Clone BO04526 Report

Search the DGRC for BO04526

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:45
Well:26
Vector:pDNR-Dual
Associated Gene/Transcriptrho-RA
Protein status:BO04526.pep: validated full length
Sequenced Size:1099

Clone Sequence Records

BO04526.3prime Sequence

949 bp (839 high quality bases) assembled on 2005-12-01

> BO04526.3prime
ATGGTCTAGAAAGCTTGCGGACACTCCCAGGTCGTGCAACAGATGCTGGG
TAATCACCTCACCCTGCTCCTCCATCAGCTGAGCGGTCACCGTGTTGATC
AGGTTGAAAACGATGGCGAAGACGGTGAAGGCACAGTAGACGCCCAACGC
TAGCCACCAGATGAGCTGCTCGTACTCTCGGTGACCGAAGTTCTTTAGCA
CCAGAAAGCCGATCGTTAGTCCTGCCAGGGCTCCCGTCAGGTGGGCAATG
TACGACACCTGGGGACCCTTGGCGAAGGCGCTTCCATCGAAGTATTGGGT
GTAGAGAGCATAGCCCAGATCGCAGGAGACAAAGATGACAACGGATCCGA
GTTGCGTGGATGCGCTCTTCATGTGCGCATAGTTCAGTGTAATGTTGGCC
AGATGTGCGGCCAACAGGGCATAGACGCCACCGCTGGCGCCCACCAGGAA
GACCTCCGAGTCGACGACACTGGTGCCCAGGGATCCGGCAAAAACGCCCG
CCATGTAGATCACGCCGATCCTGGCCGTGCCGTGCATCACCTCCAGGGGA
ATGCCAAAAAACAGCTGGATGACGATATTGAAGCCCAGGTGGAACCAGTT
GGCGTGCAGGAACATGTAGCTAAAGAAGCGCCACACCTGCAGACGCCGGT
CCGGCCGATAGACCAGCACCGAATCCGACGGAATCGGAACGGGTAGCCCG
AAATTCTGGGCGGGCATTGTGTAGCGGTCGTAGGCGAAGATGGCAATCTC
AATGATGGAGATCACTAGGATGAACCAGGGCCAGTGCTGGCGGTGGACGT
ACTTCAGCAGGCCGATATCCTCCGACTCCGGAAGTGGCGTGGCCGGGATG
GCCTCGCGTTGCATGTAGATGTGCTCGCCTTGGCGGGTGCAGCAGGTGCT
GCTCGCCGTGCTGCAATCGGTGTCGTACGACGAGGAGTTGGAGGAACTG

BO04526.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:07:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG1004-PA 1068 rho-RA 135..1065 949..19 4655 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:31:54
Subject Length Description Subject Range Query Range Score Percent Strand
rho-RB 3000 CG1004-RB 476..1406 949..19 4655 100 Minus
rho-RA 2531 CG1004-RA 476..1406 949..19 4655 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:31:43
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 1466488..1466907 749..330 2100 100 Minus
3L 28110227 3L 1467039..1467350 330..19 1560 100 Minus
3L 28110227 3L 1465621..1465822 949..748 1010 100 Minus
Blast to na_te.dros performed on 2015-02-10 17:31:48 has no hits.

BO04526.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:05:04 Download gff for BO04526.3prime
Subject Subject Range Query Range Percent Splice Strand
rho-PA 135..1068 15..949 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:19:01 Download gff for BO04526.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1004-PA 135..1068 15..949 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 02:42:05 Download gff for BO04526.3prime
Subject Subject Range Query Range Percent Splice Strand
rho-RA 476..1416 6..949 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:47:34 Download gff for BO04526.3prime
Subject Subject Range Query Range Percent Splice Strand
rho-RA 476..1416 6..949 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:47:34 Download gff for BO04526.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 1465621..1465822 748..949 100 -> Minus
3L 1466490..1466907 330..747 100 -> Minus
3L 1467040..1467360 6..329 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 02:42:05 Download gff for BO04526.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1465621..1465822 748..949 100 -> Minus
arm_3L 1466490..1466907 330..747 100 -> Minus
arm_3L 1467040..1467360 6..329 98   Minus

BO04526.5prime Sequence

892 bp (781 high quality bases) assembled on 2005-12-01

> BO04526.5prime
GAAGTTATCAGTCGACATGGAGAACTTAACGCAGAATGTAAACGAAACCA
AGGTGGATTTGGGCCAGGAGAAGGAGAAGGAGGCGTCGCAGGAGGAGGAG
CATGCCACCGCCGCCAAGGAGACCATCATTGACATTCCCGCCGCGTGCTC
CAGTTCCTCCAACTCCTCGTCGTACGACACCGATTGCAGCACGGCGAGCA
GCACCTGCTGCACCCGCCAAGGCGAGCACATCTACATGCAACGCGAGGCC
ATCCCGGCCACGCCACTTCCGGAGTCGGAGGATATCGGCCTGCTGAAGTA
CGTCCACCGCCAGCACTGGCCCTGGTTCATCCTAGTGATCTCCATCATTG
AGATTGCCATCTTCGCCTACGACCGCTACACAATGCCCGCCCAGAATTTC
GGGCTACCCGTTCCGATTCCGTCGGATTCGGTGCTGGTCTATCGGCCGGA
CCGGCGTCTGCAGGTGTGGCGCTTCTTTAGCTACATGTTCCTGCACGCCA
ACTGGTTCCACCTGGGCTTCAATATCGTCATCCAGCTGTTTTTTGGCATT
CCCCTGGAGGTGATGCACGGCACGGCCAGGATCGGCGTGATCTACATGGC
GGGCGTTTTTGCCGGATCCCTGGGCACCAGTGTCGTCGACTCGGAGGTCT
TCCTGGTGGGCGCCAGCGGTGGCGTCTATGCCCTGTTGGCCGCACATCTG
GCCAACATTACACTGAACTATGCGCACATGAAGAGCGCATCCACGCAACT
CGGATCCGTTGTCATCTTTGTCTCCTGCGATCTGGGCTATGCTCTCTACA
CCCAATACTTCGATGGAAGCGCCTTCGGCCAGGGTCCCCAGGTGTCGTAC
ATTGCCCACCTGACGGGAGCCCTGGCAGGACTAACGATCGGC

BO04526.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:07:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG1004-PA 1068 rho-RA 1..876 17..892 4330 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 05:35:53
Subject Length Description Subject Range Query Range Score Percent Strand
rho-RB 3000 CG1004-RB 341..1217 16..892 4355 99.8 Plus
rho-RA 2531 CG1004-RA 341..1217 16..892 4355 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 05:35:51
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 1466488..1466907 351..770 2100 100 Plus
3L 28110227 3L 1465486..1465822 16..352 1685 100 Plus
3L 28110227 3L 1467039..1467161 770..892 585 98.4 Plus
Blast to na_te.dros performed on 2015-02-13 05:35:52 has no hits.

BO04526.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:05:05 Download gff for BO04526.5prime
Subject Subject Range Query Range Percent Splice Strand
rho-PA 1..876 17..892 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:19:02 Download gff for BO04526.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1004-PA 1..876 17..892 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 17:54:18 Download gff for BO04526.5prime
Subject Subject Range Query Range Percent Splice Strand
rho-RA 341..1217 16..892 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:49:49 Download gff for BO04526.5prime
Subject Subject Range Query Range Percent Splice Strand
rho-RA 341..1217 16..892 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 07:49:49 Download gff for BO04526.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 1465486..1465822 16..352 100 -> Plus
3L 1466490..1466907 353..770 100 -> Plus
3L 1467040..1467161 771..892 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 17:54:18 Download gff for BO04526.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1465486..1465822 16..352 100 -> Plus
arm_3L 1466490..1466907 353..770 100 -> Plus
arm_3L 1467040..1467161 771..892 98   Plus

BO04526.complete Sequence

1099 bp (1099 high quality bases) assembled on 2005-09-08

GenBank Submission: FJ629791

> BO04526.complete
GAAGTTATCAGTCGACATGGAGAACTTAACGCAGAATGTAAACGAAACCA
AGGTGGATTTGGGCCAGGAGAAGGAGAAGGAGGCGTCGCAGGAGGAGGAG
CATGCCACCGCCGCCAAGGAGACCATCATTGACATTCCCGCCGCGTGCTC
CAGTTCCTCCAACTCCTCGTCGTACGACACCGATTGCAGCACGGCGAGCA
GCACCTGCTGCACCCGCCAAGGCGAGCACATCTACATGCAACGCGAGGCC
ATCCCGGCCACGCCACTTCCGGAGTCGGAGGATATCGGCCTGCTGAAGTA
CGTCCACCGCCAGCACTGGCCCTGGTTCATCCTAGTGATCTCCATCATTG
AGATTGCCATCTTCGCCTACGACCGCTACACAATGCCCGCCCAGAATTTC
GGGCTACCCGTTCCGATTCCGTCGGATTCGGTGCTGGTCTATCGGCCGGA
CCGGCGTCTGCAGGTGTGGCGCTTCTTTAGCTACATGTTCCTGCACGCCA
ACTGGTTCCACCTGGGCTTCAATATCGTCATCCAGCTGTTTTTTGGCATT
CCCCTGGAGGTGATGCACGGCACGGCCAGGATCGGCGTGATCTACATGGC
GGGCGTTTTTGCCGGATCCCTGGGCACCAGTGTCGTCGACTCGGAGGTCT
TCCTGGTGGGCGCCAGCGGTGGCGTCTATGCCCTGTTGGCCGCACATCTG
GCCAACATTACACTGAACTATGCGCACATGAAGAGCGCATCCACGCAACT
CGGATCCGTTGTCATCTTTGTCTCCTGCGATCTGGGCTATGCTCTCTACA
CCCAATACTTCGATGGAAGCGCCTTCGCCAAGGGTCCCCAGGTGTCGTAC
ATTGCCCACCTGACGGGAGCCCTGGCAGGACTAACGATCGGCTTTCTGGT
GCTAAAGAACTTCGGTCACCGAGAGTACGAGCAGCTCATCTGGTGGCTAG
CGTTGGGCGTCTACTGTGCCTTCACCGTCTTCGCCATCGTTTTCAACCTG
ATCAACACGGTGACCGCTCAGCTGATGGAGGAGCAGGGTGAGGTGATTAC
CCAGCATCTGTTGCACGACCTGGGAGTGTCCGCAAGCTTTCTAGACCAT

BO04526.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:24:57
Subject Length Description Subject Range Query Range Score Percent Strand
rho-RB 1068 CG1004-PB 1..1065 17..1081 5325 100 Plus
rho-RA 1068 CG1004-PA 1..1065 17..1081 5325 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:24:58
Subject Length Description Subject Range Query Range Score Percent Strand
rho-RB 3000 CG1004-RB 341..1406 16..1081 5330 100 Plus
rho-RA 2531 CG1004-RA 341..1406 16..1081 5330 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:24:55
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 1466488..1466907 351..770 2100 100 Plus
3L 28110227 3L 1465486..1465822 16..352 1685 100 Plus
3L 28110227 3L 1467039..1467350 770..1081 1560 100 Plus
Blast to na_te.dros performed on 2014-11-26 16:24:56 has no hits.

BO04526.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:40:28 Download gff for BO04526.complete
Subject Subject Range Query Range Percent Splice Strand
rho-RA 1..1068 17..1085 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:09:45 Download gff for BO04526.complete
Subject Subject Range Query Range Percent Splice Strand
rho-RA 360..1435 16..1094 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:00:24 Download gff for BO04526.complete
Subject Subject Range Query Range Percent Splice Strand
rho-RA 342..1406 17..1083 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:40:29 Download gff for BO04526.complete
Subject Subject Range Query Range Percent Splice Strand
rho-RA 360..1435 16..1094 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:18:30 Download gff for BO04526.complete
Subject Subject Range Query Range Percent Splice Strand
rho-RA 342..1406 17..1083 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:18:30 Download gff for BO04526.complete
Subject Subject Range Query Range Percent Splice Strand
3L 1465487..1465822 17..352 100 -> Plus
3L 1466490..1466907 353..770 100 -> Plus
3L 1467040..1467350 771..1083 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:00:24 Download gff for BO04526.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1467040..1467350 771..1083 99   Plus
arm_3L 1465487..1465822 17..352 100 -> Plus
arm_3L 1466490..1466907 353..770 100 -> Plus

BO04526.pep Sequence

Translation from 16 to 1099

> BO04526.pep
MENLTQNVNETKVDLGQEKEKEASQEEEHATAAKETIIDIPAACSSSSNS
SSYDTDCSTASSTCCTRQGEHIYMQREAIPATPLPESEDIGLLKYVHRQH
WPWFILVISIIEIAIFAYDRYTMPAQNFGLPVPIPSDSVLVYRPDRRLQV
WRFFSYMFLHANWFHLGFNIVIQLFFGIPLEVMHGTARIGVIYMAGVFAG
SLGTSVVDSEVFLVGASGGVYALLAAHLANITLNYAHMKSASTQLGSVVI
FVSCDLGYALYTQYFDGSAFAKGPQVSYIAHLTGALAGLTIGFLVLKNFG
HREYEQLIWWLALGVYCAFTVFAIVFNLINTVTAQLMEEQGEVITQHLLH
DLGVSASFLDH

BO04526.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:34:50
Subject Length Description Subject Range Query Range Score Percent Strand
rho-PB 355 CG1004-PB 1..355 1..355 1850 100 Plus
rho-PA 355 CG1004-PA 1..355 1..355 1850 100 Plus
ru-PA 341 CG1214-PA 24..340 28..354 740 46.7 Plus
stet-PA 330 CG33166-PA 67..330 102..354 662 48.5 Plus
stet-PB 485 CG33166-PB 222..485 102..354 662 48.5 Plus