Clone BO04516 Report

Search the DGRC for BO04516

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:45
Well:16
Vector:pDNR-Dual
Associated Gene/TranscriptCkIalpha-RA
Protein status:BO04516.pep: validated full length
Sequenced Size:1045

Clone Sequence Records

BO04516.3prime Sequence

890 bp (755 high quality bases) assembled on 2005-12-01

> BO04516.3prime
ATGGTCTAGAAAGCTTGCGTCCGCGATCAGGGGCTTGCCGTTCTGCTTCT
CCTTGTCCTTGTCCAATTGCTCCAAGAGTATAGCTGGATTGGGTTGACCC
TGATGGGTCTTCTGCTTCAGCATTGTCCAGTCGTAGATGTAGTCATACTG
ATGGTTCAGCGTTCTGAACAGTATGCGGAACAATTGACGTAGGTACATGT
AATCTGGCTGCTCCTCGAAGCGCAGGCTACGACAATAGTTCAGATACATG
GAGAACTCGGCCGGCGAGCCCTTGCAGAGGACCTCGATGGGCGTGGACAT
CTTCTTTTCGGAGATCTTCTCGTATTTCTGCTGCTTGGTGTTGGCCTTCA
TGCCTTGCCATGGCAGTACGCCGCGATTGAAGTACATCATCACGTATCCA
AGCGATTCCATGTCGTCACGCCGCGACTGCTCGATGCCCAGATGGGCATT
GATCGAGGCATAGCGGGCAGTGCCGGTGAGGTTCTTGTCCTCGCGGTAAA
CGATGTGATGGCGCGTGTGCGGATCGCGGAACTTCTTGGCCAGACCGAAA
TCGATCAGGAACAGCTTATTGCAGTGCCGACCAATGCCCATTAGGAAGTT
ATCCGGCTTGATGTCGCGATGGATGAAGCACTTGAGATGGATGTACTCCA
AGCGTCCGATCATCTGGTCGACGAGCATCAGAACCGTTTTGATTGTGAAA
TGGCGCGTACAGAAATTGAACAGATCCTCCAGCGAGGGTCCCAGCAGGTC
CATGACCAGGGTGTTGAAGTTCTTTTCCTTGCCATGGTGACGTATACGAG
GGAATCCAACGCCGCCGCTCAGAATGCGGTACAGCTTGGCCTCGTACAAC
AGCTGCGGATGGCGGGCGTGGGCGCTCTCCATCTTGATGG

BO04516.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:06:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG2028-PB 1014 CkIalpha-RB 140..1011 890..19 4360 100 Minus
CG2028-PC 1014 CkIalpha-RC 140..1011 890..19 4360 100 Minus
CG2028-PA 1014 CkIalpha-RA 140..1011 890..19 4360 100 Minus
CG2048-PA 1323 dco-RA 369..410 628..587 185 97.6 Minus
CG2048-PB 1323 dco-RB 369..410 628..587 185 97.6 Minus
CG2048-PC 1323 dco-RC 369..410 628..587 185 97.6 Minus
CG2048-PA 1323 dco-RA 509..548 488..449 150 95 Minus
CG2048-PB 1323 dco-RB 509..548 488..449 150 95 Minus
CG2048-PC 1323 dco-RC 509..548 488..449 150 95 Minus
CG2577-PA 1035 CG2577-RA 403..434 618..587 135 96.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:28:55
Subject Length Description Subject Range Query Range Score Percent Strand
CkIalpha-RG 1997 CG2028-RG 341..1212 890..19 4360 100 Minus
CkIalpha-RF 1997 CG2028-RF 341..1212 890..19 4360 100 Minus
CkIalpha-RD 2232 CG2028-RD 576..1447 890..19 4360 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:28:45
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 12655438..12656152 890..176 3575 100 Minus
X 23542271 X 12656333..12656490 176..19 790 100 Minus
3R 32079331 3R 31057085..31057613 230..758 665 75 Plus
2L 23513712 2L 17555095..17555188 534..627 230 83 Plus
Blast to na_te.dros performed on 2015-02-10 17:28:50 has no hits.

BO04516.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:04:46 Download gff for BO04516.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2028-PC 140..1014 15..890 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:18:37 Download gff for BO04516.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2028-PA 140..1014 15..890 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 02:41:55 Download gff for BO04516.3prime
Subject Subject Range Query Range Percent Splice Strand
CkIalpha-RA 477..1352 14..890 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:45:32 Download gff for BO04516.3prime
Subject Subject Range Query Range Percent Splice Strand
CkIalpha-RD 576..1451 14..890 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:45:32 Download gff for BO04516.3prime
Subject Subject Range Query Range Percent Splice Strand
X 12655438..12656152 176..890 100 -> Minus
X 12656334..12656494 14..175 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 02:41:55 Download gff for BO04516.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 12549471..12550185 176..890 100 -> Minus
arm_X 12550367..12550527 14..175 98   Minus

BO04516.5prime Sequence

836 bp (713 high quality bases) assembled on 2005-12-01

> BO04516.5prime
GAAGTTATCAGTCGACATGGACAAGATGCGGATATTGAAGGAAAGTCGCC
CCGAGATAATCGTCGGTGGCAAATATCGGGTGATCAGGAAGATTGGAAGC
GGATCGTTTGGCGACATTTACCTGGGCATGAGCATCCAGAGCGGCGAAGA
AGTGGCCATCAAGATGGAGAGCGCCCACGCCCGCCATCCGCAGCTGTTGT
ACGAGGCCAAGCTGTACCGCATTCTGAGCGGCGGCGTTGGATTCCCTCGT
ATACGTCACCATGGCAAGGAAAAGAACTTCAACACCCTGGTCATGGACCT
GCTGGGACCCTCGCTGGAGGATCTGTTCAATTTCTGTACGCGCCATTTCA
CAATCAAAACGGTTCTGATGCTCGTCGACCAGATGATCGGACGCTTGGAG
TACATCCATCTCAAGTGCTTCATCCATCGCGACATCAAGCCGGATAACTT
CCTAATGGGCATTGGTCGGCACTGCAATAAGCTGTTCCTGATCGATTTCG
GTCTGGCCAAGAAGTTCCGCGATCCGCACACGCGCCATCACATCGTTTAC
CGCGAGGACAAGAACCTCACCGGCACTGCCCGCTATGCCTCGATCAATGC
CCATCTGGGCATCGAGCAGTCGCGGCGTGACGACATGGAATCGCTTGGAT
ACGTGATGATGTACTTCAATCGCGGCGTACTGCCATGGCAAGGCATGAAG
GCCAACACCAAGCAGCAGAAATACGAGAAGATCTCCGAAAAGAAGATGTC
CACGCCCATCGAGGTCCTCTGCAAGGGCTCGCCGGCCGAGTTCTCCATGT
ATCTGAACTATTGTCGTAGCCTGCGCTTCGAGGAGC

BO04516.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:06:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG2028-PB 1014 CkIalpha-RB 1..820 17..836 4100 100 Plus
CG2028-PC 1014 CkIalpha-RC 1..820 17..836 4100 100 Plus
CG2028-PA 1014 CkIalpha-RA 1..820 17..836 4100 100 Plus
CG2048-PA 1323 dco-RA 369..410 418..459 185 97.6 Plus
CG2048-PB 1323 dco-RB 369..410 418..459 185 97.6 Plus
CG2048-PC 1323 dco-RC 369..410 418..459 185 97.6 Plus
CG2048-PA 1323 dco-RA 509..548 558..597 150 95 Plus
CG2048-PB 1323 dco-RB 509..548 558..597 150 95 Plus
CG2048-PC 1323 dco-RC 509..548 558..597 150 95 Plus
CG2577-PA 1035 CG2577-RA 403..434 428..459 135 96.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:45:38
Subject Length Description Subject Range Query Range Score Percent Strand
CkIalpha-RG 1997 CG2028-RG 202..1021 17..836 4100 100 Plus
CkIalpha-RF 1997 CG2028-RF 202..1021 17..836 4100 100 Plus
CkIalpha-RD 2232 CG2028-RD 437..1256 17..836 4100 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:45:31
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 12655377..12656118 95..836 3710 100 Plus
3R 32079331 3R 31057085..31057613 816..288 665 75 Minus
X 23542271 X 12655238..12655317 17..96 400 100 Plus
2L 23513712 2L 17555095..17555188 512..419 230 83 Minus
Blast to na_te.dros performed on 2015-02-11 04:45:36 has no hits.

BO04516.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:04:47 Download gff for BO04516.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2028-PC 1..820 17..836 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:18:38 Download gff for BO04516.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2028-PA 1..820 17..836 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:13:06 Download gff for BO04516.5prime
Subject Subject Range Query Range Percent Splice Strand
CkIalpha-RA 334..1157 9..836 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:26:33 Download gff for BO04516.5prime
Subject Subject Range Query Range Percent Splice Strand
CkIalpha-RD 433..1256 9..836 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 09:26:33 Download gff for BO04516.5prime
Subject Subject Range Query Range Percent Splice Strand
X 12655234..12655316 9..95 95 -> Plus
X 12655378..12656118 96..836 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:13:06 Download gff for BO04516.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 12549267..12549349 9..95 95 -> Plus
arm_X 12549411..12550151 96..836 100   Plus

BO04516.complete Sequence

1045 bp (1045 high quality bases) assembled on 2005-09-08

GenBank Submission: FJ629788

> BO04516.complete
GAAGTTATCAGTCGACATGGACAAGATGCGGATATTGAAGGAAAGTCGCC
CCGAGATAATCGTCGGTGGCAAATATCGGGTGATCAGGAAGATTGGAAGC
GGATCGTTTGGCGACATTTACCTGGGCATGAGCATCCAGAGCGGCGAAGA
AGTGGCCATCAAGATGGAGAGCGCCCACGCCCGCCATCCGCAGCTGTTGT
ACGAGGCCAAGCTGTACCGCATTCTGAGCGGCGGCGTTGGATTCCCTCGT
ATACGTCACCATGGCAAGGAAAAGAACTTCAACACCCTGGTCATGGACCT
GCTGGGACCCTCGCTGGAGGATCTGTTCAATTTCTGTACGCGCCATTTCA
CAATCAAAACGGTTCTGATGCTCGTCGACCAGATGATCGGACGCTTGGAG
TACATCCATCTCAAGTGCTTCATCCATCGCGACATCAAGCCGGATAACTT
CCTAATGGGCATTGGTCGGCACTGCAATAAGCTGTTCCTGATCGATTTCG
GTCTGGCCAAGAAGTTCCGCGATCCGCACACGCGCCATCACATCGTTTAC
CGCGAGGACAAGAACCTCACCGGCACTGCCCGCTATGCCTCGATCAATGC
CCATCTGGGCATCGAGCAGTCGCGGCGTGACGACATGGAATCGCTTGGAT
ACGTGATGATGTACTTCAATCGCGGCGTACTGCCATGGCAAGGCATGAAG
GCCAACACCAAGCAGCAGAAATACGAGAAGATCTCCGAAAAGAAGATGTC
CACGCCCATCGAGGTCCTCTGCAAGGGCTCGCCGGCCGAGTTCTCCATGT
ATCTGAACTATTGTCGTAGCCTGCGCTTCGAGGAGCAGCCAGATTACATG
TACCTACGTCAATTGTTCCGCATACTGTTCAGAACGCTGAACCATCAGTA
TGACTACATCTACGACTGGACAATGCTGAAGCAGAAGACCCATCAGGGTC
AACCCAATCCAGCTATACTCTTGGAGCAATTGGACAAGGACAAGGAGAAG
CAGAACGGCAAGCCCCTGATCGCGGACGCAAGCTTTCTAGACCAT

BO04516.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:17:05
Subject Length Description Subject Range Query Range Score Percent Strand
CkIalpha-RG 1014 CG2028-PG 1..1011 17..1027 5055 100 Plus
CkIalpha-RF 1014 CG2028-PF 1..1011 17..1027 5055 100 Plus
CkIalpha-RD 1014 CG2028-PD 1..1011 17..1027 5055 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:17:06
Subject Length Description Subject Range Query Range Score Percent Strand
CkIalpha-RG 1997 CG2028-RG 202..1212 17..1027 5055 100 Plus
CkIalpha-RF 1997 CG2028-RF 202..1212 17..1027 5055 100 Plus
CkIalpha-RD 2232 CG2028-RD 437..1447 17..1027 5055 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:17:03
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 12655377..12656152 95..870 3880 100 Plus
X 23542271 X 12656333..12656490 870..1027 790 100 Plus
3R 32079331 3R 31057085..31057613 816..288 665 75 Minus
X 23542271 X 12655238..12655317 17..96 400 100 Plus
2L 23513712 2L 17555095..17555188 512..419 230 83 Minus
Blast to na_te.dros performed on 2014-11-27 01:17:04 has no hits.

BO04516.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:40:24 Download gff for BO04516.complete
Subject Subject Range Query Range Percent Splice Strand
CkIalpha-RA 1..1014 17..1031 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:09:36 Download gff for BO04516.complete
Subject Subject Range Query Range Percent Splice Strand
CkIalpha-RA 278..1296 9..1032 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:50:09 Download gff for BO04516.complete
Subject Subject Range Query Range Percent Splice Strand
CkIalpha-RA 338..1348 17..1029 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:40:24 Download gff for BO04516.complete
Subject Subject Range Query Range Percent Splice Strand
CkIalpha-RA 278..1296 9..1032 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:22:33 Download gff for BO04516.complete
Subject Subject Range Query Range Percent Splice Strand
CkIalpha-RD 437..1447 17..1029 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:22:33 Download gff for BO04516.complete
Subject Subject Range Query Range Percent Splice Strand
X 12655238..12655316 17..95 100 -> Plus
X 12655378..12656152 96..870 100 -> Plus
X 12656334..12656490 871..1029 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:50:09 Download gff for BO04516.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 12549271..12549349 17..95 100 -> Plus
arm_X 12549411..12550185 96..870 100 -> Plus
arm_X 12550367..12550523 871..1029 98   Plus

BO04516.pep Sequence

Translation from 16 to 1045

> BO04516.pep
MDKMRILKESRPEIIVGGKYRVIRKIGSGSFGDIYLGMSIQSGEEVAIKM
ESAHARHPQLLYEAKLYRILSGGVGFPRIRHHGKEKNFNTLVMDLLGPSL
EDLFNFCTRHFTIKTVLMLVDQMIGRLEYIHLKCFIHRDIKPDNFLMGIG
RHCNKLFLIDFGLAKKFRDPHTRHHIVYREDKNLTGTARYASINAHLGIE
QSRRDDMESLGYVMMYFNRGVLPWQGMKANTKQQKYEKISEKKMSTPIEV
LCKGSPAEFSMYLNYCRSLRFEEQPDYMYLRQLFRILFRTLNHQYDYIYD
WTMLKQKTHQGQPNPAILLEQLDKDKEKQNGKPLIADASFLDH

BO04516.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:34:51
Subject Length Description Subject Range Query Range Score Percent Strand
CkIalpha-PG 337 CG2028-PG 1..337 1..337 1790 100 Plus
CkIalpha-PF 337 CG2028-PF 1..337 1..337 1790 100 Plus
CkIalpha-PD 337 CG2028-PD 1..337 1..337 1790 100 Plus
CkIalpha-PE 337 CG2028-PE 1..337 1..337 1790 100 Plus
CkIalpha-PA 337 CG2028-PA 1..337 1..337 1790 100 Plus