Clone BO04556 Report

Search the DGRC for BO04556

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:45
Well:56
Vector:pDNR-Dual
Associated Gene/TranscriptCG8239-RA
Protein status:BO04556.pep: validated full length
Sequenced Size:1198

Clone Sequence Records

BO04556.3prime Sequence

870 bp (775 high quality bases) assembled on 2005-12-01

> BO04556.3prime
ATGGTCTAGAAAGCTTGCCTTCAGCGGAAGTCCATTTATCAATAAACTAT
TATCAGCGCTTAATTCTTTTGGTCCTTCACCGACTTTCGTGTGGATTATA
TATCTGAAAGCATTTTTAGCATGAACATCTAGTGAATCCAACTTGCTGCT
CTCAGCATCTTGCACTTTTGGAATGGGAAGGCCTCGCAAGTAGGTGCCAC
CATCCGCTAAATCATTGGGGAACACCTTTTGGATAGCGCTCAAGAGATGC
GGAACGTGCTCCGCCAGGACATAGAGGCATGCATTTGGACCAGCATCGAA
GGTGTACGCGGCATGATAGCTACCCATTCGTTCGTTATAATCGTGAACGA
AGGACACGATACTGTGCGACACATCGTTCATGTAGACACACGGCGGATAG
GTGTCCAGGGCGATGGCATGGAACTGATTCGAGTCCTTCATCGTTATCTC
GGCGAATGCCTGAAAGTCATGGCTTGCGATGGCCTCCCTCAATCGGATAA
TCCGGTCGGGAACCACTTGATCCACGCGATGTTTGATCAACTGAGACGTC
TTCACCGCCTGTTGCATGCCCCTTGTCGAGGCAGTCTTCTTGCGTGCATC
GTTAACGACCAGGATGAGCACATGCATGTTGGGCCAGTGGTCGGATGGAG
CTATTTGCCTCGCCACCGAATCGCTGCCATCATCCAGAGCTCCGCGATGC
CACTGCACAAAACCGCCATACAGACTGCGACATGCCGATCCACTTCCTTG
CCGCGCCACCGTCGTCAGCTCCTCATTCAGCGGTATATCGTAGAGTCGGG
ACAGGGAGTACACCAGGCAGGCGTAGCCAGCTGCACTGGATGCCAGTCCG
GCGGCGGTGGGGAAATTGTT

BO04556.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:07:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG8239-PA 1167 CG8239-RA 313..1164 870..19 4260 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 05:36:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG8239-RB 2055 CG8239-RB 399..1250 870..19 4260 100 Minus
CG8239-RA 1538 CG8239-RA 399..1250 870..19 4260 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 05:36:54
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 15750081..15750932 870..19 4260 100 Minus
Blast to na_te.dros performed on 2015-02-13 05:36:55 has no hits.

BO04556.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:05:56 Download gff for BO04556.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8239-PA 313..1167 16..870 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:20:20 Download gff for BO04556.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8239-PA 313..1167 16..870 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 17:54:30 Download gff for BO04556.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8239-RA 399..1250 19..870 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:51:18 Download gff for BO04556.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8239-RA 399..1250 19..870 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 07:51:18 Download gff for BO04556.3prime
Subject Subject Range Query Range Percent Splice Strand
X 15750081..15750932 19..870 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 17:54:30 Download gff for BO04556.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 15644114..15644965 19..870 100   Minus

BO04556.5prime Sequence

777 bp (712 high quality bases) assembled on 2005-11-29

> BO04556.5prime
GAAGTTATCAGTCGACATGTTTTCGGTTACTTGTGTGGCGCCCGTAAACA
TAGCGCTCATCAAATATTGGGGAAAGCGGCACGAAGAGCTAATTCTGCCC
GTCAATGATTCCATTAGCATGACTCTGAGCACCGATGAGCTCTGCGCCAA
GACAACAGTGACTGCATCGGAATCCTTTGAAACGAATCGCATGTGGCTGA
ATGGGGAGGAGGTGCCTTTTGAAGAGAGTTCCCGCCTGCAGCGCTGTTTG
AATGAAGTTCATCGATTGGCTGTGGCGAGTGGCTCCCAGAAGGTTCCGCC
AACCTGGAAGCTGCACATCGCATCGGTAAACAATTTCCCCACCGCCGCCG
GACTGGCATCCAGTGCAGCTGGCTACGCCTGCCTGGTGTACTCCCTGTCC
CGACTCTACGATATACCGCTGAATGAGGAGCTGACGACGGTGGCGCGGCA
AGGAAGTGGATCGGCATGTCGCAGTCTGTATGGCGGTTTTGTGCAGTGGC
ATCGCGGAGCTCTGGATGATGGCAGCGATTCGGTGGCGAGGCAAATAGCT
CCATCCGACCACTGGCCCAACATGCATGTGCTCATCCTGGTCGTTAACGA
TGCACGCAAGAAGACTGCCTCGACAAGGGGCATGCAACAGGCGGTGAAGA
CGTCTCAGTTGATCAAACATCGCGTGGATCAAGTGGTTCCCGACCGGATT
ATCCGATTGAGGGAGGCCATCGCAAGCCATGACTTTCAGGCATTCGCCGA
GATAACGATGAAGGACTCGAATCAGTT

BO04556.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:07:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG8239-PA 1167 CG8239-RA 1..761 17..777 3805 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:07:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG8239-RB 2055 CG8239-RB 85..847 15..777 3815 100 Plus
CG8239-RA 1538 CG8239-RA 85..847 15..777 3815 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:07:56
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 15750008..15750529 256..777 2610 100 Plus
X 23542271 X 15749830..15749949 138..257 600 100 Plus
X 23542271 X 15749365..15749435 69..139 355 100 Plus
X 23542271 X 15749250..15749304 15..69 275 100 Plus
Blast to na_te.dros performed on 2015-02-12 10:07:57 has no hits.

BO04556.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:05:57 Download gff for BO04556.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8239-PA 1..761 17..777 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:20:21 Download gff for BO04556.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8239-PA 1..761 17..777 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:53:10 Download gff for BO04556.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8239-RA 81..847 8..777 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:06:22 Download gff for BO04556.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8239-RA 81..847 8..777 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:06:22 Download gff for BO04556.5prime
Subject Subject Range Query Range Percent Splice Strand
X 15749246..15749303 8..68 93 -> Plus
X 15749365..15749435 69..139 100 -> Plus
X 15749832..15749949 140..257 100 -> Plus
X 15750010..15750529 258..777 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:53:10 Download gff for BO04556.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 15643279..15643336 8..68 93 -> Plus
arm_X 15643398..15643468 69..139 100 -> Plus
arm_X 15643865..15643982 140..257 100 -> Plus
arm_X 15644043..15644562 258..777 100   Plus

BO04556.complete Sequence

1198 bp (1198 high quality bases) assembled on 2005-09-08

GenBank Submission: FJ629796

> BO04556.complete
GAAGTTATCAGTCGACATGTTTTCGGTTACTTGTGTGGCGCCCGTAAACA
TAGCGCTCATCAAATATTGGGGAAAGCGGCACGAAGAGCTAATTCTGCCC
GTCAATGATTCCATTAGCATGACTCTGAGCACCGATGAGCTCTGCGCCAA
GACAACAGTGACTGCATCGGAATCCTTTGAAACGAATCGCATGTGGCTGA
ATGGGGAGGAGGTGCCTTTTGAAGAGAGTTCCCGCCTGCAGCGCTGTTTG
AATGAAGTTCATCGATTGGCTGTGGCGAGTGGCTCCCAGAAGGTTCCGCC
AACCTGGAAGCTGCACATCGCATCGGTAAACAATTTCCCCACCGCCGCCG
GACTGGCATCCAGTGCAGCTGGCTACGCCTGCCTGGTGTACTCCCTGTCC
CGACTCTACGATATACCGCTGAATGAGGAGCTGACGACGGTGGCGCGGCA
AGGAAGTGGATCGGCATGTCGCAGTCTGTATGGCGGTTTTGTGCAGTGGC
ATCGCGGAGCTCTGGATGATGGCAGCGATTCGGTGGCGAGGCAAATAGCT
CCATCCGACCACTGGCCCAACATGCATGTGCTCATCCTGGTCGTTAACGA
TGCACGCAAGAAGACTGCCTCGACAAGGGGCATGCAACAGGCGGTGAAGA
CGTCTCAGTTGATCAAACATCGCGTGGATCAAGTGGTTCCCGACCGGATT
ATCCGATTGAGGGAGGCCATCGCAAGCCATGACTTTCAGGCATTCGCCGA
GATAACGATGAAGGACTCGAATCAGTTCCATGCCATCGCCCTGGACACCT
ATCCGCCGTGTGTCTACATGAACGATGTGTCGCACAGTATCGTGTCCTTC
GTTCACGATTATAACGAACGAATGGGTAGCTATCATGCCGCGTACACCTT
CGATGCTGGTCCAAATGCATGCCTCTATGTCCTGGCGGAGCACGTTCCGC
ATCTCTTGAGCGCTATCCAAAAGGTGTTCCCCAATGATTTAGCGGATGGT
GGCACCTACTTGCGAGGCCTTCCCATTCCAAAAGTGCAAGATGCTGAGAG
CAGCAAGTTGGATTCACTAGATGTTCATGCTAAAAATGCTTTCAGATATA
TAATCCACACGAAAGTCGGTGAAGGACCAAAAGAATTAAGCGCTGATAAT
AGTTTATTGATAAATGGACTTCCGCTGAAGGCAAGCTTTCTAGACCAT

BO04556.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:54:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG8239-RB 1167 CG8239-PB 1..1164 17..1180 5820 100 Plus
CG8239-RA 1167 CG8239-PA 1..1164 17..1180 5820 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:54:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG8239-RB 2055 CG8239-RB 85..1250 15..1180 5830 100 Plus
CG8239-RA 1538 CG8239-RA 85..1250 15..1180 5830 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:54:46
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 15750008..15750932 256..1180 4625 100 Plus
X 23542271 X 15749830..15749949 138..257 600 100 Plus
X 23542271 X 15749365..15749435 69..139 355 100 Plus
X 23542271 X 15749250..15749304 15..69 275 100 Plus
Blast to na_te.dros performed on 2014-11-27 14:54:47 has no hits.

BO04556.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:40:19 Download gff for BO04556.complete
Subject Subject Range Query Range Percent Splice Strand
CG8239-RA 1..1167 17..1183 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:09:25 Download gff for BO04556.complete
Subject Subject Range Query Range Percent Splice Strand
CG8239-RA 70..1239 8..1180 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:46:56 Download gff for BO04556.complete
Subject Subject Range Query Range Percent Splice Strand
CG8239-RA 94..1250 24..1182 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:40:19 Download gff for BO04556.complete
Subject Subject Range Query Range Percent Splice Strand
CG8239-RA 70..1239 8..1180 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:55:36 Download gff for BO04556.complete
Subject Subject Range Query Range Percent Splice Strand
CG8239-RA 94..1250 24..1182 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:55:36 Download gff for BO04556.complete
Subject Subject Range Query Range Percent Splice Strand
X 15750010..15750932 258..1182 99   Plus
X 15749259..15749303 24..68 100 -> Plus
X 15749365..15749435 69..139 100 -> Plus
X 15749832..15749949 140..257 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:46:56 Download gff for BO04556.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 15643292..15643336 24..68 100 -> Plus
arm_X 15643398..15643468 69..139 100 -> Plus
arm_X 15643865..15643982 140..257 100 -> Plus
arm_X 15644043..15644965 258..1182 99   Plus

BO04556.pep Sequence

Translation from 16 to 1198

> BO04556.pep
MFSVTCVAPVNIALIKYWGKRHEELILPVNDSISMTLSTDELCAKTTVTA
SESFETNRMWLNGEEVPFEESSRLQRCLNEVHRLAVASGSQKVPPTWKLH
IASVNNFPTAAGLASSAAGYACLVYSLSRLYDIPLNEELTTVARQGSGSA
CRSLYGGFVQWHRGALDDGSDSVARQIAPSDHWPNMHVLILVVNDARKKT
ASTRGMQQAVKTSQLIKHRVDQVVPDRIIRLREAIASHDFQAFAEITMKD
SNQFHAIALDTYPPCVYMNDVSHSIVSFVHDYNERMGSYHAAYTFDAGPN
ACLYVLAEHVPHLLSAIQKVFPNDLADGGTYLRGLPIPKVQDAESSKLDS
LDVHAKNAFRYIIHTKVGEGPKELSADNSLLINGLPLKASFLDH

BO04556.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:34:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG8239-PB 388 CG8239-PB 1..388 1..388 2021 100 Plus
CG8239-PA 388 CG8239-PA 1..388 1..388 2021 100 Plus