Clone Sequence Records
BO04555.3prime Sequence
432 bp (370 high quality bases) assembled on 2005-12-01
> BO04555.3prime
ATGGTCTAGAAAGCTTGCTAGCTTGGAGCGCAGCTCCTCGATCCTGCCTT
GGGCGGATCGCTGCAGGTCCATCAGTTTCATGGCAAAGCCCATGTTGCCC
TGGATCTTGATCTTGCCCTGGAAAAAGGCCTTCTGTGGTGGCAGCTTTCC
TGTTAGCAGCTCAAAGACATCATCGTCGCTAATGATAAAGGTAACGTCAC
ATTTTTGTGTTCCATTGAAGATGATCTTTCCCTTGCCCTGCTTGGCATCA
ATTACCCAGAAACCGGTCTGTCCATTGGGTCCGTTGTTGACCTTAAAGCC
GTAAATGGCGCGCACCTTTTCGATCAGATTGTCCTTATCCTCCTGCATGG
CCTGCTCCAATAGTTTCAGCAGGGGCGCAACCTTAAAGCCATCCTCACTG
GTAACAACCTTGCCCGCACCGGTCAAATTGCG
BO04555.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:07:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17320-PA | 1635 | ScpX-RA | 1219..1632 | 432..19 | 1970 | 99 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:35:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ScpX-RA | 1883 | CG17320-RA | 1332..1745 | 432..19 | 2010 | 99 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:35:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 18833019..18833244 | 432..207 | 1070 | 98.2 | Minus |
2L | 23513712 | 2L | 18833305..18833492 | 206..19 | 940 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 15:35:52 has no hits.
BO04555.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:05:54 Download gff for
BO04555.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ScpX-PA | 1219..1635 | 18..432 | 98 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:20:17 Download gff for
BO04555.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17320-PA | 1219..1635 | 18..432 | 98 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:33:49 Download gff for
BO04555.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ScpX-RA | 1332..1754 | 8..432 | 97 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:29:45 Download gff for
BO04555.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ScpX-RA | 1332..1754 | 8..432 | 97 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:29:45 Download gff for
BO04555.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 18833019..18833244 | 207..432 | 98 | -> | Minus |
2L | 18833305..18833501 | 8..206 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:33:49 Download gff for
BO04555.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 18833019..18833244 | 207..432 | 98 | -> | Minus |
arm_2L | 18833305..18833501 | 8..206 | 97 | | Minus |
BO04555.5prime Sequence
423 bp (396 high quality bases) assembled on 2005-12-01
> BO04555.5prime
GAAGTTATCAGTCGACATGTCGAAGACCCGTGTGTACGTTGTCGGTGTGG
GCATGACCAAGTTCGAGAAGCCCGGTCGCCAAGCTGATGTGTGCTACCCG
GATTTCGCTAGGGAGGCCATCACAAAAGCTCTCCAGGATGCGGGCATCAA
GTACGAGGAAGTGCAGCAGGCGGTGGCCGGCTACGTTTATGGAGACTCCA
CCTGCGGACAGCGGGCCATCTACGAGGTCGGAATGACCGGCATTCCGGTC
TATAACGTCAACAACAACTGCTCCACGGGATCCAGTGCTTTGTATTTGGC
CAAGCAGATCGTGGAGAGCGGAAACGCAGATTGCGTCCTGGCTTTGGGAT
TTGAAAAGATGGAGCGTGGATCCCCTGTCCTCCAAGTACTTTGATCGCGC
CAATCCCATGGAGCGTCACATCA
BO04555.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:07:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17320-PA | 1635 | ScpX-RA | 1..358 | 17..374 | 1790 | 100 | Plus |
CG17597-PA | 1224 | CG17597-RA | 100..356 | 116..372 | 960 | 94.9 | Plus |
CG17320-PA | 1635 | ScpX-RA | 356..406 | 373..423 | 255 | 100 | Plus |
CG17597-PA | 1224 | CG17597-RA | 34..92 | 50..108 | 170 | 91.5 | Plus |
CG17597-PA | 1224 | CG17597-RA | 367..406 | 384..423 | 150 | 95 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:07:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ScpX-RA | 1883 | CG17320-RA | 114..519 | 17..423 | 2010 | 99.8 | Plus |
CG17597-RB | 1758 | CG17597-RB | 480..879 | 23..423 | 1470 | 91.3 | Plus |
CG17597-RA | 1354 | CG17597-RA | 76..475 | 23..423 | 1470 | 91.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:07:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 18831721..18832046 | 60..386 | 1585 | 99.7 | Plus |
2L | 23513712 | 2L | 18830150..18830462 | 372..60 | 1235 | 93 | Minus |
2L | 23513712 | 2L | 18831342..18831386 | 17..61 | 225 | 100 | Plus |
2L | 23513712 | 2L | 18832104..18832142 | 385..423 | 195 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 10:07:51 has no hits.
BO04555.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:05:55 Download gff for
BO04555.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ScpX-PA | 1..405 | 17..422 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:20:19 Download gff for
BO04555.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17320-PA | 1..405 | 17..422 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:53:07 Download gff for
BO04555.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ScpX-RA | 114..518 | 17..422 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:06:12 Download gff for
BO04555.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ScpX-RA | 114..518 | 17..422 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:06:12 Download gff for
BO04555.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 18831342..18831386 | 17..61 | 100 | -> | Plus |
2L | 18831723..18832046 | 62..386 | 99 | -> | Plus |
2L | 18832106..18832141 | 387..422 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:53:07 Download gff for
BO04555.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 18831342..18831386 | 17..61 | 100 | -> | Plus |
arm_2L | 18831723..18832046 | 62..386 | 99 | -> | Plus |
arm_2L | 18832106..18832141 | 387..422 | 100 | | Plus |
BO04555.complete Sequence
1666 bp assembled on 2008-11-10
GenBank Submission: KX794894
> BO04555.complete
GAAGTTATCAGTCGACATGTCGAAGACCCGTGTGTACGTTGTCGGTGTGG
GCATGACCAAGTTCGAGAAGCCCGGTCGCCAAGCTGATGTGTGCTACCCG
GATTTCGCTAGGGAGGCCATCACAAAAGCTCTCCAGGATGCGGGCATCAA
GTACGAGGAAGTGCAGCAGGCGGTGGCCGGCTACGTTTATGGAGACTCCA
CCTGCGGACAGCGGGCCATCTACGAGGTCGGAATGACCGGCATTCCGGTC
TATAACGTCAACAACAACTGCTCCACGGGATCCAGTGCTTTGTATTTGGC
CAAGCAGATCGTGGAGAGCGGAAACGCAGATTGCGTCCTGGCTTTGGGAT
TTGAAAAGATGGAGCGTGGATCCCTGTCCTCCAAGTACTTTGATCGCGCC
AATCCCATGGAGCGTCACATCACCGAGATGGGTGAGCTGGCCGAGATCGG
AGCTGGCCCAATGGCTGCCCAGATCTTCGGCAATGCCGGCAAAGAGCACA
TGAAGAAGTATGGCACTAAGCCCGAGCATTTCGGCAAGATCGCTTGGAAG
AACCACAAGCACTCCGTCAATAATCCCTACTCGCAGTTCCGCGATGAATA
CACCCTGGAGCAGATTATGAAGTCGCCCCAGGTTGTGGAGGGAGTGCTGA
CCAAGCTGCAGTGTTGTCCCACTTCCGATGGATCTGGAGCTGCCATTCTC
GCCTCCGAGGCCTTCGTGCGTCGCCACGGATTGGAAAAGCAGGCTGTCGA
AATTGTAGGCATGGAGATGGCCAGTGACCCGGCGTCCACCTTTGCCGACA
AGAGCTTGATGAAGATTGCTGGAACCGATATGACCCGTCTGGCCACCCAG
CGTCTGTTCGCAAAGAGTGGGTACAAGCCCCAGGATGTCCAGGTTGTGGA
ACTGCACGATTGCTTCTCGGCCAACGAGTTGATCACGTATGAGGCACTTG
GACTGTGTGGAGAGGGCAACGCCGGCGAGTTCATCGACGCTGGAGACAAC
ACCTACGGTGGCAAGTTCGTGGTCAACCCCAGTGGTGGTCTGATCTCGAA
GGGCCATCCTCTGGGCGCCACGGGTCTGGCACAATGTGCTGAGCTCTGCT
GGCAGCTCCGTGGATTGGCTGAGAAGCGCCAGGTGCCCAATGCTCAGTTG
GCTTTGCAGCACAATCTGGGACTGGGTGGTGCCGTTGTGGTTGCCTTGTA
TCGTCTGGGTTTCCCAGCTGCCAACAGCGTGGTTCGCAATCTGACCGCTG
CGGGCAAGGCTGCTACCAGTGAGGATGGCTTTAAGGTTGCGCCCCTGCTG
AAACTATTGGAGCAGGCCATGCAGGAGGATAAGGACAATCTGATCGAAAA
GGTGCGCGCCATTTACGGCTTTAAGGTCAACAACGGACCCAATGGACAGA
CCGGTTTCTGGGTAATTGATGCCAAGCAGGGCAAGGGAAAGATCATCTTC
AATGGAACACAAAAATGTGACGTTACCTTTATCATTAGCGACGATGATGT
CTTTGAGCTGCTAACAGGAAAGCTGCCACCACAGAAGGCCTTTTTCCAGG
GCAAGATCAAGATCCAGGGCAACATGGGCTTTGCCATGAAACTGATGGAC
CTGCAGCGATCCGCCCAAGGCAGGATCGAGGAGCTGCGCTCCAAGCTAGC
AAGCTTTCTAGACCAT
BO04555.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:45:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ScpX-RA | 1635 | CG17320-PA | 1..1632 | 17..1648 | 8145 | 99.9 | Plus |
CG17597-RB | 1224 | CG17597-PB | 7..1199 | 23..1215 | 5215 | 95.8 | Plus |
CG17597-RA | 1224 | CG17597-PA | 7..1199 | 23..1215 | 5215 | 95.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:45:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ScpX-RA | 1883 | CG17320-RA | 114..1745 | 17..1648 | 8145 | 99.9 | Plus |
CG17597-RB | 1758 | CG17597-RB | 480..1672 | 23..1215 | 5215 | 95.8 | Plus |
CG17597-RA | 1354 | CG17597-RA | 76..1268 | 23..1215 | 5215 | 95.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:45:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 18832361..18833244 | 577..1460 | 4420 | 100 | Plus |
2L | 23513712 | 2L | 18829098..18829736 | 1215..577 | 3045 | 98.4 | Minus |
2L | 23513712 | 2L | 18831721..18832046 | 60..385 | 1630 | 100 | Plus |
2L | 23513712 | 2L | 18830143..18830462 | 379..60 | 1240 | 92.5 | Minus |
2L | 23513712 | 2L | 18832104..18832296 | 384..576 | 950 | 99.5 | Plus |
2L | 23513712 | 2L | 18833305..18833492 | 1461..1648 | 940 | 100 | Plus |
2L | 23513712 | 2L | 18829887..18830079 | 576..384 | 845 | 95.9 | Minus |
2L | 23513712 | 2L | 18831342..18831386 | 17..61 | 225 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 07:45:30 has no hits.
BO04555.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:48:55 Download gff for
BO04555.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ScpX-RA | 158..1798 | 17..1659 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:26:08 Download gff for
BO04555.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ScpX-RA | 114..1745 | 17..1650 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 10:58:47 Download gff for
BO04555.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ScpX-RA | 127..1758 | 17..1650 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:04:07 Download gff for
BO04555.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ScpX-RA | 114..1745 | 17..1650 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:04:07 Download gff for
BO04555.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 18831342..18831386 | 17..61 | 100 | -> | Plus |
2L | 18831723..18832046 | 62..385 | 100 | -> | Plus |
2L | 18832106..18832296 | 386..576 | 99 | -> | Plus |
2L | 18832361..18833244 | 577..1460 | 100 | -> | Plus |
2L | 18833305..18833492 | 1461..1650 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:26:08 Download gff for
BO04555.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 18831342..18831386 | 17..61 | 100 | -> | Plus |
arm_2L | 18831723..18832046 | 62..385 | 100 | -> | Plus |
arm_2L | 18832106..18832296 | 386..576 | 99 | -> | Plus |
arm_2L | 18832361..18833244 | 577..1460 | 100 | -> | Plus |
arm_2L | 18833305..18833492 | 1461..1650 | 98 | | Plus |
BO04555.pep Sequence
Translation from 16 to 1666
> BO04555.pep
MSKTRVYVVGVGMTKFEKPGRQADVCYPDFAREAITKALQDAGIKYEEVQ
QAVAGYVYGDSTCGQRAIYEVGMTGIPVYNVNNNCSTGSSALYLAKQIVE
SGNADCVLALGFEKMERGSLSSKYFDRANPMERHITEMGELAEIGAGPMA
AQIFGNAGKEHMKKYGTKPEHFGKIAWKNHKHSVNNPYSQFRDEYTLEQI
MKSPQVVEGVLTKLQCCPTSDGSGAAILASEAFVRRHGLEKQAVEIVGME
MASDPASTFADKSLMKIAGTDMTRLATQRLFAKSGYKPQDVQVVELHDCF
SANELITYEALGLCGEGNAGEFIDAGDNTYGGKFVVNPSGGLISKGHPLG
ATGLAQCAELCWQLRGLAEKRQVPNAQLALQHNLGLGGAVVVALYRLGFP
AANSVVRNLTAAGKAATSEDGFKVAPLLKLLEQAMQEDKDNLIEKVRAIY
GFKVNNGPNGQTGFWVIDAKQGKGKIIFNGTQKCDVTFIISDDDVFELLT
GKLPPQKAFFQGKIKIQGNMGFAMKLMDLQRSAQGRIEELRSKLASFLDH
BO04555.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:28:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ScpX-PA | 544 | CG17320-PA | 1..544 | 1..544 | 2821 | 100 | Plus |
CG17597-PB | 407 | CG17597-PB | 1..402 | 1..402 | 2046 | 96.5 | Plus |
CG17597-PA | 407 | CG17597-PA | 1..402 | 1..402 | 2046 | 96.5 | Plus |