Clone BO04519 Report

Search the DGRC for BO04519

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:45
Well:19
Vector:pDNR-Dual
Associated Gene/TranscriptStlk-RA
Protein status:BO04519.pep:
Sequenced Size:1072

Clone Sequence Records

BO04519.3prime Sequence

886 bp (743 high quality bases) assembled on 2005-12-01

> BO04519.3prime
ATGGTCTAGAAAGCTTGCAAATTTCCATATTGTATCATTTGGTTGAGGGT
TGTGGCTGCCCCGAGCATCAGAGAATATTTCATGTTCATTTCTTTTGAAC
TTTGACATTTTTTGGCCTAAGTCTTTCAATTGGTCCAAAAGACTGGTATT
CCGACATTGCTTAAGAAACGAGTGTGTCATTAATTTTGATGCTGCCCATC
GAGACAATGGATTTTTATTCAAGCATAGTTCAACAAATTGATGGAAGTTT
TCCGAAAATGATTTGTTTACAATTACATCACGAGCAATTCGTTTATTTGT
GTGCTCCAGGGATAGGGAACCTTGATTTTCCAAAAGGCTGTTTTTATCCA
GTAGCACCTGCAGACTTCCACGCACTTTTTCAATATACATGTATGTTAAT
TCTGTGTCTTTAAAGGGTTGAAACCCGTTTGCCATTTCGCAACAAGTAAT
TCCGATGGAATAAATATCTATTTTTTCAGTGTAACCAGAAAGGTTTTGAT
ATAAAACTTCTGGTGCTGTCCAATACAACTCTTTTTCTATTCCAACCGTT
GATCCAAATATAAACGTTTTTTTTTCTCCTTGACTAATAAAACTTTGACA
GTAACTAAAATTTGATAGAACTGCTTTTCTGGGACTTAAGAGTATGTGCT
TAGCCCTTACTGATCCATGAACATAATGCTCGGAGTGAATATAAGTAAGT
GCTGATAATACATCCTTTAAAATGAGTGCTATTGCAACTTCCGGAAACCC
AGAAGTATACACGTTTTTTAGCAGCACTTCACAATTTCCAAAACACATAA
ACTTGTAAGTCAAATAAACATACTGCTTGTACAAAAAACAACTGACGATA
GTGTTTATATTTCTATGTTGAAGCCGACGAACAGTT

BO04519.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:06:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG40293-PA 1041 Stlk-RA 171..1038 886..19 4340 100 Minus
CG40293-PB 333 Stlk-RB 234..333 749..650 500 100 Minus
CG40293-PB 333 Stlk-RB 171..234 886..823 320 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:07:33
Subject Length Description Subject Range Query Range Score Percent Strand
Stlk-RC 1584 CG40293-RC 228..1095 886..19 4340 100 Minus
Stlk-RA 1878 CG40293-RA 228..1095 886..19 4340 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:07:32
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 4560356..4560791 754..319 2165 99.8 Minus
2R 25286936 2R 4562843..4563081 322..84 1195 100 Minus
2R 25286936 2R 4546918..4547055 886..749 690 100 Minus
2R 25286936 2R 4564434..4564498 83..19 325 100 Minus
Blast to na_te.dros performed on 2015-02-12 10:07:33 has no hits.

BO04519.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:37:47 Download gff for BO04519.3prime
Subject Subject Range Query Range Percent Splice Strand
CG40293-PA 171..1041 15..886 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:53:02 Download gff for BO04519.3prime
Subject Subject Range Query Range Percent Splice Strand
Stlk-RA 228..1099 14..886 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:05:39 Download gff for BO04519.3prime
Subject Subject Range Query Range Percent Splice Strand
Stlk-RA 228..1099 14..886 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:05:39 Download gff for BO04519.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 4564434..4564502 14..83 97   Minus
2R 4546918..4547054 750..886 100 -> Minus
2R 4560361..4560789 321..749 100 -> Minus
2R 4562845..4563081 84..320 100 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:53:02 Download gff for BO04519.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 434423..434559 750..886 100 -> Minus
arm_2R 447866..448294 321..749 100 -> Minus
arm_2R 450350..450586 84..320 100 -> Minus
arm_2R 451939..452007 14..83 97   Minus

BO04519.5prime Sequence

892 bp (801 high quality bases) assembled on 2005-11-29

> BO04519.5prime
GAAGTTATCAGTCGACATGATGTGCAGTAACAATATATCTGACTACAAAC
TGCTAGAAATACTTAAAAATGGCATGATTGGAACGGTTTACAAAGCAGAA
GATATAAACAACAAATGCTTGGCTGTTAAAAAAGTTTCTATGGATCAGCC
AATGGAAAAGCTTACACTATTGTTTAACGAAGTTTTAACTGTTCGTCGGC
TTCAACATAGAAATATAAACACTATCGTCAGTTGTTTTTTGTACAAGCAG
TATGTTTATTTGACTTACAAGTTTATGTGTTTTGGAAATTGTGAAGTGCT
GCTAAAAAACGTGTATACTTCTGGGTTTCCGGAAGTTGCAATAGCACTCA
TTTTAAAGGATGTATTATCAGCACTTACTTATATTCACTCCGAGCATTAT
GTTCATGGATCAGTAAGGGCTAAGCACATACTCTTAAGTCCCAGAAAAGC
AGTTCTATCAAATTTTAGTTACTGTCAAAGTTTTATTAGTCAAGGAGAAA
AAAAAACGTTTATATTTGGATCAACGGTTGGAATAGAAAAAGAGTTGTAT
TGGACAGCACCAGAAGTTTTATATCAAAACCTTTCTGGTTACACTGAAAA
AATAGATATTTATTCCATCGGAATTACTTGTTGCGAAATGGCAAACGGGT
TTCAACCCTTTAAAGACACAGAATTAACATACATGTATATTGAAAAAGTG
CGTGGAAGTCTGCAGGTGCTACTGGATAAAAACAGCCTTTTGGAAAATCA
AGGTTCCCTATCCCTGGAGCACACAAATAAACGAATTGCTCGTGATGTAA
TTGTAAACAAATCATTTTCGGAAAACTTCCATCAATTTGTTGAACTATGC
TTGAATAAAATCCCTTGTCTCGATGGGCAACATCAAAATTAA

BO04519.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:06:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG40293-PA 1041 Stlk-RA 1..844 17..860 4220 100 Plus
CG40293-PB 333 Stlk-RB 1..234 17..250 1170 100 Plus
CG40293-PB 333 Stlk-RB 234..333 324..423 500 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:29:44
Subject Length Description Subject Range Query Range Score Percent Strand
Stlk-RC 1584 CG40293-RC 58..934 17..892 4330 99.7 Plus
Stlk-RA 1878 CG40293-RA 58..934 17..892 4330 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:29:34
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 4560356..4560791 319..754 2165 99.8 Plus
2R 25286936 2R 4546748..4547055 17..324 1540 100 Plus
2R 25286936 2R 4562843..4562985 751..892 635 97.9 Plus
Blast to na_te.dros performed on 2015-02-10 17:29:39 has no hits.

BO04519.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:37:48 Download gff for BO04519.5prime
Subject Subject Range Query Range Percent Splice Strand
CG40293-PA 1..875 17..890 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 02:41:58 Download gff for BO04519.5prime
Subject Subject Range Query Range Percent Splice Strand
Stlk-RA 58..934 17..892 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:46:10 Download gff for BO04519.5prime
Subject Subject Range Query Range Percent Splice Strand
Stlk-RA 58..934 17..892 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:46:10 Download gff for BO04519.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 4546748..4547054 17..323 100 -> Plus
2R 4560361..4560789 324..752 100 -> Plus
2R 4562845..4562985 753..892 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 02:41:58 Download gff for BO04519.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 434253..434559 17..323 100 -> Plus
arm_2R 447866..448294 324..752 100 -> Plus
arm_2R 450350..450490 753..892 97   Plus

BO04519.complete Sequence

1072 bp (1072 high quality bases) assembled on 2005-09-08

GenBank Submission: FJ629789

> BO04519.complete
GAAGTTATCAGTCGACATGATGTGCAGTAACAATATATCTGACTACAAAC
TGCTAGAAATACTTAAAAATGGCATGATTGGAACGGTTTACAAAGCAGAA
GATATAAACAACAAATGCTTGGCTGTTAAAAAAGTTTCTATGGATCAGCC
AATGGAAAAGCTTACACTATTGTTTAACGAAGTTTTAACTGTTCGTCGGC
TTCAACATAGAAATATAAACACTATCGTCAGTTGTTTTTTGTACAAGCAG
TATGTTTATTTGACTTACAAGTTTATGTGTTTTGGAAATTGTGAAGTGCT
GCTAAAAAACGTGTATACTTCTGGGTTTCCGGAAGTTGCAATAGCACTCA
TTTTAAAGGATGTATTATCAGCACTTACTTATATTCACTCCGAGCATTAT
GTTCATGGATCAGTAAGGGCTAAGCACATACTCTTAAGTCCCAGAAAAGC
AGTTCTATCAAATTTTAGTTACTGTCAAAGTTTTATTAGTCAAGGAGAAA
AAAAAACGTTTATATTTGGATCAACGGTTGGAATAGAAAAAGAGTTGTAT
TGGACAGCACCAGAAGTTTTATATCAAAACCTTTCTGGTTACACTGAAAA
AATAGATATTTATTCCATCGGAATTACTTGTTGCGAAATGGCAAACGGGT
TTCAACCCTTTAAAGACACAGAATTAACATACATGTATATTGAAAAAGTG
CGTGGAAGTCTGCAGGTGCTACTGGATAAAAACAGCCTTTTGGAAAATCA
AGGTTCCCTATCCCTGGAGCACACAAATAAACGAATTGCTCGTGATGTAA
TTGTAAACAAATCATTTTCGGAAAACTTCCATCAATTTGTTGAACTATGC
TTGAATAAAAATCCATTGTCTCGATGGGCAGCATCAAAATTAATGACACA
CTCGTTTCTTAAGCAATGTCGGAATACCAGTCTTTTGGACCAATTGAAAG
ACTTAGGCCAAAAAATGTCAAAGTTCAAAAGAAATGAACATGAAATATTC
TCTGATGCTCGGGGCAGCCACAACCCTCAACCAAATGATACAATATGGAA
ATTTGCAAGCTTTCTAGACCAT

BO04519.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:35:56
Subject Length Description Subject Range Query Range Score Percent Strand
Stlk-RC 1041 CG40293-PC 1..1038 17..1054 5190 100 Plus
Stlk-RA 1041 CG40293-PA 1..1038 17..1054 5190 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:35:57
Subject Length Description Subject Range Query Range Score Percent Strand
Stlk-RC 1584 CG40293-RC 58..1095 17..1054 5190 100 Plus
Stlk-RA 1878 CG40293-RA 58..1095 17..1054 5190 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:35:54
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 4560356..4560791 319..754 2165 99.8 Plus
2R 25286936 2R 4546748..4547055 17..324 1540 100 Plus
2R 25286936 2R 4562843..4563081 751..989 1195 100 Plus
2R 25286936 2R 4564434..4564498 990..1054 325 100 Plus
Blast to na_te.dros performed on 2014-11-28 08:35:55 has no hits.

BO04519.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:40:25 Download gff for BO04519.complete
Subject Subject Range Query Range Percent Splice Strand
Stlk-RA 1..1041 17..1058 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:59:15 Download gff for BO04519.complete
Subject Subject Range Query Range Percent Splice Strand
Stlk-RA 29..1066 17..1056 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:23:36 Download gff for BO04519.complete
Subject Subject Range Query Range Percent Splice Strand
Stlk-RA 58..1095 17..1056 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:40:26 Download gff for BO04519.complete
Subject Subject Range Query Range Percent Splice Strand
Stlk-RA 29..1070 17..1059 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:21:17 Download gff for BO04519.complete
Subject Subject Range Query Range Percent Splice Strand
Stlk-RA 58..1095 17..1056 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:21:17 Download gff for BO04519.complete
Subject Subject Range Query Range Percent Splice Strand
2R 4546748..4547054 17..323 100 -> Plus
2R 4560361..4560789 324..752 100 -> Plus
2R 4562845..4563081 753..989 100 -> Plus
2R 4564434..4564498 990..1056 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:23:36 Download gff for BO04519.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 450350..450586 753..989 100 -> Plus
arm_2R 451939..452003 990..1056 97   Plus
arm_2R 434253..434559 17..323 100 -> Plus
arm_2R 447866..448294 324..752 100 -> Plus

BO04519.pep Sequence

Translation from 16 to 1072

> BO04519.pep
MMCSNNISDYKLLEILKNGMIGTVYKAEDINNKCLAVKKVSMDQPMEKLT
LLFNEVLTVRRLQHRNINTIVSCFLYKQYVYLTYKFMCFGNCEVLLKNVY
TSGFPEVAIALILKDVLSALTYIHSEHYVHGSVRAKHILLSPRKAVLSNF
SYCQSFISQGEKKTFIFGSTVGIEKELYWTAPEVLYQNLSGYTEKIDIYS
IGITCCEMANGFQPFKDTELTYMYIEKVRGSLQVLLDKNSLLENQGSLSL
EHTNKRIARDVIVNKSFSENFHQFVELCLNKNPLSRWAASKLMTHSFLKQ
CRNTSLLDQLKDLGQKMSKFKRNEHEIFSDARGSHNPQPNDTIWKFASFL
DH

BO04519.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:17:51
Subject Length Description Subject Range Query Range Score Percent Strand
Stlk-PC 346 CG40293-PC 1..346 1..346 1810 100 Plus
Stlk-PA 346 CG40293-PA 1..346 1..346 1810 100 Plus
GckIII-PA 642 CG5169-PA 17..295 14..330 271 26.6 Plus
fray-PG 552 CG7693-PG 33..323 5..309 249 26.4 Plus
Tao-PI 1038 CG14217-PI 30..291 13..310 249 28.1 Plus