Clone Sequence Records
BO04532.3prime Sequence
939 bp (835 high quality bases) assembled on 2005-12-01
> BO04532.3prime
ATGGTCTAGAAAGCTTGCCGAAGATTTTCCATTAAGTTTACTCAGTTCAG
TTGGTTCGCCACTATCGCCATGTACCAAGCGGGACTCGACGAGCGGTGCT
GAAATCTGCAAATGCAGAACGTAGTCGGCAGTTTGCTCCAAAAGGAATTC
CAGATCATCGGGGCAGTCTATCGTGGGGAAATCAATATTAGTCGACTCCT
TGAGGATCACACCAATAGTCTTGTCCGCACTCATCAGAAACAAAGGTGCA
TTCGCCTTGGCGAGCTCCTTTTGCAATGAGCCCATTCCGCGAGCTGCCGT
AAAATCGAATTCATGCACGTGGGCGCAATCCAAGACCACAGGTGCGGTTC
CATGAATGGTCAGAGCTTTTGAGATGCCCGAACGAACCCATTCGACTGCC
GGGAAGTACAGTGAACTGTGCTTAGGGCGAATCAGAATATAATTGATGCC
ATTGGTGGTTTGCAGTTTGGAGACACTCAGTACGGGTCGAGCGGCTCGGT
AAACCAGAAACGCCACATCGGTACTCACGCCCAGCAGAAGACCGATCTCG
ACGCCCACAGCCAGACTCATTACGAATGTAATGGCACCTGGAAGCAGCTC
CCGCCGGCTGCACCGCCACAGCGGCTTAATGACCTCGAACTCAATCATGA
ATATCACCGCCGAGATGATAACCGCACTGAGAGCAGCCTTCGGGATGTAC
TGGAAATAAGGTGCCAGGAGGCCGAGTGCCAACAGAACCAGCACGCTTGT
GTAGCAGCCTCCAAGCGGCGTCCTTACTCCACTGGCGTGGTTAACAGCGC
TGCGCGAGAAGGATCCTGTCACCGGCATGGAGCTGCAGAACGCGCCACAA
ATGTTGCTCATGGAAAGTGCAACCAGTTCCCGCGTCGGACTCAGTCAAGC
TCCTCCAAAGGCTTTCGAAATGGCTACATTTCCCAGCAC
BO04532.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:07:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6928-PB | 1839 | CG6928-RB | 916..1836 | 939..19 | 4555 | 99.7 | Minus |
| CG6928-PA | 1839 | CG6928-RA | 916..1836 | 939..19 | 4555 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 05:35:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6928-RA | 2323 | CG6928-RA | 1080..2000 | 939..19 | 4575 | 99.8 | Minus |
| CG6928-RB | 2310 | CG6928-RB | 1067..1987 | 939..19 | 4575 | 99.8 | Minus |
| CG6928-RD | 2432 | CG6928-RD | 1067..1876 | 939..130 | 4020 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 05:35:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 12006539..12007166 | 939..312 | 3110 | 99.7 | Minus |
| 3L | 28110227 | 3L | 12007220..12007400 | 312..132 | 905 | 100 | Minus |
| 3L | 28110227 | 3L | 12007616..12007728 | 131..19 | 565 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 05:35:59 has no hits.
BO04532.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:05:15 Download gff for
BO04532.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6928-PB | 916..1839 | 18..939 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:19:19 Download gff for
BO04532.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6928-PA | 916..1839 | 18..939 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 17:54:20 Download gff for
BO04532.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6928-RB | 1067..1987 | 19..939 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:50:01 Download gff for
BO04532.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6928-RB | 1067..1987 | 19..939 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 07:50:01 Download gff for
BO04532.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 12006539..12007166 | 312..939 | 99 | -> | Minus |
| 3L | 12007221..12007400 | 132..311 | 100 | -> | Minus |
| 3L | 12007616..12007728 | 19..131 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 17:54:20 Download gff for
BO04532.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 11999639..12000266 | 312..939 | 99 | -> | Minus |
| arm_3L | 12000321..12000500 | 132..311 | 100 | -> | Minus |
| arm_3L | 12000716..12000828 | 19..131 | 100 | | Minus |
BO04532.5prime Sequence
866 bp (784 high quality bases) assembled on 2005-12-01
> BO04532.5prime
GAAGTTATCAGTCGACATGAGCCTGAGGAAGTGGGGATACCGCCTGCTGC
CGGGTCTAAAGTGGCTGCACGGTTATACTGGCCAAGATGCAGTTGCGGAT
CTGATAGCCGGAGTGACGGTCGGCCTGACGGTGTTGCCCCAAGGACTGGC
CTACGCTACGCTGGCGGGACTGGAGCCCCAATATGGTCTGTACTCCGCCT
TTGTGGGCGGTATTATATACGCCATGCTGGGCAGCTGCCGGCAGGTGACC
ATTGGACCCACGGCTTTGCTCGCACTGATGACAAGCCGGCACACGGGATT
TGGACTGGGATCGGGTCCAGCGTACGCGATACTTTTGTGCCTCATCTCTG
GTGTTGTGGAGCTGGGTATGGCAGTGCTGAAACTGGGTGCCCTGGTGGAC
CTGATATCACTGCCAGTTACCGTGGGATTCACCTCGGCCACCGCCGTCAT
CATTGGCACCTCGCAGCTAAAGGGTTTGCTGGGACTGCGTGGTGGATCCG
GGTCTGATTTCATCAATACCATGCGCTCCGTGTTCGGAAATCTACACAAA
GTTAGAACTGGTGATTTTACCCTTGGTTTGACTTCCATTATAGTTTTGCT
ACTTCTGCGGAAACTAAAAGACGTTAAGCTGGATGGTCGAATCCGGAACT
TGCGAACACAGCAGCTTGTAAGTGGTAGCATCTGGGTAATAGGCACCGGT
CGGAATGCGCTGGTCGTACTGGTGACCAGTGTGCTGGCCTACAGCACATG
TGAGCAGATGGAGAGCTGCCCGTTCATCCTTACTGGAAAGGTCAAAAGCG
GTCTGCCCAACGTTTCACTGCCAAAGTTTGAGACCACCATACTGGACAGG
GATGGCACTGAAATCA
BO04532.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:07:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6928-PB | 1839 | CG6928-RB | 1..845 | 17..861 | 4200 | 99.8 | Plus |
| CG6928-PA | 1839 | CG6928-RA | 1..845 | 17..861 | 4200 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:09:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6928-RD | 2432 | CG6928-RD | 151..1001 | 16..866 | 4225 | 99.8 | Plus |
| CG6928-RC | 2445 | CG6928-RC | 164..1014 | 16..866 | 4225 | 99.8 | Plus |
| CG6928-RA | 2323 | CG6928-RA | 164..1014 | 16..866 | 4225 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:09:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 12005264..12005858 | 16..610 | 2975 | 100 | Plus |
| 3L | 28110227 | 3L | 12005916..12006172 | 610..866 | 1255 | 99.2 | Plus |
Blast to na_te.dros performed on 2015-02-13 00:09:11 has no hits.
BO04532.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:05:16 Download gff for
BO04532.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6928-PB | 1..849 | 17..865 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:19:20 Download gff for
BO04532.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6928-PA | 1..849 | 17..865 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 20:30:49 Download gff for
BO04532.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6928-RA | 156..1013 | 7..865 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:40:52 Download gff for
BO04532.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6928-RA | 156..1013 | 7..865 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:40:52 Download gff for
BO04532.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 12005256..12005858 | 7..610 | 99 | -> | Plus |
| 3L | 12005917..12006171 | 611..865 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 20:30:49 Download gff for
BO04532.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 11998356..11998958 | 7..610 | 99 | -> | Plus |
| arm_3L | 11999017..11999271 | 611..865 | 99 | | Plus |
BO04532.complete Sequence
1870 bp (1870 high quality bases) assembled on 2006-08-17
GenBank Submission: FJ629793
> BO04532.complete
GAAGTTATCAGTCGACATGAGCCTGAGGAAGTGGGGATACCGCCTGCTGC
CGGGTCTAAAGTGGCTGCACGGTTATACTGGCCAAGATGCAGTTGCGGAT
CTGATAGCCGGAGTGACGGTCGGCCTGACGGTGTTGCCCCAAGGACTGGC
CTACGCTACGCTGGCGGGACTGGAGCCCCAATATGGTCTGTACTCCGCCT
TTGTGGGCGGTATTATATACGCCATGCTGGGCAGCTGCCGGCAGGTGACC
ATTGGACCCACGGCTTTGCTCGCACTGATGACAAGCCGGCACACGGGATT
TGGACTGGGATCGGGTCCAGCGTACGCGATACTTTTGTGCCTCATCTCTG
GTGTTGTGGAGCTGGGTATGGCAGTGCTGAAACTGGGTGCCCTGGTGGAC
CTGATATCACTGCCAGTTACCGTGGGATTCACCTCGGCCACCGCCGTCAT
CATTGGCACCTCGCAGCTAAAGGGTTTGCTGGGACTGCGTGGTGGATCCG
GGTCTGATTTCATCAATACCATGCGCTCCGTGTTCGGAAATCTACACAAA
GTTAGAACTGGTGATTTTACCCTTGGTTTGACTTCCATTATAGTTTTGCT
ACTTCTGCGGAAACTAAAAGACGTTAAGCTGGATGGTCGAATCCGGAACT
TGCGAACACAGCAGCTTGTAAGTGGTAGCATCTGGGTAATAGGCACCGGT
CGGAATGCGCTGGTCGTACTGGTGACCAGTGTGCTGGCCTACAGCACATG
TGAGCAGATGGAGAGCTGCCCGTTCATCCTTACTGGAAAGGTCAAAAGCG
GTCTGCCCAACGTTTCACTGCCAAAGTTTGAGACCACCATACTGGACAGG
AATGGCACTGAGATCAGACAGAACTTTGAACAGATGCTCTCGGAACTGGG
CCCTTCCATGCTAATCCTACCCATTATAGCTGTGCTTGGAAATGTAGCCA
TTTCGAAAGCCTTTGGAGGAGCTGGACTGAGTCCGACGCGGGAACTGGTT
GCACTTTCCATGAGCAACATTTGTGGCGCGTTCTGCAGCTCCATGCCGGT
GACAGGATCCTTCTCGCGCAGCGCTGTTAACCACGCCAGTGGAGTAAGGA
CGCCGCTTGGAGGCTGCTACACAAGCGTGCTGGTTCTGTTGGCACTCGGC
CTCCTGGCACCTTATTTCCAGTACATCCCGAAGGCTGCTCTCAGTGCGGT
TATCATCTCGGCGGTGATATTCATGATTGAGTTCGAGGTCATTAAGCCGC
TGTGGCGGTGCAGCCGGCGGGAGCTGCTTCCAGGTGCCATTACATTCGTA
ATGAGTCTGGCTGTGGGCGTCGAGATCGGTCTTCTGCTGGGCGTGAGTAC
CGATGTGGCGTTTCTGGTTTACCGAGCCGCTCGACCCGTACTGAGTGTCT
CCAAACTGCAAACCACCAATGGCATCAATTATATTCTGATTCGCCCTAAG
CACAGTTCACTGTACTTCCCGGCAGTCGAATGGGTTCGTTCGGGCATCTC
AAAAGCTCTGACCATTCATGGAACCGCACCTGTGGTCTTGGATTGCGCCC
ACGTGCATGAATTCGATTTTACGGCAGCTCGCGGAATGGGCTCATTGCAA
AAGGAGCTCGCCAAGGCGAATGCACCTTTGTTTCTGATGAGTGCGGACAA
GACTATTGGTGTGATCCTCAAGGAGTCGACTAATATTGATTTCCCCACGA
TAGACTGCCCCGATGATCTGGAATTCCTTTTGGAGCAAACTGCCGACTAC
GTTCTGCATTTGCAGATTTCAGCACCGCTCGTCGAGTCCCGCTTGGTACA
TGGCGATAGTGGCGAACCAACTGAACTGAGTAAACTTAATGGAAAATCTT
CGGCAAGCTTTCTAGACCAT
BO04532.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:22:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6928-RA | 1839 | CG6928-PA | 1..1836 | 17..1852 | 9180 | 100 | Plus |
| CG6928-RB | 1839 | CG6928-PB | 1..1836 | 17..1852 | 9180 | 100 | Plus |
| CG6928-RD | 1740 | CG6928-PD | 1..1725 | 17..1741 | 8625 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:22:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6928-RA | 2323 | CG6928-RA | 164..2000 | 16..1852 | 9185 | 100 | Plus |
| CG6928-RB | 2310 | CG6928-RB | 151..1987 | 16..1852 | 9185 | 100 | Plus |
| CG6928-RD | 2432 | CG6928-RD | 151..1876 | 16..1741 | 8630 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:22:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 12006493..12007166 | 886..1559 | 3370 | 100 | Plus |
| 3L | 28110227 | 3L | 12005264..12005858 | 16..610 | 2975 | 100 | Plus |
| 3L | 28110227 | 3L | 12005916..12006192 | 610..886 | 1385 | 100 | Plus |
| 3L | 28110227 | 3L | 12007220..12007400 | 1559..1739 | 905 | 100 | Plus |
| 3L | 28110227 | 3L | 12007616..12007728 | 1740..1852 | 565 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 16:22:06 has no hits.
BO04532.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:04:15 Download gff for
BO04532.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6928-RA | 1..1839 | 17..1853 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:23:20 Download gff for
BO04532.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6928-RA | 156..2000 | 7..1852 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:55:45 Download gff for
BO04532.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6928-RB | 152..1987 | 17..1854 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:04:15 Download gff for
BO04532.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6928-RA | 156..2000 | 7..1852 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:16:55 Download gff for
BO04532.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6928-RB | 152..1987 | 17..1854 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:16:55 Download gff for
BO04532.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 12005265..12005858 | 17..610 | 100 | -> | Plus |
| 3L | 12005917..12006192 | 611..886 | 100 | -> | Plus |
| 3L | 12006494..12007166 | 887..1559 | 100 | -> | Plus |
| 3L | 12007221..12007400 | 1560..1739 | 100 | -> | Plus |
| 3L | 12007616..12007728 | 1740..1854 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:55:45 Download gff for
BO04532.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 11998365..11998958 | 17..610 | 100 | -> | Plus |
| arm_3L | 11999017..11999292 | 611..886 | 100 | -> | Plus |
| arm_3L | 11999594..12000266 | 887..1559 | 100 | -> | Plus |
| arm_3L | 12000321..12000500 | 1560..1739 | 100 | -> | Plus |
| arm_3L | 12000716..12000828 | 1740..1854 | 98 | | Plus |
BO04532.pep Sequence
Translation from 16 to 1870
> BO04532.pep
MSLRKWGYRLLPGLKWLHGYTGQDAVADLIAGVTVGLTVLPQGLAYATLA
GLEPQYGLYSAFVGGIIYAMLGSCRQVTIGPTALLALMTSRHTGFGLGSG
PAYAILLCLISGVVELGMAVLKLGALVDLISLPVTVGFTSATAVIIGTSQ
LKGLLGLRGGSGSDFINTMRSVFGNLHKVRTGDFTLGLTSIIVLLLLRKL
KDVKLDGRIRNLRTQQLVSGSIWVIGTGRNALVVLVTSVLAYSTCEQMES
CPFILTGKVKSGLPNVSLPKFETTILDRNGTEIRQNFEQMLSELGPSMLI
LPIIAVLGNVAISKAFGGAGLSPTRELVALSMSNICGAFCSSMPVTGSFS
RSAVNHASGVRTPLGGCYTSVLVLLALGLLAPYFQYIPKAALSAVIISAV
IFMIEFEVIKPLWRCSRRELLPGAITFVMSLAVGVEIGLLLGVSTDVAFL
VYRAARPVLSVSKLQTTNGINYILIRPKHSSLYFPAVEWVRSGISKALTI
HGTAPVVLDCAHVHEFDFTAARGMGSLQKELAKANAPLFLMSADKTIGVI
LKESTNIDFPTIDCPDDLEFLLEQTADYVLHLQISAPLVESRLVHGDSGE
PTELSKLNGKSSASFLDH
BO04532.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:04:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6928-PA | 612 | CG6928-PA | 1..612 | 1..612 | 3073 | 100 | Plus |
| CG6928-PB | 612 | CG6928-PB | 1..612 | 1..612 | 3073 | 100 | Plus |
| CG6928-PD | 579 | CG6928-PD | 1..579 | 1..579 | 2894 | 99.5 | Plus |
| CG6928-PC | 579 | CG6928-PC | 1..579 | 1..579 | 2894 | 99.5 | Plus |
| Esp-PB | 654 | CG7005-PB | 78..643 | 4..574 | 1102 | 41 | Plus |
