Clone Sequence Records
BO04560.3prime Sequence
815 bp (814 high quality bases) assembled on 2005-12-01
> BO04560.3prime
ATGGTCTAGAAAGCTTGCACCATCATGCTTTCTCTTCTTGCCTCTGACTT
GCGACTCGTCTGCTTCCTTTTCGCCATCCTTGTCCTTGGCATTCACTGAT
GCAGCCGATTCGTTTGCATCACCATCGGCATCATCAATATCGGAATCCTC
TTCCTCGTCCTCCTCGCCAGCCTCGTCTTCGCCTTCCCAATCAGAGTTAT
CCTCTTCCAAATCGTCATTGTACACCTCCGACAGGGACACTTCACCATTC
GCCTCTTCGTCGCTATCATCGCTGTCGTCATCTTCGTCGGAAACTCCCAC
TTCGTCGGAATCGTTGCCGTTGACCTCATCATCATCATCGCCATCAGATT
GCACCTCCTCGTCGTTGCAATCAAATCCATCTAGGAAATTTAACGATGGC
AACATCTTGAAGATCTTCTCGCGGTAATTATCCACTTGAGTAGCGTCGTT
ATTAAACAAATCCAGAACAACCAGATTTTTAAACTCCTCCAGGGGCTTCA
GGGTTTCCAGATCCTTTATCTTGTTGCCAGACAAGTTGAGATATTGCAGT
TTGGGGCTAGTGGTCAGATAGTTGAGGCCACTCGAAATCCGATTGTCGGA
CAGTTCGAGCTTCTTTAAATTGGGCAGCTTGGGGAAACCTTTCAGTGTGG
TGAGACCCACGTTGATCAAGCTAAGCGATTCCAAGGCTGTGTATTCATCT
GTAAGGCCAACGATGCTTGTACTACGGCAGTTGTCCAGATTCAGCTCTGT
GATCTGATTTACTTTGCGTGCGCGTCTTTCCAGTTCTATTCTCTTCTCCA
TGTCGACTGATAACT
BO04560.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:07:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5784-PB | 786 | Mapmodulin-RB | 1..783 | 801..19 | 3915 | 100 | Minus |
CG5784-PA | 786 | Mapmodulin-RA | 1..783 | 801..19 | 3915 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:36:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mapmodulin-RA | 2073 | CG5784-RA | 397..1179 | 801..19 | 3915 | 100 | Minus |
Mapmodulin-RB | 2145 | CG5784-RB | 328..1110 | 801..19 | 3915 | 100 | Minus |
Mapmodulin-RD | 2379 | CG5784-RD | 397..904 | 801..294 | 2540 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:36:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 17868432..17868810 | 377..755 | 1895 | 100 | Plus |
2R | 25286936 | 2R | 17867326..17867561 | 60..295 | 1180 | 100 | Plus |
2R | 25286936 | 2R | 17868287..17868370 | 294..377 | 420 | 100 | Plus |
2R | 25286936 | 2R | 17871329..17871376 | 754..801 | 240 | 100 | Plus |
2R | 25286936 | 2R | 17867213..17867256 | 19..62 | 220 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 15:36:02 has no hits.
BO04560.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:06:00 Download gff for
BO04560.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5784-PB | 1..786 | 15..801 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:20:26 Download gff for
BO04560.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5784-PA | 1..786 | 15..801 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:33:51 Download gff for
BO04560.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mapmodulin-RB | 328..1113 | 15..801 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:29:49 Download gff for
BO04560.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mapmodulin-RB | 328..1113 | 15..801 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:29:49 Download gff for
BO04560.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 17867209..17867253 | 15..59 | 95 | <- | Plus |
2R | 17867326..17867559 | 60..293 | 100 | <- | Plus |
2R | 17868287..17868369 | 294..376 | 100 | <- | Plus |
2R | 17868432..17868808 | 377..753 | 100 | <- | Plus |
2R | 17871329..17871376 | 754..801 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:33:51 Download gff for
BO04560.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 13754714..13754758 | 15..59 | 95 | <- | Plus |
arm_2R | 13754831..13755064 | 60..293 | 100 | <- | Plus |
arm_2R | 13755792..13755874 | 294..376 | 100 | <- | Plus |
arm_2R | 13755937..13756313 | 377..753 | 100 | <- | Plus |
arm_2R | 13758834..13758881 | 754..801 | 100 | | Plus |
BO04560.5prime Sequence
815 bp (745 high quality bases) assembled on 2005-11-29
> BO04560.5prime
GAAGTTATCAGTCGACATGGAGAAGAGAATAGAACTGGAAAGACGCGCAC
GCAAAGTAAATCAGATCACAGAGCTGAATCTGGACAACTGCCGTAGTACA
AGCATCGTTGGCCTTACAGATGAATACACAGCCTTGGAATCGCTTAGCTT
GATCAACGTGGGTCTCACCACACTGAAAGGTTTCCCCAAGCTGCCCAATT
TAAAGAAGCTCGAACTGTCCGACAATCGGATTTCGAGTGGCCTCAACTAT
CTGACCACTAGCCCCAAACTGCAATATCTCAACTTGTCTGGCAACAAGAT
AAAGGATCTGGAAACCCTGAAGCCCCTGGAGGAGTTTAAAAATCTGGTTG
TTCTGGATTTGTTTAATAACGACGCTACTCAAGTGGATAATTACCGCGAG
AAGATCTTCAAGATGTTGCCATCGTTAAATTTCCTAGATGGATTTGATTG
CAACGACGAGGAGGTGCAATCTGATGGCGATGATGATGATGAGGTCAACG
GCAACGATTCCGACGAAGTGGGAGTTTCCGACGAAGATGACGACAGCGAT
GATAGCGACGAAGAGGCGAATGGTGAAGTGTCCCTGTCGGAGGTGTACAA
TGACGATTTGGAAGAGGATAACTCTGATTGGGAAGGCGAAGACGAGGCTG
GCGAGGAGGACGAGGAAGAGGATTCCGATATTGATGATGCCGATGGTGAT
GCAAACGAATCGGCTGCATCAGTGAATGCCAAGGACAAGGATGGCGAANA
GGAAGCAGACGAGTCGCAAGTCAGAGGCAAGAAGAGAAAGCATGATGGTG
CAAGCTTTCTAAACC
BO04560.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:07:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5784-PB | 786 | Mapmodulin-RB | 1..783 | 17..799 | 3896 | 99.8 | Plus |
CG5784-PA | 786 | Mapmodulin-RA | 1..783 | 17..799 | 3896 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 19:26:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mapmodulin-RA | 2073 | CG5784-RA | 397..1179 | 17..799 | 3904 | 99.9 | Plus |
Mapmodulin-RB | 2145 | CG5784-RB | 328..1110 | 17..799 | 3904 | 99.9 | Plus |
Mapmodulin-RD | 2379 | CG5784-RD | 397..904 | 17..524 | 2540 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 19:26:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 17868432..17868810 | 441..63 | 1895 | 100 | Minus |
2R | 25286936 | 2R | 17867326..17867561 | 758..523 | 1169 | 99.6 | Minus |
2R | 25286936 | 2R | 17868287..17868370 | 524..441 | 420 | 100 | Minus |
2R | 25286936 | 2R | 17871329..17871376 | 64..17 | 240 | 100 | Minus |
2R | 25286936 | 2R | 17867213..17867256 | 799..756 | 220 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-04 19:26:25 has no hits.
BO04560.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:06:01 Download gff for
BO04560.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5784-PB | 1..786 | 17..803 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:20:27 Download gff for
BO04560.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5784-PA | 1..786 | 17..803 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:17:11 Download gff for
BO04560.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mapmodulin-RB | 328..1113 | 17..803 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:32:55 Download gff for
BO04560.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mapmodulin-RB | 328..1113 | 17..803 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 21:32:55 Download gff for
BO04560.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 17871329..17871376 | 17..64 | 100 | | Minus |
2R | 17867209..17867253 | 759..803 | 95 | <- | Minus |
2R | 17867326..17867559 | 525..758 | 99 | <- | Minus |
2R | 17868287..17868369 | 442..524 | 100 | <- | Minus |
2R | 17868432..17868808 | 65..441 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:17:11 Download gff for
BO04560.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 13758834..13758881 | 17..64 | 100 | | Minus |
arm_2R | 13754714..13754758 | 759..803 | 95 | <- | Minus |
arm_2R | 13754831..13755064 | 525..758 | 99 | <- | Minus |
arm_2R | 13755792..13755874 | 442..524 | 100 | <- | Minus |
arm_2R | 13755937..13756313 | 65..441 | 100 | <- | Minus |
BO04560.complete Sequence
817 bp (817 high quality bases) assembled on 2005-09-08
GenBank Submission: FJ629798
> BO04560.complete
GAAGTTATCAGTCGACATGGAGAAGAGAATAGAACTGGAAAGACGCGCAC
GCAAAGTAAATCAGATCACAGAGCTGAATCTGGACAACTGCCGTAGTACA
AGCATCGTTGGCCTTACAGATGAATACACAGCCTTGGAATCGCTTAGCTT
GATCAACGTGGGTCTCACCACACTGAAAGGTTTCCCCAAGCTGCCCAATT
TAAAGAAGCTCGAACTGTCCGACAATCGGATTTCGAGTGGCCTCAACTAT
CTGACCACTAGCCCCAAACTGCAATATCTCAACTTGTCTGGCAACAAGAT
AAAGGATCTGGAAACCCTGAAGCCCCTGGAGGAGTTTAAAAATCTGGTTG
TTCTGGATTTGTTTAATAACGACGCTACTCAAGTGGATAATTACCGCGAG
AAGATCTTCAAGATGTTGCCATCGTTAAATTTCCTAGATGGATTTGATTG
CAACGACGAGGAGGTGCAATCTGATGGCGATGATGATGATGAGGTCAACG
GCAACGATTCCGACGAAGTGGGAGTTTCCGACGAAGATGACGACAGCGAT
GATAGCGACGAAGAGGCGAATGGTGAAGTGTCCCTGTCGGAGGTGTACAA
TGACGATTTGGAAGAGGATAACTCTGATTGGGAAGGCGAAGACGAGGCTG
GCGAGGAGGACGAGGAAGAGGATTCCGATATTGATGATGCCGATGGTGAT
GCAAACGAATCGGCTGCATCAGTGAATGCCAAGGACAAGGATGGCGAAAA
GGAAGCAGACGAGTCGCAAGTCAGAGGCAAGAAGAGAAAGCATGATGGTG
CAAGCTTTCTAGACCAT
BO04560.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:50:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mapmodulin-RA | 786 | CG5784-PA | 1..783 | 17..799 | 3915 | 100 | Plus |
Mapmodulin-RB | 786 | CG5784-PB | 1..783 | 17..799 | 3915 | 100 | Plus |
Mapmodulin-RD | 1092 | CG5784-PD | 1..508 | 17..524 | 2540 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:50:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mapmodulin-RA | 2073 | CG5784-RA | 397..1179 | 17..799 | 3915 | 100 | Plus |
Mapmodulin-RB | 2145 | CG5784-RB | 328..1110 | 17..799 | 3915 | 100 | Plus |
Mapmodulin-RD | 2379 | CG5784-RD | 397..904 | 17..524 | 2540 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:50:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 17868432..17868810 | 441..63 | 1895 | 100 | Minus |
2R | 25286936 | 2R | 17867326..17867561 | 758..523 | 1180 | 100 | Minus |
2R | 25286936 | 2R | 17868287..17868370 | 524..441 | 420 | 100 | Minus |
2R | 25286936 | 2R | 17871329..17871376 | 64..17 | 240 | 100 | Minus |
2R | 25286936 | 2R | 17867213..17867256 | 799..756 | 220 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 15:50:29 has no hits.
BO04560.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:02:07 Download gff for
BO04560.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mapmodulin-RA | 1..786 | 17..803 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:34:29 Download gff for
BO04560.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mapmodulin-RA | 392..1177 | 17..803 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 00:05:06 Download gff for
BO04560.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mapmodulin-RB | 328..1110 | 17..801 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:02:07 Download gff for
BO04560.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mapmodulin-RA | 392..1177 | 17..803 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:50:15 Download gff for
BO04560.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mapmodulin-RB | 328..1110 | 17..801 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:50:15 Download gff for
BO04560.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 17868287..17868369 | 442..524 | 100 | <- | Minus |
2R | 17867211..17867253 | 759..801 | 95 | <- | Minus |
2R | 17867326..17867559 | 525..758 | 100 | <- | Minus |
2R | 17868432..17868808 | 65..441 | 100 | <- | Minus |
2R | 17871329..17871376 | 17..64 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 00:05:06 Download gff for
BO04560.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 13754716..13754758 | 759..801 | 95 | <- | Minus |
arm_2R | 13754831..13755064 | 525..758 | 100 | <- | Minus |
arm_2R | 13755792..13755874 | 442..524 | 100 | <- | Minus |
arm_2R | 13755937..13756313 | 65..441 | 100 | <- | Minus |
arm_2R | 13758834..13758881 | 17..64 | 100 | | Minus |
BO04560.pep Sequence
Translation from 16 to 817
> BO04560.pep
MEKRIELERRARKVNQITELNLDNCRSTSIVGLTDEYTALESLSLINVGL
TTLKGFPKLPNLKKLELSDNRISSGLNYLTTSPKLQYLNLSGNKIKDLET
LKPLEEFKNLVVLDLFNNDATQVDNYREKIFKMLPSLNFLDGFDCNDEEV
QSDGDDDDEVNGNDSDEVGVSDEDDDSDDSDEEANGEVSLSEVYNDDLEE
DNSDWEGEDEAGEEDEEEDSDIDDADGDANESAASVNAKDKDGEKEADES
QVRGKKRKHDGASFLDH
BO04560.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:17:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mapmodulin-PA | 261 | CG5784-PA | 1..261 | 1..261 | 1342 | 100 | Plus |
Mapmodulin-PB | 261 | CG5784-PB | 1..261 | 1..261 | 1342 | 100 | Plus |
Mapmodulin-PD | 363 | CG5784-PD | 1..363 | 1..261 | 888 | 57.3 | Plus |
Mapmodulin-PC | 363 | CG5784-PC | 1..363 | 1..261 | 888 | 57.3 | Plus |
l(2)01289-PG | 1191 | CG9432-PG | 852..968 | 146..260 | 192 | 34.2 | Plus |