Clone Sequence Records
BO04556.3prime Sequence
870 bp (775 high quality bases) assembled on 2005-12-01
> BO04556.3prime
ATGGTCTAGAAAGCTTGCCTTCAGCGGAAGTCCATTTATCAATAAACTAT
TATCAGCGCTTAATTCTTTTGGTCCTTCACCGACTTTCGTGTGGATTATA
TATCTGAAAGCATTTTTAGCATGAACATCTAGTGAATCCAACTTGCTGCT
CTCAGCATCTTGCACTTTTGGAATGGGAAGGCCTCGCAAGTAGGTGCCAC
CATCCGCTAAATCATTGGGGAACACCTTTTGGATAGCGCTCAAGAGATGC
GGAACGTGCTCCGCCAGGACATAGAGGCATGCATTTGGACCAGCATCGAA
GGTGTACGCGGCATGATAGCTACCCATTCGTTCGTTATAATCGTGAACGA
AGGACACGATACTGTGCGACACATCGTTCATGTAGACACACGGCGGATAG
GTGTCCAGGGCGATGGCATGGAACTGATTCGAGTCCTTCATCGTTATCTC
GGCGAATGCCTGAAAGTCATGGCTTGCGATGGCCTCCCTCAATCGGATAA
TCCGGTCGGGAACCACTTGATCCACGCGATGTTTGATCAACTGAGACGTC
TTCACCGCCTGTTGCATGCCCCTTGTCGAGGCAGTCTTCTTGCGTGCATC
GTTAACGACCAGGATGAGCACATGCATGTTGGGCCAGTGGTCGGATGGAG
CTATTTGCCTCGCCACCGAATCGCTGCCATCATCCAGAGCTCCGCGATGC
CACTGCACAAAACCGCCATACAGACTGCGACATGCCGATCCACTTCCTTG
CCGCGCCACCGTCGTCAGCTCCTCATTCAGCGGTATATCGTAGAGTCGGG
ACAGGGAGTACACCAGGCAGGCGTAGCCAGCTGCACTGGATGCCAGTCCG
GCGGCGGTGGGGAAATTGTT
BO04556.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:07:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8239-PA | 1167 | CG8239-RA | 313..1164 | 870..19 | 4260 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 05:36:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8239-RB | 2055 | CG8239-RB | 399..1250 | 870..19 | 4260 | 100 | Minus |
CG8239-RA | 1538 | CG8239-RA | 399..1250 | 870..19 | 4260 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 05:36:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 15750081..15750932 | 870..19 | 4260 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 05:36:55 has no hits.
BO04556.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:05:56 Download gff for
BO04556.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8239-PA | 313..1167 | 16..870 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:20:20 Download gff for
BO04556.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8239-PA | 313..1167 | 16..870 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 17:54:30 Download gff for
BO04556.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8239-RA | 399..1250 | 19..870 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:51:18 Download gff for
BO04556.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8239-RA | 399..1250 | 19..870 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 07:51:18 Download gff for
BO04556.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 15750081..15750932 | 19..870 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 17:54:30 Download gff for
BO04556.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 15644114..15644965 | 19..870 | 100 | | Minus |
BO04556.5prime Sequence
777 bp (712 high quality bases) assembled on 2005-11-29
> BO04556.5prime
GAAGTTATCAGTCGACATGTTTTCGGTTACTTGTGTGGCGCCCGTAAACA
TAGCGCTCATCAAATATTGGGGAAAGCGGCACGAAGAGCTAATTCTGCCC
GTCAATGATTCCATTAGCATGACTCTGAGCACCGATGAGCTCTGCGCCAA
GACAACAGTGACTGCATCGGAATCCTTTGAAACGAATCGCATGTGGCTGA
ATGGGGAGGAGGTGCCTTTTGAAGAGAGTTCCCGCCTGCAGCGCTGTTTG
AATGAAGTTCATCGATTGGCTGTGGCGAGTGGCTCCCAGAAGGTTCCGCC
AACCTGGAAGCTGCACATCGCATCGGTAAACAATTTCCCCACCGCCGCCG
GACTGGCATCCAGTGCAGCTGGCTACGCCTGCCTGGTGTACTCCCTGTCC
CGACTCTACGATATACCGCTGAATGAGGAGCTGACGACGGTGGCGCGGCA
AGGAAGTGGATCGGCATGTCGCAGTCTGTATGGCGGTTTTGTGCAGTGGC
ATCGCGGAGCTCTGGATGATGGCAGCGATTCGGTGGCGAGGCAAATAGCT
CCATCCGACCACTGGCCCAACATGCATGTGCTCATCCTGGTCGTTAACGA
TGCACGCAAGAAGACTGCCTCGACAAGGGGCATGCAACAGGCGGTGAAGA
CGTCTCAGTTGATCAAACATCGCGTGGATCAAGTGGTTCCCGACCGGATT
ATCCGATTGAGGGAGGCCATCGCAAGCCATGACTTTCAGGCATTCGCCGA
GATAACGATGAAGGACTCGAATCAGTT
BO04556.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:07:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8239-PA | 1167 | CG8239-RA | 1..761 | 17..777 | 3805 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:07:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8239-RB | 2055 | CG8239-RB | 85..847 | 15..777 | 3815 | 100 | Plus |
CG8239-RA | 1538 | CG8239-RA | 85..847 | 15..777 | 3815 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:07:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 15750008..15750529 | 256..777 | 2610 | 100 | Plus |
X | 23542271 | X | 15749830..15749949 | 138..257 | 600 | 100 | Plus |
X | 23542271 | X | 15749365..15749435 | 69..139 | 355 | 100 | Plus |
X | 23542271 | X | 15749250..15749304 | 15..69 | 275 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 10:07:57 has no hits.
BO04556.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:05:57 Download gff for
BO04556.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8239-PA | 1..761 | 17..777 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:20:21 Download gff for
BO04556.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8239-PA | 1..761 | 17..777 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:53:10 Download gff for
BO04556.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8239-RA | 81..847 | 8..777 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:06:22 Download gff for
BO04556.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8239-RA | 81..847 | 8..777 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:06:22 Download gff for
BO04556.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 15749246..15749303 | 8..68 | 93 | -> | Plus |
X | 15749365..15749435 | 69..139 | 100 | -> | Plus |
X | 15749832..15749949 | 140..257 | 100 | -> | Plus |
X | 15750010..15750529 | 258..777 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:53:10 Download gff for
BO04556.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 15643279..15643336 | 8..68 | 93 | -> | Plus |
arm_X | 15643398..15643468 | 69..139 | 100 | -> | Plus |
arm_X | 15643865..15643982 | 140..257 | 100 | -> | Plus |
arm_X | 15644043..15644562 | 258..777 | 100 | | Plus |
BO04556.complete Sequence
1198 bp (1198 high quality bases) assembled on 2005-09-08
GenBank Submission: FJ629796
> BO04556.complete
GAAGTTATCAGTCGACATGTTTTCGGTTACTTGTGTGGCGCCCGTAAACA
TAGCGCTCATCAAATATTGGGGAAAGCGGCACGAAGAGCTAATTCTGCCC
GTCAATGATTCCATTAGCATGACTCTGAGCACCGATGAGCTCTGCGCCAA
GACAACAGTGACTGCATCGGAATCCTTTGAAACGAATCGCATGTGGCTGA
ATGGGGAGGAGGTGCCTTTTGAAGAGAGTTCCCGCCTGCAGCGCTGTTTG
AATGAAGTTCATCGATTGGCTGTGGCGAGTGGCTCCCAGAAGGTTCCGCC
AACCTGGAAGCTGCACATCGCATCGGTAAACAATTTCCCCACCGCCGCCG
GACTGGCATCCAGTGCAGCTGGCTACGCCTGCCTGGTGTACTCCCTGTCC
CGACTCTACGATATACCGCTGAATGAGGAGCTGACGACGGTGGCGCGGCA
AGGAAGTGGATCGGCATGTCGCAGTCTGTATGGCGGTTTTGTGCAGTGGC
ATCGCGGAGCTCTGGATGATGGCAGCGATTCGGTGGCGAGGCAAATAGCT
CCATCCGACCACTGGCCCAACATGCATGTGCTCATCCTGGTCGTTAACGA
TGCACGCAAGAAGACTGCCTCGACAAGGGGCATGCAACAGGCGGTGAAGA
CGTCTCAGTTGATCAAACATCGCGTGGATCAAGTGGTTCCCGACCGGATT
ATCCGATTGAGGGAGGCCATCGCAAGCCATGACTTTCAGGCATTCGCCGA
GATAACGATGAAGGACTCGAATCAGTTCCATGCCATCGCCCTGGACACCT
ATCCGCCGTGTGTCTACATGAACGATGTGTCGCACAGTATCGTGTCCTTC
GTTCACGATTATAACGAACGAATGGGTAGCTATCATGCCGCGTACACCTT
CGATGCTGGTCCAAATGCATGCCTCTATGTCCTGGCGGAGCACGTTCCGC
ATCTCTTGAGCGCTATCCAAAAGGTGTTCCCCAATGATTTAGCGGATGGT
GGCACCTACTTGCGAGGCCTTCCCATTCCAAAAGTGCAAGATGCTGAGAG
CAGCAAGTTGGATTCACTAGATGTTCATGCTAAAAATGCTTTCAGATATA
TAATCCACACGAAAGTCGGTGAAGGACCAAAAGAATTAAGCGCTGATAAT
AGTTTATTGATAAATGGACTTCCGCTGAAGGCAAGCTTTCTAGACCAT
BO04556.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:54:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8239-RB | 1167 | CG8239-PB | 1..1164 | 17..1180 | 5820 | 100 | Plus |
CG8239-RA | 1167 | CG8239-PA | 1..1164 | 17..1180 | 5820 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:54:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8239-RB | 2055 | CG8239-RB | 85..1250 | 15..1180 | 5830 | 100 | Plus |
CG8239-RA | 1538 | CG8239-RA | 85..1250 | 15..1180 | 5830 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:54:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 15750008..15750932 | 256..1180 | 4625 | 100 | Plus |
X | 23542271 | X | 15749830..15749949 | 138..257 | 600 | 100 | Plus |
X | 23542271 | X | 15749365..15749435 | 69..139 | 355 | 100 | Plus |
X | 23542271 | X | 15749250..15749304 | 15..69 | 275 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 14:54:47 has no hits.
BO04556.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:40:19 Download gff for
BO04556.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8239-RA | 1..1167 | 17..1183 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:09:25 Download gff for
BO04556.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8239-RA | 70..1239 | 8..1180 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:46:56 Download gff for
BO04556.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8239-RA | 94..1250 | 24..1182 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:40:19 Download gff for
BO04556.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8239-RA | 70..1239 | 8..1180 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:55:36 Download gff for
BO04556.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8239-RA | 94..1250 | 24..1182 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:55:36 Download gff for
BO04556.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 15750010..15750932 | 258..1182 | 99 | | Plus |
X | 15749259..15749303 | 24..68 | 100 | -> | Plus |
X | 15749365..15749435 | 69..139 | 100 | -> | Plus |
X | 15749832..15749949 | 140..257 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:46:56 Download gff for
BO04556.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 15643292..15643336 | 24..68 | 100 | -> | Plus |
arm_X | 15643398..15643468 | 69..139 | 100 | -> | Plus |
arm_X | 15643865..15643982 | 140..257 | 100 | -> | Plus |
arm_X | 15644043..15644965 | 258..1182 | 99 | | Plus |
BO04556.pep Sequence
Translation from 16 to 1198
> BO04556.pep
MFSVTCVAPVNIALIKYWGKRHEELILPVNDSISMTLSTDELCAKTTVTA
SESFETNRMWLNGEEVPFEESSRLQRCLNEVHRLAVASGSQKVPPTWKLH
IASVNNFPTAAGLASSAAGYACLVYSLSRLYDIPLNEELTTVARQGSGSA
CRSLYGGFVQWHRGALDDGSDSVARQIAPSDHWPNMHVLILVVNDARKKT
ASTRGMQQAVKTSQLIKHRVDQVVPDRIIRLREAIASHDFQAFAEITMKD
SNQFHAIALDTYPPCVYMNDVSHSIVSFVHDYNERMGSYHAAYTFDAGPN
ACLYVLAEHVPHLLSAIQKVFPNDLADGGTYLRGLPIPKVQDAESSKLDS
LDVHAKNAFRYIIHTKVGEGPKELSADNSLLINGLPLKASFLDH
BO04556.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:34:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8239-PB | 388 | CG8239-PB | 1..388 | 1..388 | 2021 | 100 | Plus |
CG8239-PA | 388 | CG8239-PA | 1..388 | 1..388 | 2021 | 100 | Plus |