Clone Sequence Records
BO04533.3prime Sequence
837 bp (836 high quality bases) assembled on 2005-12-01
> BO04533.3prime
ATGGTCTAGAAAGCTTGCTTGGGGCGATGGATATGCGCCATGCTTGTCCT
TGATCACCCAGAAGGAGTCGACAATGGCGCCGTTCTGGTCATCGGACACC
TGCTCGAAGTGAAGATGCGTGCCATTATGTGCCTTCAAGCGGGTGTATCC
GTAATCATTGCTATGGTAGGCATTCCAGATGGGCAAATCGTTGGAGAAGG
GCTCGCGCTCCTCCTTGCAGCCGGCGGAACCCGTGATGATCTGGATGGGC
GCCTTGGGATTAGTGTATGGCGCCTCGGCACTGCCATTGTACACCTTGTA
GTCGTAGATTGGCCACAGGCGAGTGTAGAAGTGTTCATGCGCAAAGATCT
CCACGTCGACGCCGTGCTTGTAGAACAGATCCTCCAGGCCGAACCACTTG
AGCATGGGCAGACCCTGGCGAATGTACGTCTCCAGTTGGCTATTGCAATC
GTACTCCTTGTCGTCGCTGCAGTACATCGGTCGATGACCGTAGGTGATGA
TCCACGGACGTTTGGCCCGATTCTCGGGCAGATTGGCCTCGGCCAGGTCA
CGTTCCAGCCACTCGAATTGCTTGGTCAGCAACTTGAAGCCATAGCTGAG
GAAGTAGTAGACCTCCGTGGAGAAGGAGACAAAGTGCACGGGTCCCAAGT
TGAAGCTGTACCACAAGCTGTCCGTTTCGCCGGGCATATTGAAGCGGGCG
CGATAGTTGGAGAAGTTGTACTTCTCCTCGTGATTGCCCGGACAAACCAT
GTAGGGCACATAGGCAGCCACCGACTCGATCTGGCGCATGAATGCATCAC
CCACGGCAGCGTTGGAGGTGTCCATGTCGTAGGCAAA
BO04533.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:07:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1637-PC | 1353 | CG1637-RC | 532..1350 | 837..19 | 4095 | 100 | Minus |
CG1637-PB | 1377 | CG1637-RB | 661..716 | 738..683 | 180 | 92.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:08:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1637-RC | 1708 | CG1637-RC | 777..1595 | 837..19 | 4095 | 100 | Minus |
CG1637-RD | 2199 | CG1637-RD | 813..1573 | 834..74 | 715 | 73.7 | Minus |
CG1637-RB | 2196 | CG1637-RB | 810..1570 | 834..74 | 715 | 73.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:08:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 10870903..10871465 | 156..718 | 2815 | 100 | Plus |
X | 23542271 | X | 10870707..10870844 | 19..156 | 690 | 100 | Plus |
X | 23542271 | X | 10871529..10871647 | 719..837 | 595 | 100 | Plus |
X | 23542271 | X | 10874913..10875170 | 461..718 | 465 | 78.7 | Plus |
X | 23542271 | X | 10875242..10875356 | 720..834 | 245 | 80.9 | Plus |
X | 23542271 | X | 10872378..10872477 | 38..137 | 230 | 82 | Plus |
Blast to na_te.dros performed on 2015-02-12 01:08:50 has no hits.
BO04533.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:05:17 Download gff for
BO04533.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1637-PC | 535..1353 | 16..834 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:19:22 Download gff for
BO04533.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1637-PC | 535..1353 | 16..834 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 11:38:36 Download gff for
BO04533.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1637-RC | 780..1602 | 11..834 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:05:36 Download gff for
BO04533.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1637-RC | 780..1602 | 11..834 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 05:05:36 Download gff for
BO04533.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 10870700..10870844 | 11..156 | 97 | <- | Plus |
X | 10870904..10871465 | 157..718 | 100 | <- | Plus |
X | 10871529..10871644 | 719..834 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 11:38:36 Download gff for
BO04533.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 10764733..10764877 | 11..156 | 97 | <- | Plus |
arm_X | 10764937..10765498 | 157..718 | 100 | <- | Plus |
arm_X | 10765562..10765677 | 719..834 | 100 | | Plus |
BO04533.5prime Sequence
923 bp (793 high quality bases) assembled on 2005-11-29
> BO04533.5prime
GAAGTTATCAGTCGACATGCAGAGACTGCAATTCGCTCTGCTAGCGTCGC
TGCTCCTGCTGGTGCTGCTTCTTCCGGGGATTAGGAGCACTCCCATCGAC
CAGGACGTCGACATTGTTCACTATCAGCCGGAGCAAGTGCATCTGTCCTT
TGGAGACAATCTTCGTGATATTGTGGTGACATGGTCGACTCGAAGTTCCC
CCAACGCCTCGGTGGTTAAATTCTCGCGGAACTATCTAAAAGACGAGCCG
ATAATGGTGAACGGCACCTGGCAGCGATTCGTCGATGGTGGAAAGAAGGC
TCGCACTCAGTACATACACAATGTGGAACTGAAGGATCTGGAGCCGGACA
CGCGGTACGAGTACAGCTGCGGCAGTCCGCTCGGTTGGTCGGCGGTGTTC
AATTTCAAGACGCCACCGGCGGGTGAGAAGTGGTCGCCCTCGTTGGCCAT
TTTCGGTGACATGGGCAACGAGAATGCCCAGTCGATGGGCCGACTACAGC
AGGACACTGAGCGAGGCATGTACGATGCCATCATCCATGTGGGTGACTTT
GCCTACGACATGGACACCTCCAACGCTGCCGTGGGTGATGCATTCATGCG
CCAGATCGAGTCGGTGGCTGCCTATGTGCCCTACATGGTTTGTCCGGGCA
ATCACGAGGAGAAGTACAACTTCTCCAACTATCGCGCCCGCTTCAATATG
CCCGGCGAAACGGACAGCTTGTGGTACAGCTTCAACTTGGGACCCGTGCA
CTTTGTCTCCTTCTCCACGGAGGTCTACTACTTCCTCAGCTATGGCTTCA
AGTTGCTGACCAAGCAATTCGAGTGGCTGGAACGTGACCTGGCCGAGGCC
AATCTGCCCGAGAATCGGGGCCAAACGTCCGTGGATCATCACCTACGGTC
ATCGACCGATGTACTGCACCGAC
BO04533.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:07:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1637-PC | 1353 | CG1637-RC | 1..853 | 17..869 | 4265 | 100 | Plus |
CG1637-PB | 1377 | CG1637-RB | 1..140 | 17..156 | 700 | 100 | Plus |
CG1637-PA | 1362 | CG1637-RA | 1..140 | 17..156 | 700 | 100 | Plus |
CG1637-PC | 1353 | CG1637-RC | 851..901 | 868..918 | 255 | 100 | Plus |
CG1637-PB | 1377 | CG1637-RB | 529..576 | 515..562 | 215 | 97.9 | Plus |
CG1637-PB | 1377 | CG1637-RB | 661..716 | 647..702 | 180 | 92.8 | Plus |
CG1637-PA | 1362 | CG1637-RA | 501..546 | 520..565 | 155 | 93.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:09:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1637-RC | 1708 | CG1637-RC | 246..1151 | 17..923 | 4495 | 99.8 | Plus |
CG1637-RD | 2199 | CG1637-RD | 693..1179 | 431..918 | 975 | 80.4 | Plus |
CG1637-RB | 2196 | CG1637-RB | 690..1176 | 431..918 | 975 | 80.4 | Plus |
CG1637-RD | 2199 | CG1637-RD | 246..384 | 17..155 | 695 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:09:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 10871529..10872045 | 666..150 | 2570 | 99.8 | Minus |
X | 23542271 | X | 10871210..10871465 | 923..667 | 1220 | 99.2 | Minus |
X | 23542271 | X | 10877415..10877553 | 155..17 | 695 | 100 | Minus |
X | 23542271 | X | 10875242..10875476 | 665..431 | 560 | 82.6 | Minus |
X | 23542271 | X | 10874920..10875170 | 918..667 | 400 | 78.2 | Minus |
Blast to na_te.dros performed on 2015-02-13 00:09:55 has no hits.
BO04533.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:05:17 Download gff for
BO04533.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1637-PC | 1..906 | 17..923 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:19:23 Download gff for
BO04533.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1637-PC | 1..906 | 17..923 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 20:30:52 Download gff for
BO04533.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1637-RC | 240..1151 | 11..923 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:40:56 Download gff for
BO04533.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1637-RC | 240..1151 | 11..923 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:40:56 Download gff for
BO04533.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 10877415..10877559 | 11..155 | 97 | | Minus |
X | 10871210..10871465 | 667..923 | 99 | <- | Minus |
X | 10871529..10872039 | 156..666 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 20:30:52 Download gff for
BO04533.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 10765243..10765498 | 667..923 | 99 | <- | Minus |
arm_X | 10765562..10766072 | 156..666 | 100 | <- | Minus |
arm_X | 10771448..10771592 | 11..155 | 97 | | Minus |
BO04533.complete Sequence
1384 bp (1384 high quality bases) assembled on 2005-09-08
GenBank Submission: FJ629794
> BO04533.complete
GAAGTTATCAGTCGACATGCAGAGACTGCAATTCGCTCTGCTAGCGTCGC
TGCTCCTGCTGGTGCTGCTTCTTCCGGGGATTAGGAGCACTCCCATCGAC
CAGGACGTCGACATTGTTCACTATCAGCCGGAGCAAGTGCATCTGTCCTT
TGGAGACAATCTTCGTGATATTGTGGTGACATGGTCGACTCGAAGTTCCC
CCAACGCCTCGGTGGTTAAATTCTCGCGGAACTATCTAAAAGACGAGCCG
ATAATGGTGAACGGCACCTGGCAGCGATTCGTCGATGGTGGAAAGAAGGC
TCGCACTCAGTACATACACAATGTGGAACTGAAGGATCTGGAGCCGGACA
CGCGGTACGAGTACAGCTGCGGCAGTCCGCTCGGTTGGTCGGCGGTGTTC
AATTTCAAGACGCCACCGGCGGGTGAGAAGTGGTCGCCCTCGTTGGCCAT
TTTCGGTGACATGGGCAACGAGAATGCCCAGTCGATGGGCCGACTACAGC
AGGACACTGAGCGAGGCATGTACGATGCCATCATCCATGTGGGTGACTTT
GCCTACGACATGGACACCTCCAACGCTGCCGTGGGTGATGCATTCATGCG
CCAGATCGAGTCGGTGGCTGCCTATGTGCCCTACATGGTTTGTCCGGGCA
ATCACGAGGAGAAGTACAACTTCTCCAACTATCGCGCCCGCTTCAATATG
CCCGGCGAAACGGACAGCTTGTGGTACAGCTTCAACTTGGGACCCGTGCA
CTTTGTCTCCTTCTCCACGGAGGTCTACTACTTCCTCAGCTATGGCTTCA
AGTTGCTGACCAAGCAATTCGAGTGGCTGGAACGTGACCTGGCCGAGGCC
AATCTGCCCGAGAATCGGGCCAAACGTCCGTGGATCATCACCTACGGTCA
TCGACCGATGTACTGCAGCGACGACAAGGAGTACGATTGCAATAGCCAAC
TGGAGACGTACATTCGCCAGGGTCTGCCCATGCTCAAGTGGTTCGGCCTG
GAGGATCTGTTCTACAAGCACGGCGTCGACGTGGAGATCTTTGCGCATGA
ACACTTCTACACTCGCCTGTGGCCAATCTACGACTACAAGGTGTACAATG
GCAGTGCCGAGGCGCCATACACTAATCCCAAGGCGCCCATCCAGATCATC
ACGGGTTCCGCCGGCTGCAAGGAGGAGCGCGAGCCCTTCTCCAACGATTT
GCCCATCTGGAATGCCTACCATAGCAATGATTACGGATACACCCGCTTGA
AGGCACATAATGGCACGCATCTTCACTTCGAGCAGGTGTCCGATGACCAG
AACGGCGCCATTGTCGACTCCTTCTGGGTGATCAAGGACAAGCATGGCGC
ATATCCATCGCCCCAAGCAAGCTTTCTAGACCAT
BO04533.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:39:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1637-RC | 1353 | CG1637-PC | 1..1350 | 17..1366 | 6750 | 100 | Plus |
CG1637-RD | 1380 | CG1637-PD | 448..941 | 431..924 | 1015 | 80.4 | Plus |
CG1637-RB | 1377 | CG1637-PB | 445..938 | 431..924 | 1015 | 80.4 | Plus |
CG1637-RD | 1380 | CG1637-PD | 1..139 | 17..155 | 695 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:39:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1637-RC | 1708 | CG1637-RC | 246..1595 | 17..1366 | 6750 | 100 | Plus |
CG1637-RD | 2199 | CG1637-RD | 693..1186 | 431..924 | 1015 | 80.4 | Plus |
CG1637-RB | 2196 | CG1637-RB | 690..1183 | 431..924 | 1015 | 80.4 | Plus |
CG1637-RD | 2199 | CG1637-RD | 246..384 | 17..155 | 695 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:39:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 10870903..10871465 | 1229..667 | 2815 | 100 | Minus |
X | 23542271 | X | 10871529..10872045 | 666..150 | 2570 | 99.8 | Minus |
X | 23542271 | X | 10877415..10877553 | 155..17 | 695 | 100 | Minus |
X | 23542271 | X | 10870707..10870844 | 1366..1229 | 690 | 100 | Minus |
X | 23542271 | X | 10875242..10875476 | 665..431 | 560 | 82.6 | Minus |
X | 23542271 | X | 10874913..10875170 | 924..667 | 465 | 78.7 | Minus |
X | 23542271 | X | 10872378..10872477 | 1347..1248 | 230 | 82 | Minus |
Blast to na_te.dros performed on 2014-11-27 15:39:05 has no hits.
BO04533.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:40:30 Download gff for
BO04533.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1637-RC | 1..1353 | 17..1369 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:09:51 Download gff for
BO04533.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1637-RC | 249..1611 | 11..1374 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:44:12 Download gff for
BO04533.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1637-RC | 246..1595 | 17..1368 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:40:30 Download gff for
BO04533.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1637-RC | 249..1611 | 11..1374 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:12:57 Download gff for
BO04533.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1637-RC | 246..1595 | 17..1368 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:12:57 Download gff for
BO04533.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 10870704..10870844 | 1229..1368 | 98 | <- | Minus |
X | 10870904..10871465 | 667..1228 | 100 | <- | Minus |
X | 10871529..10872039 | 156..666 | 100 | <- | Minus |
X | 10877415..10877553 | 17..155 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:44:12 Download gff for
BO04533.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 10764737..10764877 | 1229..1368 | 98 | <- | Minus |
arm_X | 10764937..10765498 | 667..1228 | 100 | <- | Minus |
arm_X | 10765562..10766072 | 156..666 | 100 | <- | Minus |
arm_X | 10771448..10771586 | 17..155 | 100 | | Minus |
BO04533.pep Sequence
Translation from 16 to 1384
> BO04533.pep
MQRLQFALLASLLLLVLLLPGIRSTPIDQDVDIVHYQPEQVHLSFGDNLR
DIVVTWSTRSSPNASVVKFSRNYLKDEPIMVNGTWQRFVDGGKKARTQYI
HNVELKDLEPDTRYEYSCGSPLGWSAVFNFKTPPAGEKWSPSLAIFGDMG
NENAQSMGRLQQDTERGMYDAIIHVGDFAYDMDTSNAAVGDAFMRQIESV
AAYVPYMVCPGNHEEKYNFSNYRARFNMPGETDSLWYSFNLGPVHFVSFS
TEVYYFLSYGFKLLTKQFEWLERDLAEANLPENRAKRPWIITYGHRPMYC
SDDKEYDCNSQLETYIRQGLPMLKWFGLEDLFYKHGVDVEIFAHEHFYTR
LWPIYDYKVYNGSAEAPYTNPKAPIQIITGSAGCKEEREPFSNDLPIWNA
YHSNDYGYTRLKAHNGTHLHFEQVSDDQNGAIVDSFWVIKDKHGAYPSPQ
ASFLDH
BO04533.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:34:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1637-PC | 450 | CG1637-PC | 1..450 | 1..450 | 2457 | 100 | Plus |
CG1637-PB | 458 | CG1637-PB | 1..456 | 1..446 | 1659 | 68.4 | Plus |
CG1637-PD | 459 | CG1637-PD | 1..457 | 1..446 | 1657 | 68.5 | Plus |
CG1637-PE | 453 | CG1637-PE | 1..446 | 1..448 | 1604 | 65.4 | Plus |
CG1637-PA | 453 | CG1637-PA | 1..446 | 1..448 | 1604 | 65.4 | Plus |