Clone Sequence Records
BO04526.3prime Sequence
949 bp (839 high quality bases) assembled on 2005-12-01
> BO04526.3prime
ATGGTCTAGAAAGCTTGCGGACACTCCCAGGTCGTGCAACAGATGCTGGG
TAATCACCTCACCCTGCTCCTCCATCAGCTGAGCGGTCACCGTGTTGATC
AGGTTGAAAACGATGGCGAAGACGGTGAAGGCACAGTAGACGCCCAACGC
TAGCCACCAGATGAGCTGCTCGTACTCTCGGTGACCGAAGTTCTTTAGCA
CCAGAAAGCCGATCGTTAGTCCTGCCAGGGCTCCCGTCAGGTGGGCAATG
TACGACACCTGGGGACCCTTGGCGAAGGCGCTTCCATCGAAGTATTGGGT
GTAGAGAGCATAGCCCAGATCGCAGGAGACAAAGATGACAACGGATCCGA
GTTGCGTGGATGCGCTCTTCATGTGCGCATAGTTCAGTGTAATGTTGGCC
AGATGTGCGGCCAACAGGGCATAGACGCCACCGCTGGCGCCCACCAGGAA
GACCTCCGAGTCGACGACACTGGTGCCCAGGGATCCGGCAAAAACGCCCG
CCATGTAGATCACGCCGATCCTGGCCGTGCCGTGCATCACCTCCAGGGGA
ATGCCAAAAAACAGCTGGATGACGATATTGAAGCCCAGGTGGAACCAGTT
GGCGTGCAGGAACATGTAGCTAAAGAAGCGCCACACCTGCAGACGCCGGT
CCGGCCGATAGACCAGCACCGAATCCGACGGAATCGGAACGGGTAGCCCG
AAATTCTGGGCGGGCATTGTGTAGCGGTCGTAGGCGAAGATGGCAATCTC
AATGATGGAGATCACTAGGATGAACCAGGGCCAGTGCTGGCGGTGGACGT
ACTTCAGCAGGCCGATATCCTCCGACTCCGGAAGTGGCGTGGCCGGGATG
GCCTCGCGTTGCATGTAGATGTGCTCGCCTTGGCGGGTGCAGCAGGTGCT
GCTCGCCGTGCTGCAATCGGTGTCGTACGACGAGGAGTTGGAGGAACTG
BO04526.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:07:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1004-PA | 1068 | rho-RA | 135..1065 | 949..19 | 4655 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:31:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
rho-RB | 3000 | CG1004-RB | 476..1406 | 949..19 | 4655 | 100 | Minus |
rho-RA | 2531 | CG1004-RA | 476..1406 | 949..19 | 4655 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:31:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 1466488..1466907 | 749..330 | 2100 | 100 | Minus |
3L | 28110227 | 3L | 1467039..1467350 | 330..19 | 1560 | 100 | Minus |
3L | 28110227 | 3L | 1465621..1465822 | 949..748 | 1010 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 17:31:48 has no hits.
BO04526.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:05:04 Download gff for
BO04526.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
rho-PA | 135..1068 | 15..949 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:19:01 Download gff for
BO04526.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1004-PA | 135..1068 | 15..949 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 02:42:05 Download gff for
BO04526.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
rho-RA | 476..1416 | 6..949 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:47:34 Download gff for
BO04526.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
rho-RA | 476..1416 | 6..949 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:47:34 Download gff for
BO04526.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 1465621..1465822 | 748..949 | 100 | -> | Minus |
3L | 1466490..1466907 | 330..747 | 100 | -> | Minus |
3L | 1467040..1467360 | 6..329 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 02:42:05 Download gff for
BO04526.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 1465621..1465822 | 748..949 | 100 | -> | Minus |
arm_3L | 1466490..1466907 | 330..747 | 100 | -> | Minus |
arm_3L | 1467040..1467360 | 6..329 | 98 | | Minus |
BO04526.5prime Sequence
892 bp (781 high quality bases) assembled on 2005-12-01
> BO04526.5prime
GAAGTTATCAGTCGACATGGAGAACTTAACGCAGAATGTAAACGAAACCA
AGGTGGATTTGGGCCAGGAGAAGGAGAAGGAGGCGTCGCAGGAGGAGGAG
CATGCCACCGCCGCCAAGGAGACCATCATTGACATTCCCGCCGCGTGCTC
CAGTTCCTCCAACTCCTCGTCGTACGACACCGATTGCAGCACGGCGAGCA
GCACCTGCTGCACCCGCCAAGGCGAGCACATCTACATGCAACGCGAGGCC
ATCCCGGCCACGCCACTTCCGGAGTCGGAGGATATCGGCCTGCTGAAGTA
CGTCCACCGCCAGCACTGGCCCTGGTTCATCCTAGTGATCTCCATCATTG
AGATTGCCATCTTCGCCTACGACCGCTACACAATGCCCGCCCAGAATTTC
GGGCTACCCGTTCCGATTCCGTCGGATTCGGTGCTGGTCTATCGGCCGGA
CCGGCGTCTGCAGGTGTGGCGCTTCTTTAGCTACATGTTCCTGCACGCCA
ACTGGTTCCACCTGGGCTTCAATATCGTCATCCAGCTGTTTTTTGGCATT
CCCCTGGAGGTGATGCACGGCACGGCCAGGATCGGCGTGATCTACATGGC
GGGCGTTTTTGCCGGATCCCTGGGCACCAGTGTCGTCGACTCGGAGGTCT
TCCTGGTGGGCGCCAGCGGTGGCGTCTATGCCCTGTTGGCCGCACATCTG
GCCAACATTACACTGAACTATGCGCACATGAAGAGCGCATCCACGCAACT
CGGATCCGTTGTCATCTTTGTCTCCTGCGATCTGGGCTATGCTCTCTACA
CCCAATACTTCGATGGAAGCGCCTTCGGCCAGGGTCCCCAGGTGTCGTAC
ATTGCCCACCTGACGGGAGCCCTGGCAGGACTAACGATCGGC
BO04526.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:07:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1004-PA | 1068 | rho-RA | 1..876 | 17..892 | 4330 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 05:35:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
rho-RB | 3000 | CG1004-RB | 341..1217 | 16..892 | 4355 | 99.8 | Plus |
rho-RA | 2531 | CG1004-RA | 341..1217 | 16..892 | 4355 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 05:35:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 1466488..1466907 | 351..770 | 2100 | 100 | Plus |
3L | 28110227 | 3L | 1465486..1465822 | 16..352 | 1685 | 100 | Plus |
3L | 28110227 | 3L | 1467039..1467161 | 770..892 | 585 | 98.4 | Plus |
Blast to na_te.dros performed on 2015-02-13 05:35:52 has no hits.
BO04526.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:05:05 Download gff for
BO04526.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
rho-PA | 1..876 | 17..892 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:19:02 Download gff for
BO04526.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1004-PA | 1..876 | 17..892 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 17:54:18 Download gff for
BO04526.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
rho-RA | 341..1217 | 16..892 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:49:49 Download gff for
BO04526.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
rho-RA | 341..1217 | 16..892 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 07:49:49 Download gff for
BO04526.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 1465486..1465822 | 16..352 | 100 | -> | Plus |
3L | 1466490..1466907 | 353..770 | 100 | -> | Plus |
3L | 1467040..1467161 | 771..892 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 17:54:18 Download gff for
BO04526.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 1465486..1465822 | 16..352 | 100 | -> | Plus |
arm_3L | 1466490..1466907 | 353..770 | 100 | -> | Plus |
arm_3L | 1467040..1467161 | 771..892 | 98 | | Plus |
BO04526.complete Sequence
1099 bp (1099 high quality bases) assembled on 2005-09-08
GenBank Submission: FJ629791
> BO04526.complete
GAAGTTATCAGTCGACATGGAGAACTTAACGCAGAATGTAAACGAAACCA
AGGTGGATTTGGGCCAGGAGAAGGAGAAGGAGGCGTCGCAGGAGGAGGAG
CATGCCACCGCCGCCAAGGAGACCATCATTGACATTCCCGCCGCGTGCTC
CAGTTCCTCCAACTCCTCGTCGTACGACACCGATTGCAGCACGGCGAGCA
GCACCTGCTGCACCCGCCAAGGCGAGCACATCTACATGCAACGCGAGGCC
ATCCCGGCCACGCCACTTCCGGAGTCGGAGGATATCGGCCTGCTGAAGTA
CGTCCACCGCCAGCACTGGCCCTGGTTCATCCTAGTGATCTCCATCATTG
AGATTGCCATCTTCGCCTACGACCGCTACACAATGCCCGCCCAGAATTTC
GGGCTACCCGTTCCGATTCCGTCGGATTCGGTGCTGGTCTATCGGCCGGA
CCGGCGTCTGCAGGTGTGGCGCTTCTTTAGCTACATGTTCCTGCACGCCA
ACTGGTTCCACCTGGGCTTCAATATCGTCATCCAGCTGTTTTTTGGCATT
CCCCTGGAGGTGATGCACGGCACGGCCAGGATCGGCGTGATCTACATGGC
GGGCGTTTTTGCCGGATCCCTGGGCACCAGTGTCGTCGACTCGGAGGTCT
TCCTGGTGGGCGCCAGCGGTGGCGTCTATGCCCTGTTGGCCGCACATCTG
GCCAACATTACACTGAACTATGCGCACATGAAGAGCGCATCCACGCAACT
CGGATCCGTTGTCATCTTTGTCTCCTGCGATCTGGGCTATGCTCTCTACA
CCCAATACTTCGATGGAAGCGCCTTCGCCAAGGGTCCCCAGGTGTCGTAC
ATTGCCCACCTGACGGGAGCCCTGGCAGGACTAACGATCGGCTTTCTGGT
GCTAAAGAACTTCGGTCACCGAGAGTACGAGCAGCTCATCTGGTGGCTAG
CGTTGGGCGTCTACTGTGCCTTCACCGTCTTCGCCATCGTTTTCAACCTG
ATCAACACGGTGACCGCTCAGCTGATGGAGGAGCAGGGTGAGGTGATTAC
CCAGCATCTGTTGCACGACCTGGGAGTGTCCGCAAGCTTTCTAGACCAT
BO04526.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:24:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
rho-RB | 1068 | CG1004-PB | 1..1065 | 17..1081 | 5325 | 100 | Plus |
rho-RA | 1068 | CG1004-PA | 1..1065 | 17..1081 | 5325 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:24:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
rho-RB | 3000 | CG1004-RB | 341..1406 | 16..1081 | 5330 | 100 | Plus |
rho-RA | 2531 | CG1004-RA | 341..1406 | 16..1081 | 5330 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:24:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 1466488..1466907 | 351..770 | 2100 | 100 | Plus |
3L | 28110227 | 3L | 1465486..1465822 | 16..352 | 1685 | 100 | Plus |
3L | 28110227 | 3L | 1467039..1467350 | 770..1081 | 1560 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 16:24:56 has no hits.
BO04526.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:40:28 Download gff for
BO04526.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
rho-RA | 1..1068 | 17..1085 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:09:45 Download gff for
BO04526.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
rho-RA | 360..1435 | 16..1094 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:00:24 Download gff for
BO04526.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
rho-RA | 342..1406 | 17..1083 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:40:29 Download gff for
BO04526.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
rho-RA | 360..1435 | 16..1094 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:18:30 Download gff for
BO04526.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
rho-RA | 342..1406 | 17..1083 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:18:30 Download gff for
BO04526.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 1465487..1465822 | 17..352 | 100 | -> | Plus |
3L | 1466490..1466907 | 353..770 | 100 | -> | Plus |
3L | 1467040..1467350 | 771..1083 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:00:24 Download gff for
BO04526.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 1467040..1467350 | 771..1083 | 99 | | Plus |
arm_3L | 1465487..1465822 | 17..352 | 100 | -> | Plus |
arm_3L | 1466490..1466907 | 353..770 | 100 | -> | Plus |
BO04526.pep Sequence
Translation from 16 to 1099
> BO04526.pep
MENLTQNVNETKVDLGQEKEKEASQEEEHATAAKETIIDIPAACSSSSNS
SSYDTDCSTASSTCCTRQGEHIYMQREAIPATPLPESEDIGLLKYVHRQH
WPWFILVISIIEIAIFAYDRYTMPAQNFGLPVPIPSDSVLVYRPDRRLQV
WRFFSYMFLHANWFHLGFNIVIQLFFGIPLEVMHGTARIGVIYMAGVFAG
SLGTSVVDSEVFLVGASGGVYALLAAHLANITLNYAHMKSASTQLGSVVI
FVSCDLGYALYTQYFDGSAFAKGPQVSYIAHLTGALAGLTIGFLVLKNFG
HREYEQLIWWLALGVYCAFTVFAIVFNLINTVTAQLMEEQGEVITQHLLH
DLGVSASFLDH
BO04526.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:34:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
rho-PB | 355 | CG1004-PB | 1..355 | 1..355 | 1850 | 100 | Plus |
rho-PA | 355 | CG1004-PA | 1..355 | 1..355 | 1850 | 100 | Plus |
ru-PA | 341 | CG1214-PA | 24..340 | 28..354 | 740 | 46.7 | Plus |
stet-PA | 330 | CG33166-PA | 67..330 | 102..354 | 662 | 48.5 | Plus |
stet-PB | 485 | CG33166-PB | 222..485 | 102..354 | 662 | 48.5 | Plus |