Clone BO04555 Report

Search the DGRC for BO04555

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:45
Well:55
Vector:pDNR-Dual
Associated Gene/TranscriptScpX-RA
Protein status:BO04555.pep: Imported from assembly
Sequenced Size:1666

Clone Sequence Records

BO04555.3prime Sequence

432 bp (370 high quality bases) assembled on 2005-12-01

> BO04555.3prime
ATGGTCTAGAAAGCTTGCTAGCTTGGAGCGCAGCTCCTCGATCCTGCCTT
GGGCGGATCGCTGCAGGTCCATCAGTTTCATGGCAAAGCCCATGTTGCCC
TGGATCTTGATCTTGCCCTGGAAAAAGGCCTTCTGTGGTGGCAGCTTTCC
TGTTAGCAGCTCAAAGACATCATCGTCGCTAATGATAAAGGTAACGTCAC
ATTTTTGTGTTCCATTGAAGATGATCTTTCCCTTGCCCTGCTTGGCATCA
ATTACCCAGAAACCGGTCTGTCCATTGGGTCCGTTGTTGACCTTAAAGCC
GTAAATGGCGCGCACCTTTTCGATCAGATTGTCCTTATCCTCCTGCATGG
CCTGCTCCAATAGTTTCAGCAGGGGCGCAACCTTAAAGCCATCCTCACTG
GTAACAACCTTGCCCGCACCGGTCAAATTGCG

BO04555.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:07:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG17320-PA 1635 ScpX-RA 1219..1632 432..19 1970 99 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:35:53
Subject Length Description Subject Range Query Range Score Percent Strand
ScpX-RA 1883 CG17320-RA 1332..1745 432..19 2010 99 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:35:50
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 18833019..18833244 432..207 1070 98.2 Minus
2L 23513712 2L 18833305..18833492 206..19 940 100 Minus
Blast to na_te.dros performed on 2015-02-11 15:35:52 has no hits.

BO04555.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:05:54 Download gff for BO04555.3prime
Subject Subject Range Query Range Percent Splice Strand
ScpX-PA 1219..1635 18..432 98   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:20:17 Download gff for BO04555.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17320-PA 1219..1635 18..432 98   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:33:49 Download gff for BO04555.3prime
Subject Subject Range Query Range Percent Splice Strand
ScpX-RA 1332..1754 8..432 97   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:29:45 Download gff for BO04555.3prime
Subject Subject Range Query Range Percent Splice Strand
ScpX-RA 1332..1754 8..432 97   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:29:45 Download gff for BO04555.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 18833019..18833244 207..432 98 -> Minus
2L 18833305..18833501 8..206 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:33:49 Download gff for BO04555.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 18833019..18833244 207..432 98 -> Minus
arm_2L 18833305..18833501 8..206 97   Minus

BO04555.5prime Sequence

423 bp (396 high quality bases) assembled on 2005-12-01

> BO04555.5prime
GAAGTTATCAGTCGACATGTCGAAGACCCGTGTGTACGTTGTCGGTGTGG
GCATGACCAAGTTCGAGAAGCCCGGTCGCCAAGCTGATGTGTGCTACCCG
GATTTCGCTAGGGAGGCCATCACAAAAGCTCTCCAGGATGCGGGCATCAA
GTACGAGGAAGTGCAGCAGGCGGTGGCCGGCTACGTTTATGGAGACTCCA
CCTGCGGACAGCGGGCCATCTACGAGGTCGGAATGACCGGCATTCCGGTC
TATAACGTCAACAACAACTGCTCCACGGGATCCAGTGCTTTGTATTTGGC
CAAGCAGATCGTGGAGAGCGGAAACGCAGATTGCGTCCTGGCTTTGGGAT
TTGAAAAGATGGAGCGTGGATCCCCTGTCCTCCAAGTACTTTGATCGCGC
CAATCCCATGGAGCGTCACATCA

BO04555.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:07:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG17320-PA 1635 ScpX-RA 1..358 17..374 1790 100 Plus
CG17597-PA 1224 CG17597-RA 100..356 116..372 960 94.9 Plus
CG17320-PA 1635 ScpX-RA 356..406 373..423 255 100 Plus
CG17597-PA 1224 CG17597-RA 34..92 50..108 170 91.5 Plus
CG17597-PA 1224 CG17597-RA 367..406 384..423 150 95 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:07:52
Subject Length Description Subject Range Query Range Score Percent Strand
ScpX-RA 1883 CG17320-RA 114..519 17..423 2010 99.8 Plus
CG17597-RB 1758 CG17597-RB 480..879 23..423 1470 91.3 Plus
CG17597-RA 1354 CG17597-RA 76..475 23..423 1470 91.3 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:07:50
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 18831721..18832046 60..386 1585 99.7 Plus
2L 23513712 2L 18830150..18830462 372..60 1235 93 Minus
2L 23513712 2L 18831342..18831386 17..61 225 100 Plus
2L 23513712 2L 18832104..18832142 385..423 195 100 Plus
Blast to na_te.dros performed on 2015-02-12 10:07:51 has no hits.

BO04555.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:05:55 Download gff for BO04555.5prime
Subject Subject Range Query Range Percent Splice Strand
ScpX-PA 1..405 17..422 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:20:19 Download gff for BO04555.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17320-PA 1..405 17..422 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:53:07 Download gff for BO04555.5prime
Subject Subject Range Query Range Percent Splice Strand
ScpX-RA 114..518 17..422 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:06:12 Download gff for BO04555.5prime
Subject Subject Range Query Range Percent Splice Strand
ScpX-RA 114..518 17..422 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:06:12 Download gff for BO04555.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 18831342..18831386 17..61 100 -> Plus
2L 18831723..18832046 62..386 99 -> Plus
2L 18832106..18832141 387..422 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:53:07 Download gff for BO04555.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 18831342..18831386 17..61 100 -> Plus
arm_2L 18831723..18832046 62..386 99 -> Plus
arm_2L 18832106..18832141 387..422 100   Plus

BO04555.complete Sequence

1666 bp assembled on 2008-11-10

GenBank Submission: KX794894

> BO04555.complete
GAAGTTATCAGTCGACATGTCGAAGACCCGTGTGTACGTTGTCGGTGTGG
GCATGACCAAGTTCGAGAAGCCCGGTCGCCAAGCTGATGTGTGCTACCCG
GATTTCGCTAGGGAGGCCATCACAAAAGCTCTCCAGGATGCGGGCATCAA
GTACGAGGAAGTGCAGCAGGCGGTGGCCGGCTACGTTTATGGAGACTCCA
CCTGCGGACAGCGGGCCATCTACGAGGTCGGAATGACCGGCATTCCGGTC
TATAACGTCAACAACAACTGCTCCACGGGATCCAGTGCTTTGTATTTGGC
CAAGCAGATCGTGGAGAGCGGAAACGCAGATTGCGTCCTGGCTTTGGGAT
TTGAAAAGATGGAGCGTGGATCCCTGTCCTCCAAGTACTTTGATCGCGCC
AATCCCATGGAGCGTCACATCACCGAGATGGGTGAGCTGGCCGAGATCGG
AGCTGGCCCAATGGCTGCCCAGATCTTCGGCAATGCCGGCAAAGAGCACA
TGAAGAAGTATGGCACTAAGCCCGAGCATTTCGGCAAGATCGCTTGGAAG
AACCACAAGCACTCCGTCAATAATCCCTACTCGCAGTTCCGCGATGAATA
CACCCTGGAGCAGATTATGAAGTCGCCCCAGGTTGTGGAGGGAGTGCTGA
CCAAGCTGCAGTGTTGTCCCACTTCCGATGGATCTGGAGCTGCCATTCTC
GCCTCCGAGGCCTTCGTGCGTCGCCACGGATTGGAAAAGCAGGCTGTCGA
AATTGTAGGCATGGAGATGGCCAGTGACCCGGCGTCCACCTTTGCCGACA
AGAGCTTGATGAAGATTGCTGGAACCGATATGACCCGTCTGGCCACCCAG
CGTCTGTTCGCAAAGAGTGGGTACAAGCCCCAGGATGTCCAGGTTGTGGA
ACTGCACGATTGCTTCTCGGCCAACGAGTTGATCACGTATGAGGCACTTG
GACTGTGTGGAGAGGGCAACGCCGGCGAGTTCATCGACGCTGGAGACAAC
ACCTACGGTGGCAAGTTCGTGGTCAACCCCAGTGGTGGTCTGATCTCGAA
GGGCCATCCTCTGGGCGCCACGGGTCTGGCACAATGTGCTGAGCTCTGCT
GGCAGCTCCGTGGATTGGCTGAGAAGCGCCAGGTGCCCAATGCTCAGTTG
GCTTTGCAGCACAATCTGGGACTGGGTGGTGCCGTTGTGGTTGCCTTGTA
TCGTCTGGGTTTCCCAGCTGCCAACAGCGTGGTTCGCAATCTGACCGCTG
CGGGCAAGGCTGCTACCAGTGAGGATGGCTTTAAGGTTGCGCCCCTGCTG
AAACTATTGGAGCAGGCCATGCAGGAGGATAAGGACAATCTGATCGAAAA
GGTGCGCGCCATTTACGGCTTTAAGGTCAACAACGGACCCAATGGACAGA
CCGGTTTCTGGGTAATTGATGCCAAGCAGGGCAAGGGAAAGATCATCTTC
AATGGAACACAAAAATGTGACGTTACCTTTATCATTAGCGACGATGATGT
CTTTGAGCTGCTAACAGGAAAGCTGCCACCACAGAAGGCCTTTTTCCAGG
GCAAGATCAAGATCCAGGGCAACATGGGCTTTGCCATGAAACTGATGGAC
CTGCAGCGATCCGCCCAAGGCAGGATCGAGGAGCTGCGCTCCAAGCTAGC
AAGCTTTCTAGACCAT

BO04555.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:45:31
Subject Length Description Subject Range Query Range Score Percent Strand
ScpX-RA 1635 CG17320-PA 1..1632 17..1648 8145 99.9 Plus
CG17597-RB 1224 CG17597-PB 7..1199 23..1215 5215 95.8 Plus
CG17597-RA 1224 CG17597-PA 7..1199 23..1215 5215 95.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:45:33
Subject Length Description Subject Range Query Range Score Percent Strand
ScpX-RA 1883 CG17320-RA 114..1745 17..1648 8145 99.9 Plus
CG17597-RB 1758 CG17597-RB 480..1672 23..1215 5215 95.8 Plus
CG17597-RA 1354 CG17597-RA 76..1268 23..1215 5215 95.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:45:29
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 18832361..18833244 577..1460 4420 100 Plus
2L 23513712 2L 18829098..18829736 1215..577 3045 98.4 Minus
2L 23513712 2L 18831721..18832046 60..385 1630 100 Plus
2L 23513712 2L 18830143..18830462 379..60 1240 92.5 Minus
2L 23513712 2L 18832104..18832296 384..576 950 99.5 Plus
2L 23513712 2L 18833305..18833492 1461..1648 940 100 Plus
2L 23513712 2L 18829887..18830079 576..384 845 95.9 Minus
2L 23513712 2L 18831342..18831386 17..61 225 100 Plus
Blast to na_te.dros performed on 2014-11-27 07:45:30 has no hits.

BO04555.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:48:55 Download gff for BO04555.complete
Subject Subject Range Query Range Percent Splice Strand
ScpX-RA 158..1798 17..1659 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:26:08 Download gff for BO04555.complete
Subject Subject Range Query Range Percent Splice Strand
ScpX-RA 114..1745 17..1650 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 10:58:47 Download gff for BO04555.complete
Subject Subject Range Query Range Percent Splice Strand
ScpX-RA 127..1758 17..1650 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:04:07 Download gff for BO04555.complete
Subject Subject Range Query Range Percent Splice Strand
ScpX-RA 114..1745 17..1650 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:04:07 Download gff for BO04555.complete
Subject Subject Range Query Range Percent Splice Strand
2L 18831342..18831386 17..61 100 -> Plus
2L 18831723..18832046 62..385 100 -> Plus
2L 18832106..18832296 386..576 99 -> Plus
2L 18832361..18833244 577..1460 100 -> Plus
2L 18833305..18833492 1461..1650 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:26:08 Download gff for BO04555.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 18831342..18831386 17..61 100 -> Plus
arm_2L 18831723..18832046 62..385 100 -> Plus
arm_2L 18832106..18832296 386..576 99 -> Plus
arm_2L 18832361..18833244 577..1460 100 -> Plus
arm_2L 18833305..18833492 1461..1650 98   Plus

BO04555.pep Sequence

Translation from 16 to 1666

> BO04555.pep
MSKTRVYVVGVGMTKFEKPGRQADVCYPDFAREAITKALQDAGIKYEEVQ
QAVAGYVYGDSTCGQRAIYEVGMTGIPVYNVNNNCSTGSSALYLAKQIVE
SGNADCVLALGFEKMERGSLSSKYFDRANPMERHITEMGELAEIGAGPMA
AQIFGNAGKEHMKKYGTKPEHFGKIAWKNHKHSVNNPYSQFRDEYTLEQI
MKSPQVVEGVLTKLQCCPTSDGSGAAILASEAFVRRHGLEKQAVEIVGME
MASDPASTFADKSLMKIAGTDMTRLATQRLFAKSGYKPQDVQVVELHDCF
SANELITYEALGLCGEGNAGEFIDAGDNTYGGKFVVNPSGGLISKGHPLG
ATGLAQCAELCWQLRGLAEKRQVPNAQLALQHNLGLGGAVVVALYRLGFP
AANSVVRNLTAAGKAATSEDGFKVAPLLKLLEQAMQEDKDNLIEKVRAIY
GFKVNNGPNGQTGFWVIDAKQGKGKIIFNGTQKCDVTFIISDDDVFELLT
GKLPPQKAFFQGKIKIQGNMGFAMKLMDLQRSAQGRIEELRSKLASFLDH

BO04555.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:28:21
Subject Length Description Subject Range Query Range Score Percent Strand
ScpX-PA 544 CG17320-PA 1..544 1..544 2821 100 Plus
CG17597-PB 407 CG17597-PB 1..402 1..402 2046 96.5 Plus
CG17597-PA 407 CG17597-PA 1..402 1..402 2046 96.5 Plus