Clone Sequence Records
BO04547.5prime Sequence
606 bp (492 high quality bases) assembled on 2005-12-01
> BO04547.5prime
GAAGTTATCAGTCGACATGGCGGGAGAAATGCCCATTAAGCCCTGGGACG
GACTGCGATACGCTTTCGAATCATGTGACGCAATGCTTCGTGACTCAGAA
ACAAAGGAGCTGACCAAGAAAAGCTTTGATTTGGCTATATTAGATGGAGC
TTTCCCAGAGTGCTTCTTGGGATTAATGTACGACTTCAAGATTCCATTTA
TGTACATAAACACGGTGGGATTCTACACAGGCAGTATCTCGACTGCAGGA
AATCCCGTTAGCTACGCTATTACTCCCAACTTCTATTCTCGATTTACGGA
CACAATGAATCTTTACGAACGTGCTATTAATACGGCCATGCAGATTGGAC
AAACACTGATGCACATGTATGTTATGCGTCGGACTCACCTTGTGATGCGA
GAGCACTTGGGTACTCAAATCCCGCATCCTTACGAAATGTCGCGCAACGT
GAGTTTCATTTTGCAAAATGGACACGCAGTTTTGTCTTATCCTAGAGCCT
TTAATCCGAATGTAGCAGAAGTGGCTTGCTTTCATTGTAGGCCAGCTAGA
AAACTTCCTAAAACCTTGAGGAATTCATCGGTGCTTCTGGAGCATCTGGA
TTTATT
BO04547.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:07:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30438-PB | 1575 | CG30438-RB | 267..811 | 16..560 | 2700 | 99.8 | Plus |
CG30438-PC | 1575 | CG30438-RC | 267..811 | 16..560 | 2700 | 99.8 | Plus |
CG30438-PD | 1575 | CG30438-RD | 267..811 | 16..560 | 2700 | 99.8 | Plus |
CG30438-PA | 1308 | CG30438-RA | 1..544 | 17..560 | 2695 | 99.8 | Plus |
CG30438-PB | 1575 | CG30438-RB | 813..858 | 561..606 | 230 | 100 | Plus |
CG30438-PC | 1575 | CG30438-RC | 813..858 | 561..606 | 230 | 100 | Plus |
CG30438-PD | 1575 | CG30438-RD | 813..858 | 561..606 | 230 | 100 | Plus |
CG30438-PA | 1308 | CG30438-RA | 546..591 | 561..606 | 230 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:11:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30438-RE | 2226 | CG30438-RE | 371..962 | 16..606 | 2920 | 99.7 | Plus |
CG30438-RD | 2310 | CG30438-RD | 455..1046 | 16..606 | 2920 | 99.7 | Plus |
CG30438-RC | 2732 | CG30438-RC | 877..1468 | 16..606 | 2920 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:11:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 5547628..5547924 | 71..367 | 1485 | 100 | Plus |
2R | 25286936 | 2R | 5547987..5548227 | 367..606 | 1140 | 99.2 | Plus |
2R | 25286936 | 2R | 5267807..5268042 | 324..71 | 755 | 87.4 | Minus |
2R | 25286936 | 2R | 5539375..5539429 | 16..70 | 275 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 00:11:38 has no hits.
BO04547.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:05:38 Download gff for
BO04547.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30438-PD | 262..858 | 8..606 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:19:56 Download gff for
BO04547.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30438-PD | 262..858 | 8..606 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 20:31:00 Download gff for
BO04547.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30438-RC | 872..1468 | 8..606 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:41:13 Download gff for
BO04547.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30438-RC | 872..1468 | 8..606 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:41:13 Download gff for
BO04547.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 5547628..5547924 | 71..367 | 100 | -> | Plus |
2R | 5547988..5548227 | 368..606 | 99 | | Plus |
2R | 5539370..5539429 | 8..70 | 95 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 20:31:00 Download gff for
BO04547.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 1426875..1426934 | 8..70 | 95 | -> | Plus |
arm_2R | 1435133..1435429 | 71..367 | 100 | -> | Plus |
arm_2R | 1435493..1435732 | 368..606 | 99 | | Plus |
BO04547.3prime Sequence
582 bp (520 high quality bases) assembled on 2005-12-01
> BO04547.3prime
ATGGTCTAGAAAGCTTGCAATCTTCTTTGACTTCGTTTTTGCTATTGTAA
TAAAAGGAGCCATAAGGGAATAAAGACTCCGCACCTTCTCGTATGGAAAA
TCAATGCGCCTCAGTGCTAAGATCAGGACGTAAAGTAAAATTAAATAAAC
CGCAACTACGTCGAGTAAGTAGTATTGCCACCATGTCATATTTCGGGATG
GAGTCTGTAGATGATAAGCGCCATTATGTCGCAGCACATATTCGGTCCAG
TATATGGCAGTATCTAGCGCTGTTGAGCGCTGGTCCAGGAACAGCTTTTG
CCGATGTCGTGCTGAATTTCTGTAGCGAGGATTGTGAATCACTTTCATAA
TAGCCTTGTACAACTGATTGGCTGACAGCGTCTGAAGATCTAACTTTATT
GCATATCCATCGACCTCGGCCTTGGCTGAGTTAACATCGTGGTCGCAGAA
TACCGGCATTGTAACAACGGGTACTCCGTGATATACCGTCTCAAACATGC
TTAGCAAGCCTCCATGTGTTACAAACGCTCTAAGCTTGGGATGTCCCAAA
ATGTCCTGCTGCGGGAAACACCGTGAAAGTTT
BO04547.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:07:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30438-PA | 1308 | CG30438-RA | 742..1305 | 582..19 | 2770 | 99.6 | Minus |
CG30438-PB | 1575 | CG30438-RB | 1009..1572 | 582..19 | 2770 | 99.6 | Minus |
CG30438-PC | 1575 | CG30438-RC | 1009..1572 | 582..19 | 2770 | 99.6 | Minus |
CG30438-PD | 1575 | CG30438-RD | 1009..1572 | 582..19 | 2770 | 99.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 05:36:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30438-RE | 2226 | CG30438-RE | 1113..1676 | 582..19 | 2790 | 99.6 | Minus |
CG30438-RD | 2310 | CG30438-RD | 1197..1760 | 582..19 | 2790 | 99.6 | Minus |
CG30438-RC | 2732 | CG30438-RC | 1619..2182 | 582..19 | 2790 | 99.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 05:36:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 5548378..5548775 | 582..185 | 1960 | 99.5 | Minus |
2R | 25286936 | 2R | 5548828..5548993 | 184..19 | 830 | 100 | Minus |
2R | 25286936 | 2R | 5267417..5267660 | 330..582 | 720 | 86.6 | Plus |
Blast to na_te.dros performed on 2015-02-13 05:36:48 has no hits.
BO04547.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:05:37 Download gff for
BO04547.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30438-PD | 1009..1575 | 15..582 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:19:55 Download gff for
BO04547.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30438-PD | 1009..1575 | 15..582 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 17:54:29 Download gff for
BO04547.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30438-RC | 1619..2185 | 15..582 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:51:07 Download gff for
BO04547.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30438-RC | 1619..2185 | 15..582 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 07:51:07 Download gff for
BO04547.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 5548828..5548996 | 15..184 | 98 | | Minus |
2R | 5548378..5548775 | 185..582 | 99 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 17:54:29 Download gff for
BO04547.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 1435883..1436280 | 185..582 | 99 | -> | Minus |
arm_2R | 1436333..1436501 | 15..184 | 98 | | Minus |
BO04547.complete Sequence
1339 bp (1339 high quality bases) assembled on 2006-08-17
GenBank Submission: FJ629795
> BO04547.complete
GAAGTTATCAGTCGACATGGCGGGAGAAATGCCCATTAAGCCCTGGGACG
GACTGCGATACGCTTTCGAATCATGTGACGCAATGCTTCGTGACTCAGAA
ACAAAGGAGCTGACCAAGAAAAGCTTTGATTTGGCTATATTAGATGGAGC
TTTCCCAGAGTGCTTCTTGGGATTAATGTACGACTTCAAGATTCCATTTA
TGTACATAAACACGGTGGGATTCTACACAGGCAGTATCTCGACTGCAGGA
AATCCCGTTAGCTACGCTATTACTCCCAACTTCTATTCTCGATTTACGGA
CACAATGAATCTTTACGAACGTGCTATTAATACGGCCATGCAGATTGGAC
AAACACTGATGCACATGTATGTTATGCGTCGGACTCACCTTGTGATGCGA
GAGCACTTGGGTACTCAAATCCCGCATCCTTACGAAATGTCGCGCAACGT
GAGTTTCATTTTGCAAAATGGACACGCAGTTTTGTCTTATCCTAGAGCCT
TTAATCCGAATGTAGCAGAAGTGGCTTGCATTCATTGTAGGCCAGCTAGA
AAACTTCCTAGAAACCTTGAGGAATTCATCGGTGCTTCTGGAGCATCTGG
ATTTATTTACGTTTCTATGGGTTCCTCCGTAAAGGCCGCGAACATGCCAG
AGGCGTTGCGTCACATGCTTGTAAAGACCTTTGCACGTCTTCCCTATCAT
GTGCTATGGAAGTATGAAGGCAGTTCGACAGATATAAAAGACATCACATC
AAACGTAAAACTTTCACGGTGGTTACCGCAGCAGGACATTTTGGGACATC
CCAAGCTTAGAGCGTTTGTAACACATGGAGGCTTGCTAAGCATGTTTGAG
ACGGTATATCACGGAGTACCCGTTGTTACAATGCCGGTATTCTGCGACCA
CGATGTTAACTCAGCCAAGGCCGAGGTCGATGGATATGCAATAAAGTTAG
ATCTTCAGACGCTGTCAGCCAATCAGTTGTACAAGGCTATTATGAAAGTG
ATTCACAATCCTCGCTACAGAAATTCAGCACGACATCGGCAAAAGCTGTT
CCTGGACCAGCGCTCAACAGCGCTAGATACTGCCATATACTGGACCGAAT
ATGTGCTGCGACATAATGGCGCTTATCATCTACAGACTCCATCCCGAAAT
ATGACATGGTGGCAATACTACTTACTCGACGTAGTTGCGGTTTATTTAAT
TTTACTTTACGTCCTGATCTTAGCACTGAGGCGCATTGATTTTCCATACG
AGAAGGTGCGGAGTCTTTATTCCCTTATGGCTCCTTTTATTACAATAGCA
AAAACGAAGTCAAAGAAGATTGCAAGCTTTCTAGACCAT
BO04547.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:39:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30438-RE | 1575 | CG30438-PE | 267..1572 | 16..1321 | 6530 | 100 | Plus |
CG30438-RD | 1575 | CG30438-PD | 267..1572 | 16..1321 | 6530 | 100 | Plus |
CG30438-RC | 1575 | CG30438-PC | 267..1572 | 16..1321 | 6530 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:40:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30438-RE | 2226 | CG30438-RE | 371..1676 | 16..1321 | 6530 | 100 | Plus |
CG30438-RD | 2310 | CG30438-RD | 455..1760 | 16..1321 | 6530 | 100 | Plus |
CG30438-RC | 2732 | CG30438-RC | 877..2182 | 16..1321 | 6530 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:39:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 5547987..5548775 | 367..1155 | 3945 | 100 | Plus |
2R | 25286936 | 2R | 5547628..5547924 | 71..367 | 1485 | 100 | Plus |
2R | 25286936 | 2R | 5548828..5548993 | 1156..1321 | 830 | 100 | Plus |
2R | 25286936 | 2R | 5267417..5267669 | 1010..749 | 780 | 87.4 | Minus |
2R | 25286936 | 2R | 5267807..5268042 | 324..71 | 755 | 87.4 | Minus |
2R | 25286936 | 2R | 5539375..5539429 | 16..70 | 275 | 100 | Plus |
2R | 25286936 | 2R | 5267673..5267723 | 719..669 | 210 | 94.1 | Minus |
Blast to na_te.dros performed on 2014-11-27 07:39:58 has no hits.
BO04547.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:04:16 Download gff for
BO04547.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30438-RD | 262..1575 | 8..1325 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:23:22 Download gff for
BO04547.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30438-RC | 821..2134 | 8..1325 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:19:59 Download gff for
BO04547.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30438-RC | 878..2182 | 17..1323 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:04:17 Download gff for
BO04547.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30438-RC | 821..2134 | 8..1325 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:14:52 Download gff for
BO04547.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30438-RC | 878..2182 | 17..1323 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:14:52 Download gff for
BO04547.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 5548828..5548993 | 1156..1323 | 98 | | Plus |
2R | 5547628..5547924 | 71..367 | 100 | -> | Plus |
2R | 5539376..5539429 | 17..70 | 100 | -> | Plus |
2R | 5547988..5548775 | 368..1155 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:19:59 Download gff for
BO04547.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 1426881..1426934 | 17..70 | 100 | -> | Plus |
arm_2R | 1435133..1435429 | 71..367 | 100 | -> | Plus |
arm_2R | 1435493..1436280 | 368..1155 | 100 | -> | Plus |
arm_2R | 1436333..1436498 | 1156..1323 | 98 | | Plus |
BO04547.pep Sequence
Translation from 16 to 1339
> BO04547.pep
MAGEMPIKPWDGLRYAFESCDAMLRDSETKELTKKSFDLAILDGAFPECF
LGLMYDFKIPFMYINTVGFYTGSISTAGNPVSYAITPNFYSRFTDTMNLY
ERAINTAMQIGQTLMHMYVMRRTHLVMREHLGTQIPHPYEMSRNVSFILQ
NGHAVLSYPRAFNPNVAEVACIHCRPARKLPRNLEEFIGASGASGFIYVS
MGSSVKAANMPEALRHMLVKTFARLPYHVLWKYEGSSTDIKDITSNVKLS
RWLPQQDILGHPKLRAFVTHGGLLSMFETVYHGVPVVTMPVFCDHDVNSA
KAEVDGYAIKLDLQTLSANQLYKAIMKVIHNPRYRNSARHRQKLFLDQRS
TALDTAIYWTEYVLRHNGAYHLQTPSRNMTWWQYYLLDVVAVYLILLYVL
ILALRRIDFPYEKVRSLYSLMAPFITIAKTKSKKIASFLDH
BO04547.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:04:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30438-PE | 524 | CG30438-PE | 90..524 | 1..435 | 2292 | 100 | Plus |
CG30438-PD | 524 | CG30438-PD | 90..524 | 1..435 | 2292 | 100 | Plus |
CG30438-PC | 524 | CG30438-PC | 90..524 | 1..435 | 2292 | 100 | Plus |
CG30438-PB | 524 | CG30438-PB | 90..524 | 1..435 | 2292 | 100 | Plus |
CG30438-PA | 435 | CG30438-PA | 1..435 | 1..435 | 2292 | 100 | Plus |