 403..434 | 428..459 | 135 | 96.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:45:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CkIalpha-RG | 1997 | CG2028-RG | 202..1021 | 17..836 | 4100 | 100 | Plus |
CkIalpha-RF | 1997 | CG2028-RF | 202..1021 | 17..836 | 4100 | 100 | Plus |
CkIalpha-RD | 2232 | CG2028-RD | 437..1256 | 17..836 | 4100 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:45:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 12655377..12656118 | 95..836 | 3710 | 100 | Plus |
3R | 32079331 | 3R | 31057085..31057613 | 816..288 | 665 | 75 | Minus |
X | 23542271 | X | 12655238..12655317 | 17..96 | 400 | 100 | Plus |
2L | 23513712 | 2L | 17555095..17555188 | 512..419 | 230 | 83 | Minus |
Blast to na_te.dros performed on 2015-02-11 04:45:36 has no hits.
BO04516.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:04:47 Download gff for
BO04516.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2028-PC | 1..820 | 17..836 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:18:38 Download gff for
BO04516.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2028-PA | 1..820 | 17..836 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:13:06 Download gff for
BO04516.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CkIalpha-RA | 334..1157 | 9..836 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:26:33 Download gff for
BO04516.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CkIalpha-RD | 433..1256 | 9..836 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 09:26:33 Download gff for
BO04516.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 12655234..12655316 | 9..95 | 95 | -> | Plus |
X | 12655378..12656118 | 96..836 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:13:06 Download gff for
BO04516.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 12549267..12549349 | 9..95 | 95 | -> | Plus |
arm_X | 12549411..12550151 | 96..836 | 100 | | Plus |
BO04516.complete Sequence
1045 bp (1045 high quality bases) assembled on 2005-09-08
GenBank Submission: FJ629788
> BO04516.complete
GAAGTTATCAGTCGACATGGACAAGATGCGGATATTGAAGGAAAGTCGCC
CCGAGATAATCGTCGGTGGCAAATATCGGGTGATCAGGAAGATTGGAAGC
GGATCGTTTGGCGACATTTACCTGGGCATGAGCATCCAGAGCGGCGAAGA
AGTGGCCATCAAGATGGAGAGCGCCCACGCCCGCCATCCGCAGCTGTTGT
ACGAGGCCAAGCTGTACCGCATTCTGAGCGGCGGCGTTGGATTCCCTCGT
ATACGTCACCATGGCAAGGAAAAGAACTTCAACACCCTGGTCATGGACCT
GCTGGGACCCTCGCTGGAGGATCTGTTCAATTTCTGTACGCGCCATTTCA
CAATCAAAACGGTTCTGATGCTCGTCGACCAGATGATCGGACGCTTGGAG
TACATCCATCTCAAGTGCTTCATCCATCGCGACATCAAGCCGGATAACTT
CCTAATGGGCATTGGTCGGCACTGCAATAAGCTGTTCCTGATCGATTTCG
GTCTGGCCAAGAAGTTCCGCGATCCGCACACGCGCCATCACATCGTTTAC
CGCGAGGACAAGAACCTCACCGGCACTGCCCGCTATGCCTCGATCAATGC
CCATCTGGGCATCGAGCAGTCGCGGCGTGACGACATGGAATCGCTTGGAT
ACGTGATGATGTACTTCAATCGCGGCGTACTGCCATGGCAAGGCATGAAG
GCCAACACCAAGCAGCAGAAATACGAGAAGATCTCCGAAAAGAAGATGTC
CACGCCCATCGAGGTCCTCTGCAAGGGCTCGCCGGCCGAGTTCTCCATGT
ATCTGAACTATTGTCGTAGCCTGCGCTTCGAGGAGCAGCCAGATTACATG
TACCTACGTCAATTGTTCCGCATACTGTTCAGAACGCTGAACCATCAGTA
TGACTACATCTACGACTGGACAATGCTGAAGCAGAAGACCCATCAGGGTC
AACCCAATCCAGCTATACTCTTGGAGCAATTGGACAAGGACAAGGAGAAG
CAGAACGGCAAGCCCCTGATCGCGGACGCAAGCTTTCTAGACCAT
BO04516.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:17:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CkIalpha-RG | 1014 | CG2028-PG | 1..1011 | 17..1027 | 5055 | 100 | Plus |
CkIalpha-RF | 1014 | CG2028-PF | 1..1011 | 17..1027 | 5055 | 100 | Plus |
CkIalpha-RD | 1014 | CG2028-PD | 1..1011 | 17..1027 | 5055 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:17:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CkIalpha-RG | 1997 | CG2028-RG | 202..1212 | 17..1027 | 5055 | 100 | Plus |
CkIalpha-RF | 1997 | CG2028-RF | 202..1212 | 17..1027 | 5055 | 100 | Plus |
CkIalpha-RD | 2232 | CG2028-RD | 437..1447 | 17..1027 | 5055 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:17:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 12655377..12656152 | 95..870 | 3880 | 100 | Plus |
X | 23542271 | X | 12656333..12656490 | 870..1027 | 790 | 100 | Plus |
3R | 32079331 | 3R | 31057085..31057613 | 816..288 | 665 | 75 | Minus |
X | 23542271 | X | 12655238..12655317 | 17..96 | 400 | 100 | Plus |
2L | 23513712 | 2L | 17555095..17555188 | 512..419 | 230 | 83 | Minus |
Blast to na_te.dros performed on 2014-11-27 01:17:04 has no hits.
BO04516.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:40:24 Download gff for
BO04516.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CkIalpha-RA | 1..1014 | 17..1031 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:09:36 Download gff for
BO04516.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CkIalpha-RA | 278..1296 | 9..1032 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:50:09 Download gff for
BO04516.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CkIalpha-RA | 338..1348 | 17..1029 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:40:24 Download gff for
BO04516.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CkIalpha-RA | 278..1296 | 9..1032 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:22:33 Download gff for
BO04516.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CkIalpha-RD | 437..1447 | 17..1029 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:22:33 Download gff for
BO04516.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 12655238..12655316 | 17..95 | 100 | -> | Plus |
X | 12655378..12656152 | 96..870 | 100 | -> | Plus |
X | 12656334..12656490 | 871..1029 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:50:09 Download gff for
BO04516.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 12549271..12549349 | 17..95 | 100 | -> | Plus |
arm_X | 12549411..12550185 | 96..870 | 100 | -> | Plus |
arm_X | 12550367..12550523 | 871..1029 | 98 | | Plus |
BO04516.pep Sequence
Translation from 16 to 1045
> BO04516.pep
MDKMRILKESRPEIIVGGKYRVIRKIGSGSFGDIYLGMSIQSGEEVAIKM
ESAHARHPQLLYEAKLYRILSGGVGFPRIRHHGKEKNFNTLVMDLLGPSL
EDLFNFCTRHFTIKTVLMLVDQMIGRLEYIHLKCFIHRDIKPDNFLMGIG
RHCNKLFLIDFGLAKKFRDPHTRHHIVYREDKNLTGTARYASINAHLGIE
QSRRDDMESLGYVMMYFNRGVLPWQGMKANTKQQKYEKISEKKMSTPIEV
LCKGSPAEFSMYLNYCRSLRFEEQPDYMYLRQLFRILFRTLNHQYDYIYD
WTMLKQKTHQGQPNPAILLEQLDKDKEKQNGKPLIADASFLDH
BO04516.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:34:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CkIalpha-PG | 337 | CG2028-PG | 1..337 | 1..337 | 1790 | 100 | Plus |
CkIalpha-PF | 337 | CG2028-PF | 1..337 | 1..337 | 1790 | 100 | Plus |
CkIalpha-PD | 337 | CG2028-PD | 1..337 | 1..337 | 1790 | 100 | Plus |
CkIalpha-PE | 337 | CG2028-PE | 1..337 | 1..337 | 1790 | 100 | Plus |
CkIalpha-PA | 337 | CG2028-PA | 1..337 | 1..337 | 1790 | 100 | Plus |