Clone Sequence Records
BO04529.3prime Sequence
791 bp (740 high quality bases) assembled on 2005-12-01
> BO04529.3prime
ATGGTCTAGAAAGCTTGCTGTTGGCAATGTGTCAAAGTCGTCACCAACTG
AAACGATCGGAACGTGCTCCAAATTAACTTCAATCGGGTTGTCACATAGC
CTATTTCGTTTTGCAAATATATTCCAATCCATCACCTGCACGGCGTGCAG
ACTTTCCGCCTCGTTATGATGCCGCAACACCATGGACTCCTTAATTTTCT
CCCACTTGTCATCAACATCTTGCAGCCAGCTGAGGAGCAAACGTCCATTA
AAGCGGCAACGAGCACTCTTTTCCTTTTCATCCTGCTCCGGTGTGATCAT
GTTGTAGACCTCGTCGTCCTTCAAATACGTGCAAACGGAATAGGGCGCCG
GCTGTCCAGATATGCTCCTGGCCGCCTTCGAGTGAACGCGTATTATCTCC
TGCTCAACGTTCATGCATAGTTTCTCCCGCTCCACGGTGTGCGCTTCGAT
CAGATCTCGCCTGGCCTTCTCCTGATCCTGATAGATCCTCTCCATGGCCT
GCGGAACAGTGCGTGGAATATCCGGAACTGAGATCGTCGCATTGCGTCTT
AATAAGTAGGATTTCTTTGTCAGCAGATACTCGTTGTAACCTTGCGGAGG
TCTTGGCTTCACCGGATACAAGCTCTTCCACTTCTTTTCGATCTGACGAC
GGATGCTCAAGAACATCTGGAAGCCATTGGTGAAGGGATGGTCATGGGGG
TGAGATTCTTCGGAGTTGACACCGGAATCCGCCGCATTTGAGTTCTTCGA
ACTGTCGTCGGTGTTTTTCGGTCGAATCTTTCGCTTCCGTG
BO04529.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:07:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10984-PC | 1923 | CG10984-RC | 1148..1920 | 791..19 | 3865 | 100 | Minus |
| CG10984-PA | 1923 | CG10984-RA | 1148..1920 | 791..19 | 3865 | 100 | Minus |
| CG10984-PB | 1977 | CG10984-RB | 1202..1974 | 791..19 | 3865 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:23:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10984-RD | 2285 | CG10984-RD | 1265..2037 | 791..19 | 3865 | 100 | Minus |
| CG10984-RB | 2321 | CG10984-RB | 1301..2073 | 791..19 | 3865 | 100 | Minus |
| CG10984-RA | 2267 | CG10984-RA | 1247..2019 | 791..19 | 3865 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:23:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 12752321..12752923 | 791..189 | 3015 | 100 | Minus |
| 3L | 28110227 | 3L | 12752981..12753154 | 192..19 | 870 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 06:23:43 has no hits.
BO04529.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:05:09 Download gff for
BO04529.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10984-PC | 1148..1923 | 15..791 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:19:10 Download gff for
BO04529.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10984-PB | 1202..1977 | 15..791 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:26:42 Download gff for
BO04529.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10984-RA | 1247..2024 | 12..791 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:57:49 Download gff for
BO04529.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10984-RA | 1247..2024 | 12..791 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:57:49 Download gff for
BO04529.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 12752984..12753157 | 13..189 | 97 | <- | Minus |
| 3L | 12752321..12752922 | 190..791 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:26:42 Download gff for
BO04529.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 12745421..12746022 | 190..791 | 100 | -> | Minus |
| arm_3L | 12746084..12746257 | 13..189 | 97 | <- | Minus |
BO04529.5prime Sequence
819 bp (656 high quality bases) assembled on 2005-12-01
> BO04529.5prime
GAAGTTATCAGTCGACATGCCACCCCCAAGACCGAAGGGGATAGGATTTA
ATACAGGAGCTACCCAACCCAGATCGAACTCAAACACGCCAATGTCGGAG
AGGCAGCAAATGGCTCTGCTCATCCAAATGACAGCCAACTCGTCGACAGA
TTCATCCCGCACCACCTTAAAGAAGAATGAATGCAAGAAAGGAGACGCAG
AGACTGACGAGGGCAGCCTGAATGAGAAGCAAGAGGTCCTGGACACGAAA
GACAAATCTTCAGCGGAGGAGAGCAGCAACGATGGTAAATCCAGCGATAC
GAATCATCAGGGAACTTCGGCTGCCAAGCGCTGCTACTCAGACATAGAGG
AGGACTACGAGGAATCTGGCGAGGACGTAAAGAAAAAGAAGCGCAAGGAT
TCGGAGCATGGAAAGGACGTGAAGGGGGCCTCCCTGAAGCTCACATCGCG
CGTGGAGAAAAGCTCCAAGCTAGCTGCAACGAAGGGATCCCCGTCAGGAA
ACAAAAGCAGCGCTTCCAATGCCGAAAAGGAGCCGGCGGAGACTAGTAAG
AATGTAGATATTGAGAACGAAACGGAGTGCAGCGATGATTACAAGAGTAA
CGACAGCCTATACAACGGAGGACTCAAAGTGCCGCCATTAAAAATTGTGA
TTCCGCAGCAGAACTGCTCAATCGACACTGAGGGCAATGTGCTTCGAACT
GGCAAGGTGACTGCCTCTCGCAATGCCGCCCTGCCGTATGTGGTCAGCTC
CAATAGCGATTCCATTGACACCGTCATAACCAATCAATCTATTTAGCCCG
CACGAAAGTCCACAGAAAA
BO04529.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:07:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10984-PC | 1923 | CG10984-RC | 1..777 | 17..793 | 3885 | 100 | Plus |
| CG10984-PA | 1923 | CG10984-RA | 1..777 | 17..793 | 3885 | 100 | Plus |
| CG10984-PB | 1977 | CG10984-RB | 188..831 | 150..793 | 3220 | 100 | Plus |
| CG10984-PB | 1977 | CG10984-RB | 1..133 | 17..149 | 665 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:08:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10984-RD | 2285 | CG10984-RD | 118..917 | 17..817 | 3980 | 99.9 | Plus |
| CG10984-RA | 2267 | CG10984-RA | 100..899 | 17..817 | 3980 | 99.9 | Plus |
| CG10984-RC | 2254 | CG10984-RC | 87..886 | 17..817 | 3980 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:08:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 12751304..12751973 | 147..817 | 3305 | 99.9 | Plus |
| 3L | 28110227 | 3L | 12750607..12750739 | 17..149 | 665 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 01:08:39 has no hits.
BO04529.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:05:10 Download gff for
BO04529.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10984-PC | 1..798 | 17..815 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:19:11 Download gff for
BO04529.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10984-PA | 1..798 | 17..815 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 11:38:34 Download gff for
BO04529.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10984-RC | 87..884 | 17..815 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:05:14 Download gff for
BO04529.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10984-RC | 87..884 | 17..815 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 05:05:14 Download gff for
BO04529.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 12750602..12750739 | 10..149 | 97 | -> | Plus |
| 3L | 12751307..12751971 | 150..815 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 11:38:34 Download gff for
BO04529.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 12743702..12743839 | 10..149 | 97 | -> | Plus |
| arm_3L | 12744407..12745071 | 150..815 | 99 | | Plus |
BO04529.complete Sequence
1954 bp assembled on 2008-08-14
GenBank Submission: FJ629792
> BO04529.complete
GAAGTTATCAGTCGACATGCCACCCCCAAGACCGAAGGGGATAGGATTTA
ATACAGGAGCTACCCAACCCAGATCGAACTCAAACACGCCAATGTCGGAG
AGGCAGCAAATGGCTCTGCTCATCCAAATGACAGCCAACTCGTCGACAGA
TTCATCCCGCACCACCTTAAAGAAGAATGAATGCAAGAAAGGAGACGCAG
AGACTGACGAGGGCAGCCTGAATGAGAAGCAAGAGGTCCTGGACACGAAA
GACAAATCTTCAGCGGAGGAGAGCAGCAACGATGGTAAATCCAGCGATAC
GAATCATCAGGGAACTTCGGCTGCCAAGCGCTGCTACTCAGACATAGAGG
AGGACTACGAGGAATCTGGCGAGGACGTAAAGAAAAAGAAGCGCAAGGAT
TCGGAGCATGGAAAGGACGTGAAGGGGGCCTCCCTGAAGCTCACATCGCG
CGTGGAGAAAAGCTCCAAGCTAGCTGCAACGAAGGGATCCCCGTCAGGAA
ACAAAAGCAGCGCTTCCAATGCCGAAAAGGAGCCGGCGGAGACTAGTAAG
AATGTAGATATTGAGAACGAAACGGAGTGCAGCGATGATTACAAGAGTAA
CGACAGCCTATACAACGGAGGACTCAAAGTGCCGCCATTAAAAATTGTGA
TTCCGCAGCAGAACTGCTCAATCGACACTGAGGGCAATGTGCTTCGAACT
GGCAAGGTGACTGCCTCTCGCAATGCCGCCCTGCCGTATGTGGTCAGCTC
CAATAGCGATTCCATTGACACCGTCATAACCAATCAATCTATTAGCCCGC
ACGAAAGTCCACAGAAGAGCAATAGCATTTGCTCCACAGCCCTCGATGAC
AAGAATATAAAGCTCTTCAATGACGAAAAGAACCTGAGGGTCCTGCGAAG
CTCTCATCGCACTGGAGTGACCAGTGTGGAGCGCAGTTCCAATAACTCCT
CCCCGCAAATGCAGAGCAGCTCTCCATCGCCAGCGTCATCGAATCATGCC
AACGATCCTGCAGATGTGAAGCTCTCCTATAGCAACATGACATCTAGTCC
GATCCCGCAGGGCCACCAGTTTGACCAGGAGGCAATCACCAATGTTCCAA
GCCCGTCGACGTCGTCGACATCCTCGTCCAAGGACATAAATCCCTCGAAC
GTGGAACTCCATCCACGGAAGCGAAAGATTCGACCGAAAAACACCGACGA
CAGTTCGAAGAACTCAAATGCGGCGGATTCCGGTGTCAACTCCGAAGAAT
CTCACCCCCATGACCATCCCTTCACCAATGGCTTCCAGATGTTCTTGAGC
ATCCGTCGTCAGATCGAAAAGAAGTGGAAGAGCTTGTATCCGGTGAAGCC
AAGACCTCCGCAAGGTTACAACGAGTATCTGCTGACAAAGAAATCCTACT
TATTAAGACGCAATGCGACGATCTCAGTTCCGGATATTCCACGCACTGTT
CCGCAGGCCATGGAGAGGATCTATCAGGATCAGGAGAAGGCCAGGCGAGA
TCTGATCGAAGCGCACACCGTGGAGCGGGAGAAACTATGCATGAACGTTG
AGCAGGAGATAATACGCGTTCACTCGAAGGCGGCCAGGAGCATATCTGGA
CAGCCGGCGCCCTATTCCGTTTGCACGTATTTGAAGGACGACGAGGTCTA
CAACATGATCACACCGGAGCAGGATGAAAAGGAAAAGAGTGCTCGTTGCC
GCTTTAATGGACGTTTGCTCCTCAGCTGGCTGCAAGATGTTGATGACAAG
TGGGAGAAAATTAAGGAGTCCATGGTGTTGCGGCATCATAACGAGGCGGA
AAGTCTGCACGCCGTGCAGGTGATGGATTGGAATATATTTGCAAAACGAA
ATAGGCTATGTGACAACCCGATTGAAGTTAATTTGGAGCACGTTCCGATC
GTTTCAGTTGGTGACGACTTTGACACATTGCCAACAGCAAGCTTTCTAGA
CCAT
BO04529.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:45:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10984-RD | 1923 | CG10984-PD | 1..1920 | 17..1936 | 9600 | 100 | Plus |
| CG10984-RA | 1923 | CG10984-PA | 1..1920 | 17..1936 | 9600 | 100 | Plus |
| CG10984-RC | 1923 | CG10984-PC | 1..1920 | 17..1936 | 9600 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:45:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10984-RD | 2285 | CG10984-RD | 118..2037 | 17..1936 | 9600 | 100 | Plus |
| CG10984-RA | 2267 | CG10984-RA | 100..2019 | 17..1936 | 9600 | 100 | Plus |
| CG10984-RC | 2254 | CG10984-RC | 87..2006 | 17..1936 | 9600 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:45:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 12751304..12752923 | 147..1766 | 8100 | 100 | Plus |
| 3L | 28110227 | 3L | 12752981..12753154 | 1763..1936 | 870 | 100 | Plus |
| 3L | 28110227 | 3L | 12750607..12750739 | 17..149 | 665 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:45:50 has no hits.
BO04529.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:42:22 Download gff for
BO04529.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10984-RA | 95..2024 | 10..1943 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:11:15 Download gff for
BO04529.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10984-RC | 87..2006 | 17..1938 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:07:25 Download gff for
BO04529.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10984-RA | 100..2019 | 17..1938 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:27:45 Download gff for
BO04529.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10984-RC | 87..2006 | 17..1938 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:27:45 Download gff for
BO04529.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 12752984..12753154 | 1766..1938 | 98 | | Plus |
| 3L | 12750607..12750739 | 17..149 | 100 | -> | Plus |
| 3L | 12751307..12752922 | 150..1765 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:11:15 Download gff for
BO04529.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 12743707..12743839 | 17..149 | 100 | -> | Plus |
| arm_3L | 12744407..12746022 | 150..1765 | 100 | -> | Plus |
| arm_3L | 12746084..12746254 | 1766..1938 | 98 | | Plus |
BO04529.pep Sequence
Translation from 16 to 1954
> BO04529.pep
MPPPRPKGIGFNTGATQPRSNSNTPMSERQQMALLIQMTANSSTDSSRTT
LKKNECKKGDAETDEGSLNEKQEVLDTKDKSSAEESSNDGKSSDTNHQGT
SAAKRCYSDIEEDYEESGEDVKKKKRKDSEHGKDVKGASLKLTSRVEKSS
KLAATKGSPSGNKSSASNAEKEPAETSKNVDIENETECSDDYKSNDSLYN
GGLKVPPLKIVIPQQNCSIDTEGNVLRTGKVTASRNAALPYVVSSNSDSI
DTVITNQSISPHESPQKSNSICSTALDDKNIKLFNDEKNLRVLRSSHRTG
VTSVERSSNNSSPQMQSSSPSPASSNHANDPADVKLSYSNMTSSPIPQGH
QFDQEAITNVPSPSTSSTSSSKDINPSNVELHPRKRKIRPKNTDDSSKNS
NAADSGVNSEESHPHDHPFTNGFQMFLSIRRQIEKKWKSLYPVKPRPPQG
YNEYLLTKKSYLLRRNATISVPDIPRTVPQAMERIYQDQEKARRDLIEAH
TVEREKLCMNVEQEIIRVHSKAARSISGQPAPYSVCTYLKDDEVYNMITP
EQDEKEKSARCRFNGRLLLSWLQDVDDKWEKIKESMVLRHHNEAESLHAV
QVMDWNIFAKRNRLCDNPIEVNLEHVPIVSVGDDFDTLPTASFLDH
BO04529.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:54:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10984-PD | 640 | CG10984-PD | 1..640 | 1..640 | 3316 | 100 | Plus |
| CG10984-PA | 640 | CG10984-PA | 1..640 | 1..640 | 3316 | 100 | Plus |
| CG10984-PC | 640 | CG10984-PC | 1..640 | 1..640 | 3316 | 100 | Plus |
| CG10984-PB | 658 | CG10984-PB | 1..658 | 1..640 | 3280 | 97.1 | Plus |
| Muc68D-PB | 1514 | CG6004-PB | 786..1159 | 15..416 | 177 | 23.3 | Plus |
