Clone BO04533 Report

Search the DGRC for BO04533

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:45
Well:33
Vector:pDNR-Dual
Associated Gene/TranscriptCG1637-RC
Protein status:BO04533.pep: validated full length
Sequenced Size:1384

Clone Sequence Records

BO04533.3prime Sequence

837 bp (836 high quality bases) assembled on 2005-12-01

> BO04533.3prime
ATGGTCTAGAAAGCTTGCTTGGGGCGATGGATATGCGCCATGCTTGTCCT
TGATCACCCAGAAGGAGTCGACAATGGCGCCGTTCTGGTCATCGGACACC
TGCTCGAAGTGAAGATGCGTGCCATTATGTGCCTTCAAGCGGGTGTATCC
GTAATCATTGCTATGGTAGGCATTCCAGATGGGCAAATCGTTGGAGAAGG
GCTCGCGCTCCTCCTTGCAGCCGGCGGAACCCGTGATGATCTGGATGGGC
GCCTTGGGATTAGTGTATGGCGCCTCGGCACTGCCATTGTACACCTTGTA
GTCGTAGATTGGCCACAGGCGAGTGTAGAAGTGTTCATGCGCAAAGATCT
CCACGTCGACGCCGTGCTTGTAGAACAGATCCTCCAGGCCGAACCACTTG
AGCATGGGCAGACCCTGGCGAATGTACGTCTCCAGTTGGCTATTGCAATC
GTACTCCTTGTCGTCGCTGCAGTACATCGGTCGATGACCGTAGGTGATGA
TCCACGGACGTTTGGCCCGATTCTCGGGCAGATTGGCCTCGGCCAGGTCA
CGTTCCAGCCACTCGAATTGCTTGGTCAGCAACTTGAAGCCATAGCTGAG
GAAGTAGTAGACCTCCGTGGAGAAGGAGACAAAGTGCACGGGTCCCAAGT
TGAAGCTGTACCACAAGCTGTCCGTTTCGCCGGGCATATTGAAGCGGGCG
CGATAGTTGGAGAAGTTGTACTTCTCCTCGTGATTGCCCGGACAAACCAT
GTAGGGCACATAGGCAGCCACCGACTCGATCTGGCGCATGAATGCATCAC
CCACGGCAGCGTTGGAGGTGTCCATGTCGTAGGCAAA

BO04533.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:07:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG1637-PC 1353 CG1637-RC 532..1350 837..19 4095 100 Minus
CG1637-PB 1377 CG1637-RB 661..716 738..683 180 92.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:08:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG1637-RC 1708 CG1637-RC 777..1595 837..19 4095 100 Minus
CG1637-RD 2199 CG1637-RD 813..1573 834..74 715 73.7 Minus
CG1637-RB 2196 CG1637-RB 810..1570 834..74 715 73.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:08:46
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 10870903..10871465 156..718 2815 100 Plus
X 23542271 X 10870707..10870844 19..156 690 100 Plus
X 23542271 X 10871529..10871647 719..837 595 100 Plus
X 23542271 X 10874913..10875170 461..718 465 78.7 Plus
X 23542271 X 10875242..10875356 720..834 245 80.9 Plus
X 23542271 X 10872378..10872477 38..137 230 82 Plus
Blast to na_te.dros performed on 2015-02-12 01:08:50 has no hits.

BO04533.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:05:17 Download gff for BO04533.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1637-PC 535..1353 16..834 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:19:22 Download gff for BO04533.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1637-PC 535..1353 16..834 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 11:38:36 Download gff for BO04533.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1637-RC 780..1602 11..834 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:05:36 Download gff for BO04533.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1637-RC 780..1602 11..834 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 05:05:36 Download gff for BO04533.3prime
Subject Subject Range Query Range Percent Splice Strand
X 10870700..10870844 11..156 97 <- Plus
X 10870904..10871465 157..718 100 <- Plus
X 10871529..10871644 719..834 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 11:38:36 Download gff for BO04533.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 10764733..10764877 11..156 97 <- Plus
arm_X 10764937..10765498 157..718 100 <- Plus
arm_X 10765562..10765677 719..834 100   Plus

BO04533.5prime Sequence

923 bp (793 high quality bases) assembled on 2005-11-29

> BO04533.5prime
GAAGTTATCAGTCGACATGCAGAGACTGCAATTCGCTCTGCTAGCGTCGC
TGCTCCTGCTGGTGCTGCTTCTTCCGGGGATTAGGAGCACTCCCATCGAC
CAGGACGTCGACATTGTTCACTATCAGCCGGAGCAAGTGCATCTGTCCTT
TGGAGACAATCTTCGTGATATTGTGGTGACATGGTCGACTCGAAGTTCCC
CCAACGCCTCGGTGGTTAAATTCTCGCGGAACTATCTAAAAGACGAGCCG
ATAATGGTGAACGGCACCTGGCAGCGATTCGTCGATGGTGGAAAGAAGGC
TCGCACTCAGTACATACACAATGTGGAACTGAAGGATCTGGAGCCGGACA
CGCGGTACGAGTACAGCTGCGGCAGTCCGCTCGGTTGGTCGGCGGTGTTC
AATTTCAAGACGCCACCGGCGGGTGAGAAGTGGTCGCCCTCGTTGGCCAT
TTTCGGTGACATGGGCAACGAGAATGCCCAGTCGATGGGCCGACTACAGC
AGGACACTGAGCGAGGCATGTACGATGCCATCATCCATGTGGGTGACTTT
GCCTACGACATGGACACCTCCAACGCTGCCGTGGGTGATGCATTCATGCG
CCAGATCGAGTCGGTGGCTGCCTATGTGCCCTACATGGTTTGTCCGGGCA
ATCACGAGGAGAAGTACAACTTCTCCAACTATCGCGCCCGCTTCAATATG
CCCGGCGAAACGGACAGCTTGTGGTACAGCTTCAACTTGGGACCCGTGCA
CTTTGTCTCCTTCTCCACGGAGGTCTACTACTTCCTCAGCTATGGCTTCA
AGTTGCTGACCAAGCAATTCGAGTGGCTGGAACGTGACCTGGCCGAGGCC
AATCTGCCCGAGAATCGGGGCCAAACGTCCGTGGATCATCACCTACGGTC
ATCGACCGATGTACTGCACCGAC

BO04533.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:07:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG1637-PC 1353 CG1637-RC 1..853 17..869 4265 100 Plus
CG1637-PB 1377 CG1637-RB 1..140 17..156 700 100 Plus
CG1637-PA 1362 CG1637-RA 1..140 17..156 700 100 Plus
CG1637-PC 1353 CG1637-RC 851..901 868..918 255 100 Plus
CG1637-PB 1377 CG1637-RB 529..576 515..562 215 97.9 Plus
CG1637-PB 1377 CG1637-RB 661..716 647..702 180 92.8 Plus
CG1637-PA 1362 CG1637-RA 501..546 520..565 155 93.4 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:09:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG1637-RC 1708 CG1637-RC 246..1151 17..923 4495 99.8 Plus
CG1637-RD 2199 CG1637-RD 693..1179 431..918 975 80.4 Plus
CG1637-RB 2196 CG1637-RB 690..1176 431..918 975 80.4 Plus
CG1637-RD 2199 CG1637-RD 246..384 17..155 695 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:09:52
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 10871529..10872045 666..150 2570 99.8 Minus
X 23542271 X 10871210..10871465 923..667 1220 99.2 Minus
X 23542271 X 10877415..10877553 155..17 695 100 Minus
X 23542271 X 10875242..10875476 665..431 560 82.6 Minus
X 23542271 X 10874920..10875170 918..667 400 78.2 Minus
Blast to na_te.dros performed on 2015-02-13 00:09:55 has no hits.

BO04533.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:05:17 Download gff for BO04533.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1637-PC 1..906 17..923 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:19:23 Download gff for BO04533.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1637-PC 1..906 17..923 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 20:30:52 Download gff for BO04533.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1637-RC 240..1151 11..923 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:40:56 Download gff for BO04533.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1637-RC 240..1151 11..923 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:40:56 Download gff for BO04533.5prime
Subject Subject Range Query Range Percent Splice Strand
X 10877415..10877559 11..155 97   Minus
X 10871210..10871465 667..923 99 <- Minus
X 10871529..10872039 156..666 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 20:30:52 Download gff for BO04533.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 10765243..10765498 667..923 99 <- Minus
arm_X 10765562..10766072 156..666 100 <- Minus
arm_X 10771448..10771592 11..155 97   Minus

BO04533.complete Sequence

1384 bp (1384 high quality bases) assembled on 2005-09-08

GenBank Submission: FJ629794

> BO04533.complete
GAAGTTATCAGTCGACATGCAGAGACTGCAATTCGCTCTGCTAGCGTCGC
TGCTCCTGCTGGTGCTGCTTCTTCCGGGGATTAGGAGCACTCCCATCGAC
CAGGACGTCGACATTGTTCACTATCAGCCGGAGCAAGTGCATCTGTCCTT
TGGAGACAATCTTCGTGATATTGTGGTGACATGGTCGACTCGAAGTTCCC
CCAACGCCTCGGTGGTTAAATTCTCGCGGAACTATCTAAAAGACGAGCCG
ATAATGGTGAACGGCACCTGGCAGCGATTCGTCGATGGTGGAAAGAAGGC
TCGCACTCAGTACATACACAATGTGGAACTGAAGGATCTGGAGCCGGACA
CGCGGTACGAGTACAGCTGCGGCAGTCCGCTCGGTTGGTCGGCGGTGTTC
AATTTCAAGACGCCACCGGCGGGTGAGAAGTGGTCGCCCTCGTTGGCCAT
TTTCGGTGACATGGGCAACGAGAATGCCCAGTCGATGGGCCGACTACAGC
AGGACACTGAGCGAGGCATGTACGATGCCATCATCCATGTGGGTGACTTT
GCCTACGACATGGACACCTCCAACGCTGCCGTGGGTGATGCATTCATGCG
CCAGATCGAGTCGGTGGCTGCCTATGTGCCCTACATGGTTTGTCCGGGCA
ATCACGAGGAGAAGTACAACTTCTCCAACTATCGCGCCCGCTTCAATATG
CCCGGCGAAACGGACAGCTTGTGGTACAGCTTCAACTTGGGACCCGTGCA
CTTTGTCTCCTTCTCCACGGAGGTCTACTACTTCCTCAGCTATGGCTTCA
AGTTGCTGACCAAGCAATTCGAGTGGCTGGAACGTGACCTGGCCGAGGCC
AATCTGCCCGAGAATCGGGCCAAACGTCCGTGGATCATCACCTACGGTCA
TCGACCGATGTACTGCAGCGACGACAAGGAGTACGATTGCAATAGCCAAC
TGGAGACGTACATTCGCCAGGGTCTGCCCATGCTCAAGTGGTTCGGCCTG
GAGGATCTGTTCTACAAGCACGGCGTCGACGTGGAGATCTTTGCGCATGA
ACACTTCTACACTCGCCTGTGGCCAATCTACGACTACAAGGTGTACAATG
GCAGTGCCGAGGCGCCATACACTAATCCCAAGGCGCCCATCCAGATCATC
ACGGGTTCCGCCGGCTGCAAGGAGGAGCGCGAGCCCTTCTCCAACGATTT
GCCCATCTGGAATGCCTACCATAGCAATGATTACGGATACACCCGCTTGA
AGGCACATAATGGCACGCATCTTCACTTCGAGCAGGTGTCCGATGACCAG
AACGGCGCCATTGTCGACTCCTTCTGGGTGATCAAGGACAAGCATGGCGC
ATATCCATCGCCCCAAGCAAGCTTTCTAGACCAT

BO04533.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:39:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG1637-RC 1353 CG1637-PC 1..1350 17..1366 6750 100 Plus
CG1637-RD 1380 CG1637-PD 448..941 431..924 1015 80.4 Plus
CG1637-RB 1377 CG1637-PB 445..938 431..924 1015 80.4 Plus
CG1637-RD 1380 CG1637-PD 1..139 17..155 695 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:39:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG1637-RC 1708 CG1637-RC 246..1595 17..1366 6750 100 Plus
CG1637-RD 2199 CG1637-RD 693..1186 431..924 1015 80.4 Plus
CG1637-RB 2196 CG1637-RB 690..1183 431..924 1015 80.4 Plus
CG1637-RD 2199 CG1637-RD 246..384 17..155 695 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:39:04
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 10870903..10871465 1229..667 2815 100 Minus
X 23542271 X 10871529..10872045 666..150 2570 99.8 Minus
X 23542271 X 10877415..10877553 155..17 695 100 Minus
X 23542271 X 10870707..10870844 1366..1229 690 100 Minus
X 23542271 X 10875242..10875476 665..431 560 82.6 Minus
X 23542271 X 10874913..10875170 924..667 465 78.7 Minus
X 23542271 X 10872378..10872477 1347..1248 230 82 Minus
Blast to na_te.dros performed on 2014-11-27 15:39:05 has no hits.

BO04533.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:40:30 Download gff for BO04533.complete
Subject Subject Range Query Range Percent Splice Strand
CG1637-RC 1..1353 17..1369 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:09:51 Download gff for BO04533.complete
Subject Subject Range Query Range Percent Splice Strand
CG1637-RC 249..1611 11..1374 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:44:12 Download gff for BO04533.complete
Subject Subject Range Query Range Percent Splice Strand
CG1637-RC 246..1595 17..1368 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:40:30 Download gff for BO04533.complete
Subject Subject Range Query Range Percent Splice Strand
CG1637-RC 249..1611 11..1374 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:12:57 Download gff for BO04533.complete
Subject Subject Range Query Range Percent Splice Strand
CG1637-RC 246..1595 17..1368 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:12:57 Download gff for BO04533.complete
Subject Subject Range Query Range Percent Splice Strand
X 10870704..10870844 1229..1368 98 <- Minus
X 10870904..10871465 667..1228 100 <- Minus
X 10871529..10872039 156..666 100 <- Minus
X 10877415..10877553 17..155 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:44:12 Download gff for BO04533.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 10764737..10764877 1229..1368 98 <- Minus
arm_X 10764937..10765498 667..1228 100 <- Minus
arm_X 10765562..10766072 156..666 100 <- Minus
arm_X 10771448..10771586 17..155 100   Minus

BO04533.pep Sequence

Translation from 16 to 1384

> BO04533.pep
MQRLQFALLASLLLLVLLLPGIRSTPIDQDVDIVHYQPEQVHLSFGDNLR
DIVVTWSTRSSPNASVVKFSRNYLKDEPIMVNGTWQRFVDGGKKARTQYI
HNVELKDLEPDTRYEYSCGSPLGWSAVFNFKTPPAGEKWSPSLAIFGDMG
NENAQSMGRLQQDTERGMYDAIIHVGDFAYDMDTSNAAVGDAFMRQIESV
AAYVPYMVCPGNHEEKYNFSNYRARFNMPGETDSLWYSFNLGPVHFVSFS
TEVYYFLSYGFKLLTKQFEWLERDLAEANLPENRAKRPWIITYGHRPMYC
SDDKEYDCNSQLETYIRQGLPMLKWFGLEDLFYKHGVDVEIFAHEHFYTR
LWPIYDYKVYNGSAEAPYTNPKAPIQIITGSAGCKEEREPFSNDLPIWNA
YHSNDYGYTRLKAHNGTHLHFEQVSDDQNGAIVDSFWVIKDKHGAYPSPQ
ASFLDH

BO04533.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:34:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG1637-PC 450 CG1637-PC 1..450 1..450 2457 100 Plus
CG1637-PB 458 CG1637-PB 1..456 1..446 1659 68.4 Plus
CG1637-PD 459 CG1637-PD 1..457 1..446 1657 68.5 Plus
CG1637-PE 453 CG1637-PE 1..446 1..448 1604 65.4 Plus
CG1637-PA 453 CG1637-PA 1..446 1..448 1604 65.4 Plus