Clone Sequence Records
BO04557.3prime Sequence
859 bp (839 high quality bases) assembled on 2005-12-01
> BO04557.3prime
ATGGTCTAGAAAGCTTGCTCCCTTCTTAAAGTCGAGAAGATCGTCCAGAG
CCGCTGCCTTGCCGGAATCGTCCTTCTCCAATTCCGCTCGCGTGCATCTT
CCACAACAGTCAGCCGAGGGCTTGTTCTCGCACTCTCCTATCGCTGGTGG
CTTGAAGTTGGGAGTCCAGGGTCCCAGGCTGCCGCTAGCGTAGAAGTCCA
TGGGATAGGCGTTGTTGCGCGGCGACGAGTTGTGCGGCGTCCACTCGACA
TCGCCCAAAACCACGGACAGCTCGTAAGGATTCAGCAACGGTTGGCTAAA
TGCGGATCCCCAGTCGATTGAAAGTCGCGGACAAGCAATCTGCACAAAGG
CGTCGATGTCGGCGAAAAGAGCCAATTTCTGTGGGAAGATCTCCGACAGC
AATAATGTGGTAGTTTCAATACCCTTGGCATGAAGTCGCTTCTCCAAAAA
CCGATGCACTCTTGAACTGCCTTGTCTTCCGAGTGTTCCAAGTATGATGC
CAATGCGGCGCGCCTTCTTAGCCCGCTGAACAGCGTCCAGGCGCAGATTC
TGCATCGCCGAGTGATCGTACTGCTCTGTGGTGAACTTCTTTTCATAGGG
ATCGTACTTGTAAGCCTTTAGCAACGGGTTTGCTATCATTGCGGATTCTA
GATGAAAACGCCCGTCACCCAAATATATTATCATCTTCGTTGTCTCTGGC
AGCTGAGGCGAAGTGCACCCAAGAATCTCTCCAGGACTAAGTGGCTTGGC
CTGTGGTACTATCACATCATAGCCGGCTGCCTTTAGCTCAGTAGATGCAG
CTTGCAGCGTTGTCACGAACTGTATTGTGCTTACTAAAGCTATTTGGCCC
ACTTCCGGG
BO04557.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:07:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11652-PA | 1365 | CG11652-RA | 522..1362 | 859..19 | 4205 | 100 | Minus |
CG11652-PB | 1365 | CG11652-RB | 522..1362 | 859..19 | 4205 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:13:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11652-RC | 1720 | CG11652-RC | 610..1450 | 859..19 | 4205 | 100 | Minus |
CG11652-RB | 1784 | CG11652-RB | 674..1514 | 859..19 | 4205 | 100 | Minus |
CG11652-RA | 1725 | CG11652-RA | 615..1455 | 859..19 | 4205 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:13:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 11694149..11694747 | 19..617 | 2995 | 100 | Plus |
3L | 28110227 | 3L | 11694809..11695053 | 615..859 | 1225 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 00:13:08 has no hits.
BO04557.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:05:58 Download gff for
BO04557.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11652-PB | 522..1365 | 15..859 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:20:23 Download gff for
BO04557.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11652-PB | 522..1365 | 15..859 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 20:31:06 Download gff for
BO04557.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11652-RA | 615..1460 | 13..859 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:41:26 Download gff for
BO04557.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11652-RA | 615..1460 | 13..859 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:41:26 Download gff for
BO04557.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 11694144..11694745 | 13..615 | 99 | <- | Plus |
3L | 11694810..11695053 | 616..859 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 20:31:06 Download gff for
BO04557.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 11687244..11687845 | 13..615 | 99 | <- | Plus |
arm_3L | 11687910..11688153 | 616..859 | 100 | | Plus |
BO04557.5prime Sequence
876 bp (698 high quality bases) assembled on 2005-11-29
> BO04557.5prime
GAAGTTATCAGTCGACATGTTGGACGTGATCCAACCCAGCAGCAACCTCC
CGACCAGCGAAAGCACCGATATTGTGGTGGTCCGAGCCAGACCAAAGAAG
GTGTTCAAGCCAAAGGCGCGCATCAATCGGATTCCCCAGGAGCTGCTCGA
TGATCCACTGCTGCAGCAGGCCATCGACCGTCTGCCCTCGAACTACAACT
TCGAGATGCACAAGACGATTTGGCGCATACGGGAGATGAAGGCCAAGCGT
GTGGCCCTGCAACTGCCGGAGGGCCTGCTGATGTACGCCATGGTTATCAG
CGACATTGTGGAGCGATTCACCAGCGCAGATACTGTGATAATGGGCGATG
TGACTTACGGAGCTTGCTGCGTGGACGACTACACTGCCAAGGCGTTGGGA
GCTGATCTGCTGGTCCACTACGGCCACAGCTGCCTCATTCCCGTAGATCA
GACGTGTGGCATCAAGGTGCTGTACATTTTTGTAGACATCAAAATCGATC
CGCTGCACTTCCTGGACTCTGTAAAGCTGAACTTCCGCCCGGAAGTGGGC
CAAATAGCTTTAGTAAGCACAATACAGTTCGTGACAACGCTGCAAGCTGC
ATCTACTGAGCTAAAGGCAGCCGGCTATGATGTGATAGTACCACAGGCCA
AGCCACTTAGTCCTGGAGAGATTCTTGGGTGCACTTCGCCTCAGCTGCCA
GAGACAACGAAGATGATAATATATTTGGGTGACGGGCGTTTTCATCTAGA
ATCCGCAATGATAGCAAACCCGTTGCTAAAGGCTTACAAGTACGATCCCT
ATGAAAAGAAGTTCACCACAGAGCAGTACCGATCACTCGGCGATGCAGAA
TCTGCGCCTGGACGCTGTTCAGCGGG
BO04557.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:07:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11652-PA | 1365 | CG11652-RA | 1..813 | 17..829 | 4065 | 100 | Plus |
CG11652-PB | 1365 | CG11652-RB | 1..813 | 17..829 | 4065 | 100 | Plus |
CG11652-PA | 1365 | CG11652-RA | 813..859 | 830..876 | 235 | 100 | Plus |
CG11652-PB | 1365 | CG11652-RB | 813..859 | 830..876 | 235 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:08:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11652-RC | 1720 | CG11652-RC | 88..947 | 16..876 | 4280 | 99.9 | Plus |
CG11652-RB | 1784 | CG11652-RB | 152..1011 | 16..876 | 4280 | 99.9 | Plus |
CG11652-RA | 1725 | CG11652-RA | 93..952 | 16..876 | 4280 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 02:08:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 11694809..11695575 | 782..16 | 3835 | 100 | Minus |
3L | 28110227 | 3L | 11694652..11694747 | 876..780 | 435 | 99 | Minus |
Blast to na_te.dros performed on 2015-02-13 02:08:32 has no hits.
BO04557.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:05:59 Download gff for
BO04557.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11652-PB | 1..859 | 17..876 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:20:24 Download gff for
BO04557.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11652-PB | 1..859 | 17..876 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 06:34:48 Download gff for
BO04557.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11652-RA | 89..952 | 12..876 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:46:18 Download gff for
BO04557.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11652-RA | 89..952 | 12..876 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:46:18 Download gff for
BO04557.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 11694652..11694745 | 782..876 | 98 | <- | Minus |
3L | 11694810..11695584 | 5..781 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 06:34:48 Download gff for
BO04557.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 11687752..11687845 | 782..876 | 98 | <- | Minus |
arm_3L | 11687910..11688684 | 5..781 | 99 | | Minus |
BO04557.complete Sequence
1396 bp (1396 high quality bases) assembled on 2005-09-08
GenBank Submission: FJ629797
> BO04557.complete
GAAGTTATCAGTCGACATGTTGGACGTGATCCAACCCAGCAGCAACCTCC
CGACCAGCGAAAGCACCGATATTGTGGTGGTCCGAGCCAGACCAAAGAAG
GTGTTCAAGCCAAAGGCGCGCATCAATCGGATTCCCCAGGAGCTGCTCGA
TGATCCACTGCTGCAGCAGGCCATCGACCGTCTGCCCTCGAACTACAACT
TCGAGATGCACAAGACGATTTGGCGCATACGGGAGATGAAGGCCAAGCGT
GTGGCCCTGCAACTGCCGGAGGGCCTGCTGATGTACGCCATGGTTATCAG
CGACATTGTGGAGCGATTCACCAGCGCAGATACTGTGATAATGGGCGATG
TGACTTACGGAGCTTGCTGCGTGGACGACTACACTGCCAAGGCGTTGGGA
GCTGATCTGCTGGTCCACTACGGCCACAGCTGCCTCATTCCCGTAGATCA
GACGTGTGGCATCAAGGTGCTGTACATTTTTGTAGACATCAAAATCGATC
CGCTGCACTTCCTGGACTCTGTAAAGCTGAACTTCCGCCCGGAAGTGGGC
CAAATAGCTTTAGTAAGCACAATACAGTTCGTGACAACGCTGCAAGCTGC
ATCTACTGAGCTAAAGGCAGCCGGCTATGATGTGATAGTACCACAGGCCA
AGCCACTTAGTCCTGGAGAGATTCTTGGGTGCACTTCGCCTCAGCTGCCA
GAGACAACGAAGATGATAATATATTTGGGTGACGGGCGTTTTCATCTAGA
ATCCGCAATGATAGCAAACCCGTTGCTAAAGGCTTACAAGTACGATCCCT
ATGAAAAGAAGTTCACCACAGAGCAGTACGATCACTCGGCGATGCAGAAT
CTGCGCCTGGACGCTGTTCAGCGGGCTAAGAAGGCGCGCCGCATTGGCAT
CATACTTGGAACACTCGGAAGACAAGGCAGTTCAAGAGTGCATCGGTTTT
TGGAGAAGCGACTTCATGCCAAGGGTATTGAAACTACCACATTATTGCTG
TCGGAGATCTTCCCACAGAAATTGGCTCTTTTCGCCGACATCGACGCCTT
TGTGCAGATTGCTTGTCCGCGACTTTCAATCGACTGGGGATCCGCATTTA
GCCAACCGTTGCTGAATCCTTACGAGCTGTCCGTGGTTTTGGGCGATGTC
GAGTGGACGCCGCACAACTCGTCGCCGCGCAACAACGCCTATCCCATGGA
CTTCTACGCTAGCGGCAGCCTGGGACCCTGGACTCCCAACTTCAAGCCAC
CAGCGATAGGAGAGTGCGAGAACAAGCCCTCGGCTGACTGTTGTGGAAGA
TGCACGCGAGCGGAATTGGAGAAGGACGATTCCGGCAAGGCAGCGGCTCT
GGACGATCTTCTCGACTTTAAGAAGGGAGCAAGCTTTCTAGACCAT
BO04557.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:38:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11652-RC | 1365 | CG11652-PC | 1..1362 | 17..1378 | 6810 | 100 | Plus |
CG11652-RB | 1365 | CG11652-PB | 1..1362 | 17..1378 | 6810 | 100 | Plus |
CG11652-RA | 1365 | CG11652-PA | 1..1362 | 17..1378 | 6810 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:38:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11652-RC | 1720 | CG11652-RC | 88..1450 | 16..1378 | 6815 | 100 | Plus |
CG11652-RB | 1784 | CG11652-RB | 152..1514 | 16..1378 | 6815 | 100 | Plus |
CG11652-RA | 1725 | CG11652-RA | 93..1455 | 16..1378 | 6815 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:37:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 11694809..11695575 | 782..16 | 3835 | 100 | Minus |
3L | 28110227 | 3L | 11694149..11694747 | 1378..780 | 2995 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 23:38:00 has no hits.
BO04557.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:40:20 Download gff for
BO04557.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11652-RB | 1..1365 | 17..1382 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:09:28 Download gff for
BO04557.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11652-RB | 97..1464 | 16..1384 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:34:00 Download gff for
BO04557.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11652-RA | 99..1455 | 22..1380 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:40:20 Download gff for
BO04557.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11652-RB | 97..1464 | 16..1384 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:05:02 Download gff for
BO04557.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11652-RA | 99..1455 | 22..1380 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:05:02 Download gff for
BO04557.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 11694147..11694745 | 782..1380 | 99 | <- | Minus |
3L | 11694810..11695569 | 22..781 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:34:00 Download gff for
BO04557.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 11687247..11687845 | 782..1380 | 99 | <- | Minus |
arm_3L | 11687910..11688669 | 22..781 | 100 | | Minus |
BO04557.pep Sequence
Translation from 16 to 1396
> BO04557.pep
MLDVIQPSSNLPTSESTDIVVVRARPKKVFKPKARINRIPQELLDDPLLQ
QAIDRLPSNYNFEMHKTIWRIREMKAKRVALQLPEGLLMYAMVISDIVER
FTSADTVIMGDVTYGACCVDDYTAKALGADLLVHYGHSCLIPVDQTCGIK
VLYIFVDIKIDPLHFLDSVKLNFRPEVGQIALVSTIQFVTTLQAASTELK
AAGYDVIVPQAKPLSPGEILGCTSPQLPETTKMIIYLGDGRFHLESAMIA
NPLLKAYKYDPYEKKFTTEQYDHSAMQNLRLDAVQRAKKARRIGIILGTL
GRQGSSRVHRFLEKRLHAKGIETTTLLLSEIFPQKLALFADIDAFVQIAC
PRLSIDWGSAFSQPLLNPYELSVVLGDVEWTPHNSSPRNNAYPMDFYASG
SLGPWTPNFKPPAIGECENKPSADCCGRCTRAELEKDDSGKAAALDDLLD
FKKGASFLDH
BO04557.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:34:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11652-PC | 454 | CG11652-PC | 1..454 | 1..454 | 2363 | 100 | Plus |
CG11652-PB | 454 | CG11652-PB | 1..454 | 1..454 | 2363 | 100 | Plus |
CG11652-PA | 454 | CG11652-PA | 1..454 | 1..454 | 2363 | 100 | Plus |
CG7265-PA | 469 | CG7265-PA | 36..369 | 59..396 | 254 | 25.1 | Plus |