Clone BO04557 Report

Search the DGRC for BO04557

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:45
Well:57
Vector:pDNR-Dual
Associated Gene/TranscriptCG11652-RA
Protein status:BO04557.pep: validated full length
Sequenced Size:1396

Clone Sequence Records

BO04557.3prime Sequence

859 bp (839 high quality bases) assembled on 2005-12-01

> BO04557.3prime
ATGGTCTAGAAAGCTTGCTCCCTTCTTAAAGTCGAGAAGATCGTCCAGAG
CCGCTGCCTTGCCGGAATCGTCCTTCTCCAATTCCGCTCGCGTGCATCTT
CCACAACAGTCAGCCGAGGGCTTGTTCTCGCACTCTCCTATCGCTGGTGG
CTTGAAGTTGGGAGTCCAGGGTCCCAGGCTGCCGCTAGCGTAGAAGTCCA
TGGGATAGGCGTTGTTGCGCGGCGACGAGTTGTGCGGCGTCCACTCGACA
TCGCCCAAAACCACGGACAGCTCGTAAGGATTCAGCAACGGTTGGCTAAA
TGCGGATCCCCAGTCGATTGAAAGTCGCGGACAAGCAATCTGCACAAAGG
CGTCGATGTCGGCGAAAAGAGCCAATTTCTGTGGGAAGATCTCCGACAGC
AATAATGTGGTAGTTTCAATACCCTTGGCATGAAGTCGCTTCTCCAAAAA
CCGATGCACTCTTGAACTGCCTTGTCTTCCGAGTGTTCCAAGTATGATGC
CAATGCGGCGCGCCTTCTTAGCCCGCTGAACAGCGTCCAGGCGCAGATTC
TGCATCGCCGAGTGATCGTACTGCTCTGTGGTGAACTTCTTTTCATAGGG
ATCGTACTTGTAAGCCTTTAGCAACGGGTTTGCTATCATTGCGGATTCTA
GATGAAAACGCCCGTCACCCAAATATATTATCATCTTCGTTGTCTCTGGC
AGCTGAGGCGAAGTGCACCCAAGAATCTCTCCAGGACTAAGTGGCTTGGC
CTGTGGTACTATCACATCATAGCCGGCTGCCTTTAGCTCAGTAGATGCAG
CTTGCAGCGTTGTCACGAACTGTATTGTGCTTACTAAAGCTATTTGGCCC
ACTTCCGGG

BO04557.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:07:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG11652-PA 1365 CG11652-RA 522..1362 859..19 4205 100 Minus
CG11652-PB 1365 CG11652-RB 522..1362 859..19 4205 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:13:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG11652-RC 1720 CG11652-RC 610..1450 859..19 4205 100 Minus
CG11652-RB 1784 CG11652-RB 674..1514 859..19 4205 100 Minus
CG11652-RA 1725 CG11652-RA 615..1455 859..19 4205 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:13:05
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 11694149..11694747 19..617 2995 100 Plus
3L 28110227 3L 11694809..11695053 615..859 1225 100 Plus
Blast to na_te.dros performed on 2015-02-13 00:13:08 has no hits.

BO04557.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:05:58 Download gff for BO04557.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11652-PB 522..1365 15..859 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:20:23 Download gff for BO04557.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11652-PB 522..1365 15..859 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 20:31:06 Download gff for BO04557.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11652-RA 615..1460 13..859 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:41:26 Download gff for BO04557.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11652-RA 615..1460 13..859 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:41:26 Download gff for BO04557.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 11694144..11694745 13..615 99 <- Plus
3L 11694810..11695053 616..859 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 20:31:06 Download gff for BO04557.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 11687244..11687845 13..615 99 <- Plus
arm_3L 11687910..11688153 616..859 100   Plus

BO04557.5prime Sequence

876 bp (698 high quality bases) assembled on 2005-11-29

> BO04557.5prime
GAAGTTATCAGTCGACATGTTGGACGTGATCCAACCCAGCAGCAACCTCC
CGACCAGCGAAAGCACCGATATTGTGGTGGTCCGAGCCAGACCAAAGAAG
GTGTTCAAGCCAAAGGCGCGCATCAATCGGATTCCCCAGGAGCTGCTCGA
TGATCCACTGCTGCAGCAGGCCATCGACCGTCTGCCCTCGAACTACAACT
TCGAGATGCACAAGACGATTTGGCGCATACGGGAGATGAAGGCCAAGCGT
GTGGCCCTGCAACTGCCGGAGGGCCTGCTGATGTACGCCATGGTTATCAG
CGACATTGTGGAGCGATTCACCAGCGCAGATACTGTGATAATGGGCGATG
TGACTTACGGAGCTTGCTGCGTGGACGACTACACTGCCAAGGCGTTGGGA
GCTGATCTGCTGGTCCACTACGGCCACAGCTGCCTCATTCCCGTAGATCA
GACGTGTGGCATCAAGGTGCTGTACATTTTTGTAGACATCAAAATCGATC
CGCTGCACTTCCTGGACTCTGTAAAGCTGAACTTCCGCCCGGAAGTGGGC
CAAATAGCTTTAGTAAGCACAATACAGTTCGTGACAACGCTGCAAGCTGC
ATCTACTGAGCTAAAGGCAGCCGGCTATGATGTGATAGTACCACAGGCCA
AGCCACTTAGTCCTGGAGAGATTCTTGGGTGCACTTCGCCTCAGCTGCCA
GAGACAACGAAGATGATAATATATTTGGGTGACGGGCGTTTTCATCTAGA
ATCCGCAATGATAGCAAACCCGTTGCTAAAGGCTTACAAGTACGATCCCT
ATGAAAAGAAGTTCACCACAGAGCAGTACCGATCACTCGGCGATGCAGAA
TCTGCGCCTGGACGCTGTTCAGCGGG

BO04557.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:07:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG11652-PA 1365 CG11652-RA 1..813 17..829 4065 100 Plus
CG11652-PB 1365 CG11652-RB 1..813 17..829 4065 100 Plus
CG11652-PA 1365 CG11652-RA 813..859 830..876 235 100 Plus
CG11652-PB 1365 CG11652-RB 813..859 830..876 235 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:08:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG11652-RC 1720 CG11652-RC 88..947 16..876 4280 99.9 Plus
CG11652-RB 1784 CG11652-RB 152..1011 16..876 4280 99.9 Plus
CG11652-RA 1725 CG11652-RA 93..952 16..876 4280 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 02:08:29
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 11694809..11695575 782..16 3835 100 Minus
3L 28110227 3L 11694652..11694747 876..780 435 99 Minus
Blast to na_te.dros performed on 2015-02-13 02:08:32 has no hits.

BO04557.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:05:59 Download gff for BO04557.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11652-PB 1..859 17..876 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:20:24 Download gff for BO04557.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11652-PB 1..859 17..876 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 06:34:48 Download gff for BO04557.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11652-RA 89..952 12..876 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:46:18 Download gff for BO04557.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11652-RA 89..952 12..876 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:46:18 Download gff for BO04557.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 11694652..11694745 782..876 98 <- Minus
3L 11694810..11695584 5..781 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 06:34:48 Download gff for BO04557.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 11687752..11687845 782..876 98 <- Minus
arm_3L 11687910..11688684 5..781 99   Minus

BO04557.complete Sequence

1396 bp (1396 high quality bases) assembled on 2005-09-08

GenBank Submission: FJ629797

> BO04557.complete
GAAGTTATCAGTCGACATGTTGGACGTGATCCAACCCAGCAGCAACCTCC
CGACCAGCGAAAGCACCGATATTGTGGTGGTCCGAGCCAGACCAAAGAAG
GTGTTCAAGCCAAAGGCGCGCATCAATCGGATTCCCCAGGAGCTGCTCGA
TGATCCACTGCTGCAGCAGGCCATCGACCGTCTGCCCTCGAACTACAACT
TCGAGATGCACAAGACGATTTGGCGCATACGGGAGATGAAGGCCAAGCGT
GTGGCCCTGCAACTGCCGGAGGGCCTGCTGATGTACGCCATGGTTATCAG
CGACATTGTGGAGCGATTCACCAGCGCAGATACTGTGATAATGGGCGATG
TGACTTACGGAGCTTGCTGCGTGGACGACTACACTGCCAAGGCGTTGGGA
GCTGATCTGCTGGTCCACTACGGCCACAGCTGCCTCATTCCCGTAGATCA
GACGTGTGGCATCAAGGTGCTGTACATTTTTGTAGACATCAAAATCGATC
CGCTGCACTTCCTGGACTCTGTAAAGCTGAACTTCCGCCCGGAAGTGGGC
CAAATAGCTTTAGTAAGCACAATACAGTTCGTGACAACGCTGCAAGCTGC
ATCTACTGAGCTAAAGGCAGCCGGCTATGATGTGATAGTACCACAGGCCA
AGCCACTTAGTCCTGGAGAGATTCTTGGGTGCACTTCGCCTCAGCTGCCA
GAGACAACGAAGATGATAATATATTTGGGTGACGGGCGTTTTCATCTAGA
ATCCGCAATGATAGCAAACCCGTTGCTAAAGGCTTACAAGTACGATCCCT
ATGAAAAGAAGTTCACCACAGAGCAGTACGATCACTCGGCGATGCAGAAT
CTGCGCCTGGACGCTGTTCAGCGGGCTAAGAAGGCGCGCCGCATTGGCAT
CATACTTGGAACACTCGGAAGACAAGGCAGTTCAAGAGTGCATCGGTTTT
TGGAGAAGCGACTTCATGCCAAGGGTATTGAAACTACCACATTATTGCTG
TCGGAGATCTTCCCACAGAAATTGGCTCTTTTCGCCGACATCGACGCCTT
TGTGCAGATTGCTTGTCCGCGACTTTCAATCGACTGGGGATCCGCATTTA
GCCAACCGTTGCTGAATCCTTACGAGCTGTCCGTGGTTTTGGGCGATGTC
GAGTGGACGCCGCACAACTCGTCGCCGCGCAACAACGCCTATCCCATGGA
CTTCTACGCTAGCGGCAGCCTGGGACCCTGGACTCCCAACTTCAAGCCAC
CAGCGATAGGAGAGTGCGAGAACAAGCCCTCGGCTGACTGTTGTGGAAGA
TGCACGCGAGCGGAATTGGAGAAGGACGATTCCGGCAAGGCAGCGGCTCT
GGACGATCTTCTCGACTTTAAGAAGGGAGCAAGCTTTCTAGACCAT

BO04557.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:38:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG11652-RC 1365 CG11652-PC 1..1362 17..1378 6810 100 Plus
CG11652-RB 1365 CG11652-PB 1..1362 17..1378 6810 100 Plus
CG11652-RA 1365 CG11652-PA 1..1362 17..1378 6810 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:38:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG11652-RC 1720 CG11652-RC 88..1450 16..1378 6815 100 Plus
CG11652-RB 1784 CG11652-RB 152..1514 16..1378 6815 100 Plus
CG11652-RA 1725 CG11652-RA 93..1455 16..1378 6815 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:37:59
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 11694809..11695575 782..16 3835 100 Minus
3L 28110227 3L 11694149..11694747 1378..780 2995 100 Minus
Blast to na_te.dros performed on 2014-11-27 23:38:00 has no hits.

BO04557.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:40:20 Download gff for BO04557.complete
Subject Subject Range Query Range Percent Splice Strand
CG11652-RB 1..1365 17..1382 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:09:28 Download gff for BO04557.complete
Subject Subject Range Query Range Percent Splice Strand
CG11652-RB 97..1464 16..1384 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:34:00 Download gff for BO04557.complete
Subject Subject Range Query Range Percent Splice Strand
CG11652-RA 99..1455 22..1380 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:40:20 Download gff for BO04557.complete
Subject Subject Range Query Range Percent Splice Strand
CG11652-RB 97..1464 16..1384 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:05:02 Download gff for BO04557.complete
Subject Subject Range Query Range Percent Splice Strand
CG11652-RA 99..1455 22..1380 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:05:02 Download gff for BO04557.complete
Subject Subject Range Query Range Percent Splice Strand
3L 11694147..11694745 782..1380 99 <- Minus
3L 11694810..11695569 22..781 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:34:00 Download gff for BO04557.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 11687247..11687845 782..1380 99 <- Minus
arm_3L 11687910..11688669 22..781 100   Minus

BO04557.pep Sequence

Translation from 16 to 1396

> BO04557.pep
MLDVIQPSSNLPTSESTDIVVVRARPKKVFKPKARINRIPQELLDDPLLQ
QAIDRLPSNYNFEMHKTIWRIREMKAKRVALQLPEGLLMYAMVISDIVER
FTSADTVIMGDVTYGACCVDDYTAKALGADLLVHYGHSCLIPVDQTCGIK
VLYIFVDIKIDPLHFLDSVKLNFRPEVGQIALVSTIQFVTTLQAASTELK
AAGYDVIVPQAKPLSPGEILGCTSPQLPETTKMIIYLGDGRFHLESAMIA
NPLLKAYKYDPYEKKFTTEQYDHSAMQNLRLDAVQRAKKARRIGIILGTL
GRQGSSRVHRFLEKRLHAKGIETTTLLLSEIFPQKLALFADIDAFVQIAC
PRLSIDWGSAFSQPLLNPYELSVVLGDVEWTPHNSSPRNNAYPMDFYASG
SLGPWTPNFKPPAIGECENKPSADCCGRCTRAELEKDDSGKAAALDDLLD
FKKGASFLDH

BO04557.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:34:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG11652-PC 454 CG11652-PC 1..454 1..454 2363 100 Plus
CG11652-PB 454 CG11652-PB 1..454 1..454 2363 100 Plus
CG11652-PA 454 CG11652-PA 1..454 1..454 2363 100 Plus
CG7265-PA 469 CG7265-PA 36..369 59..396 254 25.1 Plus