Clone BO04547 Report

Search the DGRC for BO04547

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:45
Well:47
Vector:pDNR-Dual
Associated Gene/TranscriptCG30438-RA
Protein status:BO04547.pep: validated full length
Sequenced Size:1339

Clone Sequence Records

BO04547.5prime Sequence

606 bp (492 high quality bases) assembled on 2005-12-01

> BO04547.5prime
GAAGTTATCAGTCGACATGGCGGGAGAAATGCCCATTAAGCCCTGGGACG
GACTGCGATACGCTTTCGAATCATGTGACGCAATGCTTCGTGACTCAGAA
ACAAAGGAGCTGACCAAGAAAAGCTTTGATTTGGCTATATTAGATGGAGC
TTTCCCAGAGTGCTTCTTGGGATTAATGTACGACTTCAAGATTCCATTTA
TGTACATAAACACGGTGGGATTCTACACAGGCAGTATCTCGACTGCAGGA
AATCCCGTTAGCTACGCTATTACTCCCAACTTCTATTCTCGATTTACGGA
CACAATGAATCTTTACGAACGTGCTATTAATACGGCCATGCAGATTGGAC
AAACACTGATGCACATGTATGTTATGCGTCGGACTCACCTTGTGATGCGA
GAGCACTTGGGTACTCAAATCCCGCATCCTTACGAAATGTCGCGCAACGT
GAGTTTCATTTTGCAAAATGGACACGCAGTTTTGTCTTATCCTAGAGCCT
TTAATCCGAATGTAGCAGAAGTGGCTTGCTTTCATTGTAGGCCAGCTAGA
AAACTTCCTAAAACCTTGAGGAATTCATCGGTGCTTCTGGAGCATCTGGA
TTTATT

BO04547.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:07:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG30438-PB 1575 CG30438-RB 267..811 16..560 2700 99.8 Plus
CG30438-PC 1575 CG30438-RC 267..811 16..560 2700 99.8 Plus
CG30438-PD 1575 CG30438-RD 267..811 16..560 2700 99.8 Plus
CG30438-PA 1308 CG30438-RA 1..544 17..560 2695 99.8 Plus
CG30438-PB 1575 CG30438-RB 813..858 561..606 230 100 Plus
CG30438-PC 1575 CG30438-RC 813..858 561..606 230 100 Plus
CG30438-PD 1575 CG30438-RD 813..858 561..606 230 100 Plus
CG30438-PA 1308 CG30438-RA 546..591 561..606 230 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:11:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG30438-RE 2226 CG30438-RE 371..962 16..606 2920 99.7 Plus
CG30438-RD 2310 CG30438-RD 455..1046 16..606 2920 99.7 Plus
CG30438-RC 2732 CG30438-RC 877..1468 16..606 2920 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:11:34
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 5547628..5547924 71..367 1485 100 Plus
2R 25286936 2R 5547987..5548227 367..606 1140 99.2 Plus
2R 25286936 2R 5267807..5268042 324..71 755 87.4 Minus
2R 25286936 2R 5539375..5539429 16..70 275 100 Plus
Blast to na_te.dros performed on 2015-02-13 00:11:38 has no hits.

BO04547.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:05:38 Download gff for BO04547.5prime
Subject Subject Range Query Range Percent Splice Strand
CG30438-PD 262..858 8..606 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:19:56 Download gff for BO04547.5prime
Subject Subject Range Query Range Percent Splice Strand
CG30438-PD 262..858 8..606 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 20:31:00 Download gff for BO04547.5prime
Subject Subject Range Query Range Percent Splice Strand
CG30438-RC 872..1468 8..606 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:41:13 Download gff for BO04547.5prime
Subject Subject Range Query Range Percent Splice Strand
CG30438-RC 872..1468 8..606 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:41:13 Download gff for BO04547.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 5547628..5547924 71..367 100 -> Plus
2R 5547988..5548227 368..606 99   Plus
2R 5539370..5539429 8..70 95 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 20:31:00 Download gff for BO04547.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 1426875..1426934 8..70 95 -> Plus
arm_2R 1435133..1435429 71..367 100 -> Plus
arm_2R 1435493..1435732 368..606 99   Plus

BO04547.3prime Sequence

582 bp (520 high quality bases) assembled on 2005-12-01

> BO04547.3prime
ATGGTCTAGAAAGCTTGCAATCTTCTTTGACTTCGTTTTTGCTATTGTAA
TAAAAGGAGCCATAAGGGAATAAAGACTCCGCACCTTCTCGTATGGAAAA
TCAATGCGCCTCAGTGCTAAGATCAGGACGTAAAGTAAAATTAAATAAAC
CGCAACTACGTCGAGTAAGTAGTATTGCCACCATGTCATATTTCGGGATG
GAGTCTGTAGATGATAAGCGCCATTATGTCGCAGCACATATTCGGTCCAG
TATATGGCAGTATCTAGCGCTGTTGAGCGCTGGTCCAGGAACAGCTTTTG
CCGATGTCGTGCTGAATTTCTGTAGCGAGGATTGTGAATCACTTTCATAA
TAGCCTTGTACAACTGATTGGCTGACAGCGTCTGAAGATCTAACTTTATT
GCATATCCATCGACCTCGGCCTTGGCTGAGTTAACATCGTGGTCGCAGAA
TACCGGCATTGTAACAACGGGTACTCCGTGATATACCGTCTCAAACATGC
TTAGCAAGCCTCCATGTGTTACAAACGCTCTAAGCTTGGGATGTCCCAAA
ATGTCCTGCTGCGGGAAACACCGTGAAAGTTT

BO04547.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:07:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG30438-PA 1308 CG30438-RA 742..1305 582..19 2770 99.6 Minus
CG30438-PB 1575 CG30438-RB 1009..1572 582..19 2770 99.6 Minus
CG30438-PC 1575 CG30438-RC 1009..1572 582..19 2770 99.6 Minus
CG30438-PD 1575 CG30438-RD 1009..1572 582..19 2770 99.6 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 05:36:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG30438-RE 2226 CG30438-RE 1113..1676 582..19 2790 99.6 Minus
CG30438-RD 2310 CG30438-RD 1197..1760 582..19 2790 99.6 Minus
CG30438-RC 2732 CG30438-RC 1619..2182 582..19 2790 99.6 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 05:36:47
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 5548378..5548775 582..185 1960 99.5 Minus
2R 25286936 2R 5548828..5548993 184..19 830 100 Minus
2R 25286936 2R 5267417..5267660 330..582 720 86.6 Plus
Blast to na_te.dros performed on 2015-02-13 05:36:48 has no hits.

BO04547.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:05:37 Download gff for BO04547.3prime
Subject Subject Range Query Range Percent Splice Strand
CG30438-PD 1009..1575 15..582 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:19:55 Download gff for BO04547.3prime
Subject Subject Range Query Range Percent Splice Strand
CG30438-PD 1009..1575 15..582 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 17:54:29 Download gff for BO04547.3prime
Subject Subject Range Query Range Percent Splice Strand
CG30438-RC 1619..2185 15..582 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:51:07 Download gff for BO04547.3prime
Subject Subject Range Query Range Percent Splice Strand
CG30438-RC 1619..2185 15..582 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 07:51:07 Download gff for BO04547.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 5548828..5548996 15..184 98   Minus
2R 5548378..5548775 185..582 99 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 17:54:29 Download gff for BO04547.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 1435883..1436280 185..582 99 -> Minus
arm_2R 1436333..1436501 15..184 98   Minus

BO04547.complete Sequence

1339 bp (1339 high quality bases) assembled on 2006-08-17

GenBank Submission: FJ629795

> BO04547.complete
GAAGTTATCAGTCGACATGGCGGGAGAAATGCCCATTAAGCCCTGGGACG
GACTGCGATACGCTTTCGAATCATGTGACGCAATGCTTCGTGACTCAGAA
ACAAAGGAGCTGACCAAGAAAAGCTTTGATTTGGCTATATTAGATGGAGC
TTTCCCAGAGTGCTTCTTGGGATTAATGTACGACTTCAAGATTCCATTTA
TGTACATAAACACGGTGGGATTCTACACAGGCAGTATCTCGACTGCAGGA
AATCCCGTTAGCTACGCTATTACTCCCAACTTCTATTCTCGATTTACGGA
CACAATGAATCTTTACGAACGTGCTATTAATACGGCCATGCAGATTGGAC
AAACACTGATGCACATGTATGTTATGCGTCGGACTCACCTTGTGATGCGA
GAGCACTTGGGTACTCAAATCCCGCATCCTTACGAAATGTCGCGCAACGT
GAGTTTCATTTTGCAAAATGGACACGCAGTTTTGTCTTATCCTAGAGCCT
TTAATCCGAATGTAGCAGAAGTGGCTTGCATTCATTGTAGGCCAGCTAGA
AAACTTCCTAGAAACCTTGAGGAATTCATCGGTGCTTCTGGAGCATCTGG
ATTTATTTACGTTTCTATGGGTTCCTCCGTAAAGGCCGCGAACATGCCAG
AGGCGTTGCGTCACATGCTTGTAAAGACCTTTGCACGTCTTCCCTATCAT
GTGCTATGGAAGTATGAAGGCAGTTCGACAGATATAAAAGACATCACATC
AAACGTAAAACTTTCACGGTGGTTACCGCAGCAGGACATTTTGGGACATC
CCAAGCTTAGAGCGTTTGTAACACATGGAGGCTTGCTAAGCATGTTTGAG
ACGGTATATCACGGAGTACCCGTTGTTACAATGCCGGTATTCTGCGACCA
CGATGTTAACTCAGCCAAGGCCGAGGTCGATGGATATGCAATAAAGTTAG
ATCTTCAGACGCTGTCAGCCAATCAGTTGTACAAGGCTATTATGAAAGTG
ATTCACAATCCTCGCTACAGAAATTCAGCACGACATCGGCAAAAGCTGTT
CCTGGACCAGCGCTCAACAGCGCTAGATACTGCCATATACTGGACCGAAT
ATGTGCTGCGACATAATGGCGCTTATCATCTACAGACTCCATCCCGAAAT
ATGACATGGTGGCAATACTACTTACTCGACGTAGTTGCGGTTTATTTAAT
TTTACTTTACGTCCTGATCTTAGCACTGAGGCGCATTGATTTTCCATACG
AGAAGGTGCGGAGTCTTTATTCCCTTATGGCTCCTTTTATTACAATAGCA
AAAACGAAGTCAAAGAAGATTGCAAGCTTTCTAGACCAT

BO04547.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:39:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG30438-RE 1575 CG30438-PE 267..1572 16..1321 6530 100 Plus
CG30438-RD 1575 CG30438-PD 267..1572 16..1321 6530 100 Plus
CG30438-RC 1575 CG30438-PC 267..1572 16..1321 6530 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:40:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG30438-RE 2226 CG30438-RE 371..1676 16..1321 6530 100 Plus
CG30438-RD 2310 CG30438-RD 455..1760 16..1321 6530 100 Plus
CG30438-RC 2732 CG30438-RC 877..2182 16..1321 6530 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:39:57
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 5547987..5548775 367..1155 3945 100 Plus
2R 25286936 2R 5547628..5547924 71..367 1485 100 Plus
2R 25286936 2R 5548828..5548993 1156..1321 830 100 Plus
2R 25286936 2R 5267417..5267669 1010..749 780 87.4 Minus
2R 25286936 2R 5267807..5268042 324..71 755 87.4 Minus
2R 25286936 2R 5539375..5539429 16..70 275 100 Plus
2R 25286936 2R 5267673..5267723 719..669 210 94.1 Minus
Blast to na_te.dros performed on 2014-11-27 07:39:58 has no hits.

BO04547.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:04:16 Download gff for BO04547.complete
Subject Subject Range Query Range Percent Splice Strand
CG30438-RD 262..1575 8..1325 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:23:22 Download gff for BO04547.complete
Subject Subject Range Query Range Percent Splice Strand
CG30438-RC 821..2134 8..1325 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:19:59 Download gff for BO04547.complete
Subject Subject Range Query Range Percent Splice Strand
CG30438-RC 878..2182 17..1323 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:04:17 Download gff for BO04547.complete
Subject Subject Range Query Range Percent Splice Strand
CG30438-RC 821..2134 8..1325 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:14:52 Download gff for BO04547.complete
Subject Subject Range Query Range Percent Splice Strand
CG30438-RC 878..2182 17..1323 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:14:52 Download gff for BO04547.complete
Subject Subject Range Query Range Percent Splice Strand
2R 5548828..5548993 1156..1323 98   Plus
2R 5547628..5547924 71..367 100 -> Plus
2R 5539376..5539429 17..70 100 -> Plus
2R 5547988..5548775 368..1155 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:19:59 Download gff for BO04547.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 1426881..1426934 17..70 100 -> Plus
arm_2R 1435133..1435429 71..367 100 -> Plus
arm_2R 1435493..1436280 368..1155 100 -> Plus
arm_2R 1436333..1436498 1156..1323 98   Plus

BO04547.pep Sequence

Translation from 16 to 1339

> BO04547.pep
MAGEMPIKPWDGLRYAFESCDAMLRDSETKELTKKSFDLAILDGAFPECF
LGLMYDFKIPFMYINTVGFYTGSISTAGNPVSYAITPNFYSRFTDTMNLY
ERAINTAMQIGQTLMHMYVMRRTHLVMREHLGTQIPHPYEMSRNVSFILQ
NGHAVLSYPRAFNPNVAEVACIHCRPARKLPRNLEEFIGASGASGFIYVS
MGSSVKAANMPEALRHMLVKTFARLPYHVLWKYEGSSTDIKDITSNVKLS
RWLPQQDILGHPKLRAFVTHGGLLSMFETVYHGVPVVTMPVFCDHDVNSA
KAEVDGYAIKLDLQTLSANQLYKAIMKVIHNPRYRNSARHRQKLFLDQRS
TALDTAIYWTEYVLRHNGAYHLQTPSRNMTWWQYYLLDVVAVYLILLYVL
ILALRRIDFPYEKVRSLYSLMAPFITIAKTKSKKIASFLDH

BO04547.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:04:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG30438-PE 524 CG30438-PE 90..524 1..435 2292 100 Plus
CG30438-PD 524 CG30438-PD 90..524 1..435 2292 100 Plus
CG30438-PC 524 CG30438-PC 90..524 1..435 2292 100 Plus
CG30438-PB 524 CG30438-PB 90..524 1..435 2292 100 Plus
CG30438-PA 435 CG30438-PA 1..435 1..435 2292 100 Plus