Clone BO04524 Report

Search the DGRC for BO04524

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:45
Well:24
Vector:pDNR-Dual
Associated Gene/TranscriptZyx102EF-RA
Protein status:BO04524.pep: full length peptide match
Sequenced Size:1726

Clone Sequence Records

BO04524.3prime Sequence

938 bp (840 high quality bases) assembled on 2005-12-01

> BO04524.3prime
ATGGTCTAGAAAGCTTGCATGTTCTGACGTCATGCGGTTTGTTAAAGCCT
GAACCCTTTTTGCATTGCAGCTTTTACATAGAACATGGTCATCCAGGGGA
TAACATCCGCGGCCCTCAGCTTCAGATGATAGTAAGAGCCCACAGTCCTC
ACACTTATAACATTCTAGATGAAAACTTCGATCTAGGGCCACTACTCTGA
TCGTTTCTTCTTGTCCTGGATCTGGCATAATTGGTTGCTTGCAGACACAA
CAGCGAGGGGCAAATTTTTTATGAAAATCTGTTATGCAATAGTTTTGATT
AGTAGCATCAACTGTAAATAATAGCCCATCTAAGCTTTTTCCGCATACAA
CACATGTAAAACATTGCGGATGATATGGTTTTCCAGTAGCTCTAAGAATT
CTCTCTAAAATTGGTTCCATGCAAACAGAGCATTTTTCCAGTGTTTGTAA
ATAATCATATTCGCAATAGGGTTTGCCGTCTAATGCATAGAAAGGTTTTC
CCTGTAAGTTAATTTGGCAATCTGTACATGTGAAGCAAAATATGTGGTAT
ATTTGATCCATTGCTGTACATCCACTACTTTCTCCAAGTACACGTGAATT
GCATTTGACACACCTACCGTAGTTTTCCAATTCTTGAACCGGTTCGGTGG
GTATTGAAATGTAATTTTTTAGACCTTCCTTATCATTTCTATGGATGCTG
TTCACGTCATAAAATGTAGTTCTAGCATTACCATGTATGTATAGTGTTTG
GTTAGCTTCAATCGAATTCGAAATATTGTATTCATGGGAAATGTTTGGAT
TATTATCATTAACGTATGAATTATGCAGATTATAACTTTCACGAGGCAGC
GTATCTGCAACACAGGGTCGAGGGTTTATAGGTTCATATATTGAATCATA
TGTAGAAGAGCTCTTGCCTGTGGCATCATGCTGCATCG

BO04524.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:06:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG32018-PA 1695 Zyx102EF-RA 773..1692 938..19 4600 100 Minus
CG32018-PB 1758 Zyx102EF-RB 836..1755 938..19 4600 100 Minus
CG32018-PE 1758 Zyx102EF-RE 836..1755 938..19 4600 100 Minus
CG32018-PF 1695 Zyx102EF-RF 773..1692 938..19 4600 100 Minus
CG32018-PG 1572 Zyx102EF-RG 650..1569 938..19 4600 100 Minus
CG32018-PD 1695 Zyx102EF-RD 773..1692 938..19 4600 100 Minus
CG32018-PC 1758 Zyx102EF-RC 836..1755 938..19 4600 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:45:47
Subject Length Description Subject Range Query Range Score Percent Strand
Zyx-RL 2180 CG32018-RL 1182..2101 938..19 4600 100 Minus
Zyx-RH 1958 CG32018-RH 960..1879 938..19 4600 100 Minus
Zyx-RG 1788 CG32018-RG 790..1709 938..19 4600 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:45:42
Subject Length Description Subject Range Query Range Score Percent Strand
4 1348131 4 1057807..1058156 269..618 1750 100 Plus
4 1348131 4 1058207..1058506 615..914 1500 100 Plus
4 1348131 4 1057444..1057574 19..149 655 100 Plus
4 1348131 4 1057632..1057760 147..275 615 98.4 Plus
Blast to na_te.dros performed on 2015-02-11 04:45:45 has no hits.

BO04524.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:05:00 Download gff for BO04524.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32018-PA 773..1695 15..938 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:18:55 Download gff for BO04524.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32018-PC 836..1758 15..938 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:13:08 Download gff for BO04524.3prime
Subject Subject Range Query Range Percent Splice Strand
Zyx-RB 1063..1988 11..938 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:26:55 Download gff for BO04524.3prime
Subject Subject Range Query Range Percent Splice Strand
Zyx-RG 790..1715 11..938 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 09:26:55 Download gff for BO04524.3prime
Subject Subject Range Query Range Percent Splice Strand
4 1057438..1057572 11..147 97 <- Plus
4 1057633..1057753 148..268 100 <- Plus
4 1057807..1058155 269..617 100 <- Plus
4 1058210..1058504 618..912 100 <- Plus
4 1059101..1059126 913..938 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:13:08 Download gff for BO04524.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_4 1078064..1078198 11..147 97 <- Plus
arm_4 1078259..1078379 148..268 100 <- Plus
arm_4 1078433..1078781 269..617 100 <- Plus
arm_4 1078836..1079130 618..912 100 <- Plus
arm_4 1079727..1079752 913..938 100   Plus

BO04524.5prime Sequence

908 bp (848 high quality bases) assembled on 2005-11-29

> BO04524.5prime
GAAGTTATCAGTCGACATGGAGTCTGTGGCCCAGCAACTTAGAGAGCTGT
CGCTTCCAAAAGGTGACACAGGCTCACCGCTTGTATGTATTGGACATGGA
AAAGTTGCGAAGCTAGTCGCCAAGATAAGTAATAATCAAAATGCATCAGT
AAAGAGGAGATTGGATATACCTCCTAAGCCGCCGATAAAATATAATGAAA
TGCCTCAGGTTCCATCAAGCAGACAGGTTTTGTGTTCGCGGGAACCACTA
TATTCACAACCTCTGATTGGAGTCGAGAAAACAATGAGGGGGCATATGCC
TTTTAGAAAATACCTCAGCTCTGAATTCGGAGTTGCTGATACTCAAATAA
ACAGAAAAACAACTTTAGATAATCCGGCAATTTTGGAACAGCAATTAGAA
GCTCTTGCTTACCATAAACTTCAAATGGAAAAAAAGGGTCTTTTGGGAGT
ACAAGCTAAGCCAACACAACCTCTCAACAGCTTTACAAAGCCCCTTTCAA
AGACTTTAAGCAAAAGCTTAATATATTCTAATTTAGGTTCTGTTCGCAAA
GAAATAGAAACATTAGAACTATTAACAGACGAAACTAAGATTTCTGCGAG
TACATATTCAAACGTTAATGAAACTGACAACGAAAAAGATGAGTTACCGC
CACCACCTAGTCCAGAGAGCGCTGTGAGTTCTTCATACAGTGAGCTTCGT
CACGCCACTTTGGAATTCAACAAACCAATTGATTATTTACAAAATAACCA
GACAACGAATCCTTTACAAATATATGCAAACCAATATGCGATGCAGCATG
ATGCCACAGGCAAGAGCTCTTCTACATATGATTCAATATATGAACCTATA
AACCCTCGACCCTGTGTTGCAGATACGCTGCCTCGTGAAAAGTATAATCT
GCATAAAT

BO04524.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:06:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG32018-PA 1695 Zyx102EF-RA 1..890 17..906 4400 99.7 Plus
CG32018-PF 1695 Zyx102EF-RF 1..890 17..906 4400 99.7 Plus
CG32018-PD 1695 Zyx102EF-RD 1..890 17..906 4400 99.7 Plus
CG32018-PB 1758 Zyx102EF-RB 1..610 17..626 3050 100 Plus
CG32018-PE 1758 Zyx102EF-RE 1..610 17..626 3050 100 Plus
CG32018-PC 1758 Zyx102EF-RC 1..610 17..626 3050 100 Plus
CG32018-PG 1572 Zyx102EF-RG 4..424 206..626 2105 100 Plus
CG32018-PB 1758 Zyx102EF-RB 673..953 626..906 1355 99.2 Plus
CG32018-PE 1758 Zyx102EF-RE 673..953 626..906 1355 99.2 Plus
CG32018-PC 1758 Zyx102EF-RC 673..953 626..906 1355 99.2 Plus
CG32018-PG 1572 Zyx102EF-RG 487..767 626..906 1355 99.2 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 16:06:49
Subject Length Description Subject Range Query Range Score Percent Strand
Zyx-RA 1979 CG32018-RA 209..1098 17..906 4420 99.8 Plus
Zyx-RL 2180 CG32018-RL 347..956 17..626 3050 100 Plus
Zyx-RB 2061 CG32018-RB 228..837 17..626 3050 100 Plus
Zyx-RL 2180 CG32018-RL 1019..1299 626..906 1375 99.3 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 16:06:48
Subject Length Description Subject Range Query Range Score Percent Strand
4 1348131 4 1059419..1059840 626..205 2110 100 Minus
4 1348131 4 1060411..1060604 210..17 970 100 Minus
4 1348131 4 1059101..1059289 814..626 945 100 Minus
4 1348131 4 1058413..1058506 906..813 440 97.9 Minus
Blast to na_te.dros performed on 2015-02-12 16:06:49 has no hits.

BO04524.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:05:01 Download gff for BO04524.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32018-PF 1..891 17..908 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:18:57 Download gff for BO04524.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32018-PF 1..891 17..908 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:29:23 Download gff for BO04524.5prime
Subject Subject Range Query Range Percent Splice Strand
Zyx-RA 206..1099 12..908 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:42:03 Download gff for BO04524.5prime
Subject Subject Range Query Range Percent Splice Strand
Zyx-RA 206..1099 12..908 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:42:03 Download gff for BO04524.5prime
Subject Subject Range Query Range Percent Splice Strand
4 1058411..1058504 815..908 96 <- Minus
4 1059101..1059288 627..814 100 <- Minus
4 1059419..1059836 209..626 100 <- Minus
4 1060413..1060607 12..208 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:29:23 Download gff for BO04524.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_4 1079037..1079130 815..908 96 <- Minus
arm_4 1079727..1079914 627..814 100 <- Minus
arm_4 1080045..1080462 209..626 100 <- Minus
arm_4 1081039..1081233 12..208 98   Minus

BO04524.complete Sequence

1726 bp (1726 high quality bases) assembled on 2005-09-08

GenBank Submission: FJ629790

> BO04524.complete
GAAGTTATCAGTCGACATGGAGTCTGTGGCCCAGCAACTTAGAGAGCTGT
CGCTTCCAAAAGGTGACACAGGCTCACCGCTTGTATGTATTGGACATGGA
AAAGTTGCGAAGCTAGTCGCCAAGATAAGTAATAATCAAAATGCATCAGT
AAAGAGGAGATTGGATATACCTCCTAAGCCGCCGATAAAATATAATGAAA
TGCCTCAGGTTCCATCAAGCAGACAGGTTTTGTGTTCGCGGGAACCACTA
TATTCACAACCTCTGATTGGAGTCGAGAAAACAATGAGGGGGCATATGCC
TTTTAGAAAATACCTCAGCTCTGAATTCGGAGTTGCTGATACTCAAATAA
ACAGAAAAACAACTTTAGATAATCCGGCAATTTTGGAACAGCAATTAGAA
GCTCTTGCTTACCATAAACTTCAAATGGAAAAAAAGGGTCTTTTGGGAGT
ACAAGCTAAGCCAACACAACCTCTCAACAGCTTTACAAAGCCCCTTTCAA
AGACTTTAAGCAAAAGCTTAATATATTCTAATTTAGGTTCTGTTCGCAAA
GAAATAGAAACATTAGAACTATTAACAGACGAAACTAAGATTTCTGCGAG
TACATATTCAAACGTTAATGAAACTGACAACGAAAAAGATGAGTTACCGC
CACCACCTAGTCCAGAGAGCGCTGTGAGTTCTTCATACAGTGAGCTTCGT
CACGCCACTTTGGAATTCAACAAACCAATTGATTATTTACAAAATAACCA
GACAACGAATCCTTTACAAATATATGCAAACCAATATGCGATGCAGCATG
ATGCCACAGGCAAGAGCTCTTCTACATATGATTCAATATATGAACCTATA
AACCCTCGACCCTGTGTTGCAGATACGCTGCCTCGTGAAAGTTATAATCT
GCATAATTCATACGTTAATGATAATAATCCAAACATTTCCCATGAATACA
ATATTTCGAATTCGATTGAAGCTAACCAAACACTATACATACATGGTAAT
GCTAGAACTACATTTTATGACGTGAACAGCATCCATAGAAATGATAAGGA
AGGTCTAAAAAATTACATTTCAATACCCACCGAACCGGTTCAAGAATTGG
AAAACTACGGTAGGTGTGTCAAATGCAATTCACGTGTACTTGGAGAAAGT
AGTGGATGTACAGCAATGGATCAAATATACCACATATTTTGCTTCACATG
TACAGATTGCCAAATTAACTTACAGGGAAAACCTTTCTATGCATTAGACG
GCAAACCCTATTGCGAATATGATTATTTACAAACACTGGAAAAATGCTCT
GTTTGCATGGAACCAATTTTAGAGAGAATTCTTAGAGCTACTGGAAAACC
ATATCATCCGCAATGTTTTACATGTGTTGTATGCGGAAAAAGCTTAGATG
GGCTATTATTTACAGTTGATGCTACTAATCAAAACTATTGCATAACAGAT
TTTCATAAAAAATTTGCCCCTCGCTGTTGTGTCTGCAAGCAACCAATTAT
GCCAGATCCAGGACAAGAAGAAACGATCAGAGTAGTGGCCCTAGATCGAA
GTTTTCATCTAGAATGTTATAAGTGTGAGGACTGTGGGCTCTTACTATCA
TCTGAAGCTGAGGGCCGCGGATGTTATCCCCTGGATGACCATGTTCTATG
TAAAAGCTGCAATGCAAAAAGGGTTCAGGCTTTAACAAACCGCATGACGT
CAGAACATGCAAGCTTTCTAGACCAT

BO04524.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:51:51
Subject Length Description Subject Range Query Range Score Percent Strand
Zyx-RA 1695 CG32018-PA 1..1692 17..1708 8460 100 Plus
Zyx-RL 1758 CG32018-PL 673..1755 626..1708 5415 100 Plus
Zyx-RH 1491 CG32018-PH 406..1488 626..1708 5415 100 Plus
Zyx-RL 1758 CG32018-PL 1..610 17..626 3050 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:51:52
Subject Length Description Subject Range Query Range Score Percent Strand
Zyx-RA 1979 CG32018-RA 209..1900 17..1708 8460 100 Plus
Zyx-RL 2180 CG32018-RL 1019..2101 626..1708 5415 100 Plus
Zyx-RH 1958 CG32018-RH 797..1879 626..1708 5415 100 Plus
Zyx-RL 2180 CG32018-RL 347..956 17..626 3050 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:51:48
Subject Length Description Subject Range Query Range Score Percent Strand
4 1348131 4 1059419..1059840 626..205 2110 100 Minus
4 1348131 4 1057807..1058156 1458..1109 1750 100 Minus
4 1348131 4 1058207..1058506 1112..813 1500 100 Minus
4 1348131 4 1060411..1060604 210..17 970 100 Minus
4 1348131 4 1059101..1059289 814..626 945 100 Minus
4 1348131 4 1057444..1057574 1708..1578 655 100 Minus
4 1348131 4 1057632..1057760 1580..1452 615 98.4 Minus
Blast to na_te.dros performed on 2014-11-28 00:51:49 has no hits.

BO04524.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:43:01 Download gff for BO04524.complete
Subject Subject Range Query Range Percent Splice Strand
Zyx102EF-RC 1..609 17..625 100 -> Plus
Zyx102EF-RC 674..1758 626..1712 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:13:01 Download gff for BO04524.complete
Subject Subject Range Query Range Percent Splice Strand
Zyx102EF-RC 74..685 12..625 99 -> Plus
Zyx102EF-RC 750..1837 626..1716 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:33:01 Download gff for BO04524.complete
Subject Subject Range Query Range Percent Splice Strand
Zyx-RA 209..1900 17..1710 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:43:01 Download gff for BO04524.complete
Subject Subject Range Query Range Percent Splice Strand
Zyx102EF-RC 74..685 12..625 99 -> Plus
Zyx102EF-RC 750..1837 626..1716 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:39:25 Download gff for BO04524.complete
Subject Subject Range Query Range Percent Splice Strand
Zyx-RA 209..1900 17..1710 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:39:25 Download gff for BO04524.complete
Subject Subject Range Query Range Percent Splice Strand
4 1057442..1057572 1580..1710 98 <- Minus
4 1057633..1057753 1459..1579 100 <- Minus
4 1057807..1058155 1110..1458 100 <- Minus
4 1058210..1058504 815..1109 100 <- Minus
4 1059101..1059288 627..814 100 <- Minus
4 1059419..1059836 209..626 100 <- Minus
4 1060413..1060604 17..208 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:33:01 Download gff for BO04524.complete
Subject Subject Range Query Range Percent Splice Strand
arm_4 1080045..1080462 209..626 100 <- Minus
arm_4 1078068..1078198 1580..1710 98 <- Minus
arm_4 1078259..1078379 1459..1579 100 <- Minus
arm_4 1078433..1078781 1110..1458 100 <- Minus
arm_4 1078836..1079130 815..1109 100 <- Minus
arm_4 1079727..1079914 627..814 100 <- Minus
arm_4 1081039..1081230 17..208 100   Minus

BO04524.pep Sequence

Translation from 16 to 1726

> BO04524.pep
MESVAQQLRELSLPKGDTGSPLVCIGHGKVAKLVAKISNNQNASVKRRLD
IPPKPPIKYNEMPQVPSSRQVLCSREPLYSQPLIGVEKTMRGHMPFRKYL
SSEFGVADTQINRKTTLDNPAILEQQLEALAYHKLQMEKKGLLGVQAKPT
QPLNSFTKPLSKTLSKSLIYSNLGSVRKEIETLELLTDETKISASTYSNV
NETDNEKDELPPPPSPESAVSSSYSELRHATLEFNKPIDYLQNNQTTNPL
QIYANQYAMQHDATGKSSSTYDSIYEPINPRPCVADTLPRESYNLHNSYV
NDNNPNISHEYNISNSIEANQTLYIHGNARTTFYDVNSIHRNDKEGLKNY
ISIPTEPVQELENYGRCVKCNSRVLGESSGCTAMDQIYHIFCFTCTDCQI
NLQGKPFYALDGKPYCEYDYLQTLEKCSVCMEPILERILRATGKPYHPQC
FTCVVCGKSLDGLLFTVDATNQNYCITDFHKKFAPRCCVCKQPIMPDPGQ
EETIRVVALDRSFHLECYKCEDCGLLLSSEAEGRGCYPLDDHVLCKSCNA
KRVQALTNRMTSEHASFLDH

BO04524.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:53:57
Subject Length Description Subject Range Query Range Score Percent Strand
Zyx-PA 564 CG32018-PA 1..564 1..564 3016 100 Plus
Zyx-PL 585 CG32018-PL 1..585 1..564 2984 96.4 Plus
Zyx-PB 585 CG32018-PB 1..585 1..564 2984 96.4 Plus
Zyx-PG 523 CG32018-PG 2..523 64..564 2660 96 Plus
Zyx-PH 496 CG32018-PH 1..496 90..564 2528 95.8 Plus