Clone BO04560 Report

Search the DGRC for BO04560

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:45
Well:60
Vector:pDNR-Dual
Associated Gene/TranscriptMapmodulin-RA
Protein status:BO04560.pep: validated full length
Sequenced Size:817

Clone Sequence Records

BO04560.3prime Sequence

815 bp (814 high quality bases) assembled on 2005-12-01

> BO04560.3prime
ATGGTCTAGAAAGCTTGCACCATCATGCTTTCTCTTCTTGCCTCTGACTT
GCGACTCGTCTGCTTCCTTTTCGCCATCCTTGTCCTTGGCATTCACTGAT
GCAGCCGATTCGTTTGCATCACCATCGGCATCATCAATATCGGAATCCTC
TTCCTCGTCCTCCTCGCCAGCCTCGTCTTCGCCTTCCCAATCAGAGTTAT
CCTCTTCCAAATCGTCATTGTACACCTCCGACAGGGACACTTCACCATTC
GCCTCTTCGTCGCTATCATCGCTGTCGTCATCTTCGTCGGAAACTCCCAC
TTCGTCGGAATCGTTGCCGTTGACCTCATCATCATCATCGCCATCAGATT
GCACCTCCTCGTCGTTGCAATCAAATCCATCTAGGAAATTTAACGATGGC
AACATCTTGAAGATCTTCTCGCGGTAATTATCCACTTGAGTAGCGTCGTT
ATTAAACAAATCCAGAACAACCAGATTTTTAAACTCCTCCAGGGGCTTCA
GGGTTTCCAGATCCTTTATCTTGTTGCCAGACAAGTTGAGATATTGCAGT
TTGGGGCTAGTGGTCAGATAGTTGAGGCCACTCGAAATCCGATTGTCGGA
CAGTTCGAGCTTCTTTAAATTGGGCAGCTTGGGGAAACCTTTCAGTGTGG
TGAGACCCACGTTGATCAAGCTAAGCGATTCCAAGGCTGTGTATTCATCT
GTAAGGCCAACGATGCTTGTACTACGGCAGTTGTCCAGATTCAGCTCTGT
GATCTGATTTACTTTGCGTGCGCGTCTTTCCAGTTCTATTCTCTTCTCCA
TGTCGACTGATAACT

BO04560.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:07:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG5784-PB 786 Mapmodulin-RB 1..783 801..19 3915 100 Minus
CG5784-PA 786 Mapmodulin-RA 1..783 801..19 3915 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:36:03
Subject Length Description Subject Range Query Range Score Percent Strand
Mapmodulin-RA 2073 CG5784-RA 397..1179 801..19 3915 100 Minus
Mapmodulin-RB 2145 CG5784-RB 328..1110 801..19 3915 100 Minus
Mapmodulin-RD 2379 CG5784-RD 397..904 801..294 2540 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:36:00
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 17868432..17868810 377..755 1895 100 Plus
2R 25286936 2R 17867326..17867561 60..295 1180 100 Plus
2R 25286936 2R 17868287..17868370 294..377 420 100 Plus
2R 25286936 2R 17871329..17871376 754..801 240 100 Plus
2R 25286936 2R 17867213..17867256 19..62 220 100 Plus
Blast to na_te.dros performed on 2015-02-11 15:36:02 has no hits.

BO04560.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:06:00 Download gff for BO04560.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5784-PB 1..786 15..801 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:20:26 Download gff for BO04560.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5784-PA 1..786 15..801 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:33:51 Download gff for BO04560.3prime
Subject Subject Range Query Range Percent Splice Strand
Mapmodulin-RB 328..1113 15..801 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:29:49 Download gff for BO04560.3prime
Subject Subject Range Query Range Percent Splice Strand
Mapmodulin-RB 328..1113 15..801 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:29:49 Download gff for BO04560.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 17867209..17867253 15..59 95 <- Plus
2R 17867326..17867559 60..293 100 <- Plus
2R 17868287..17868369 294..376 100 <- Plus
2R 17868432..17868808 377..753 100 <- Plus
2R 17871329..17871376 754..801 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:33:51 Download gff for BO04560.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 13754714..13754758 15..59 95 <- Plus
arm_2R 13754831..13755064 60..293 100 <- Plus
arm_2R 13755792..13755874 294..376 100 <- Plus
arm_2R 13755937..13756313 377..753 100 <- Plus
arm_2R 13758834..13758881 754..801 100   Plus

BO04560.5prime Sequence

815 bp (745 high quality bases) assembled on 2005-11-29

> BO04560.5prime
GAAGTTATCAGTCGACATGGAGAAGAGAATAGAACTGGAAAGACGCGCAC
GCAAAGTAAATCAGATCACAGAGCTGAATCTGGACAACTGCCGTAGTACA
AGCATCGTTGGCCTTACAGATGAATACACAGCCTTGGAATCGCTTAGCTT
GATCAACGTGGGTCTCACCACACTGAAAGGTTTCCCCAAGCTGCCCAATT
TAAAGAAGCTCGAACTGTCCGACAATCGGATTTCGAGTGGCCTCAACTAT
CTGACCACTAGCCCCAAACTGCAATATCTCAACTTGTCTGGCAACAAGAT
AAAGGATCTGGAAACCCTGAAGCCCCTGGAGGAGTTTAAAAATCTGGTTG
TTCTGGATTTGTTTAATAACGACGCTACTCAAGTGGATAATTACCGCGAG
AAGATCTTCAAGATGTTGCCATCGTTAAATTTCCTAGATGGATTTGATTG
CAACGACGAGGAGGTGCAATCTGATGGCGATGATGATGATGAGGTCAACG
GCAACGATTCCGACGAAGTGGGAGTTTCCGACGAAGATGACGACAGCGAT
GATAGCGACGAAGAGGCGAATGGTGAAGTGTCCCTGTCGGAGGTGTACAA
TGACGATTTGGAAGAGGATAACTCTGATTGGGAAGGCGAAGACGAGGCTG
GCGAGGAGGACGAGGAAGAGGATTCCGATATTGATGATGCCGATGGTGAT
GCAAACGAATCGGCTGCATCAGTGAATGCCAAGGACAAGGATGGCGAANA
GGAAGCAGACGAGTCGCAAGTCAGAGGCAAGAAGAGAAAGCATGATGGTG
CAAGCTTTCTAAACC

BO04560.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:07:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG5784-PB 786 Mapmodulin-RB 1..783 17..799 3896 99.8 Plus
CG5784-PA 786 Mapmodulin-RA 1..783 17..799 3896 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 19:26:28
Subject Length Description Subject Range Query Range Score Percent Strand
Mapmodulin-RA 2073 CG5784-RA 397..1179 17..799 3904 99.9 Plus
Mapmodulin-RB 2145 CG5784-RB 328..1110 17..799 3904 99.9 Plus
Mapmodulin-RD 2379 CG5784-RD 397..904 17..524 2540 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 19:26:23
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 17868432..17868810 441..63 1895 100 Minus
2R 25286936 2R 17867326..17867561 758..523 1169 99.6 Minus
2R 25286936 2R 17868287..17868370 524..441 420 100 Minus
2R 25286936 2R 17871329..17871376 64..17 240 100 Minus
2R 25286936 2R 17867213..17867256 799..756 220 100 Minus
Blast to na_te.dros performed on 2015-02-04 19:26:25 has no hits.

BO04560.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:06:01 Download gff for BO04560.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5784-PB 1..786 17..803 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:20:27 Download gff for BO04560.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5784-PA 1..786 17..803 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:17:11 Download gff for BO04560.5prime
Subject Subject Range Query Range Percent Splice Strand
Mapmodulin-RB 328..1113 17..803 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:32:55 Download gff for BO04560.5prime
Subject Subject Range Query Range Percent Splice Strand
Mapmodulin-RB 328..1113 17..803 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 21:32:55 Download gff for BO04560.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 17871329..17871376 17..64 100   Minus
2R 17867209..17867253 759..803 95 <- Minus
2R 17867326..17867559 525..758 99 <- Minus
2R 17868287..17868369 442..524 100 <- Minus
2R 17868432..17868808 65..441 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:17:11 Download gff for BO04560.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 13758834..13758881 17..64 100   Minus
arm_2R 13754714..13754758 759..803 95 <- Minus
arm_2R 13754831..13755064 525..758 99 <- Minus
arm_2R 13755792..13755874 442..524 100 <- Minus
arm_2R 13755937..13756313 65..441 100 <- Minus

BO04560.complete Sequence

817 bp (817 high quality bases) assembled on 2005-09-08

GenBank Submission: FJ629798

> BO04560.complete
GAAGTTATCAGTCGACATGGAGAAGAGAATAGAACTGGAAAGACGCGCAC
GCAAAGTAAATCAGATCACAGAGCTGAATCTGGACAACTGCCGTAGTACA
AGCATCGTTGGCCTTACAGATGAATACACAGCCTTGGAATCGCTTAGCTT
GATCAACGTGGGTCTCACCACACTGAAAGGTTTCCCCAAGCTGCCCAATT
TAAAGAAGCTCGAACTGTCCGACAATCGGATTTCGAGTGGCCTCAACTAT
CTGACCACTAGCCCCAAACTGCAATATCTCAACTTGTCTGGCAACAAGAT
AAAGGATCTGGAAACCCTGAAGCCCCTGGAGGAGTTTAAAAATCTGGTTG
TTCTGGATTTGTTTAATAACGACGCTACTCAAGTGGATAATTACCGCGAG
AAGATCTTCAAGATGTTGCCATCGTTAAATTTCCTAGATGGATTTGATTG
CAACGACGAGGAGGTGCAATCTGATGGCGATGATGATGATGAGGTCAACG
GCAACGATTCCGACGAAGTGGGAGTTTCCGACGAAGATGACGACAGCGAT
GATAGCGACGAAGAGGCGAATGGTGAAGTGTCCCTGTCGGAGGTGTACAA
TGACGATTTGGAAGAGGATAACTCTGATTGGGAAGGCGAAGACGAGGCTG
GCGAGGAGGACGAGGAAGAGGATTCCGATATTGATGATGCCGATGGTGAT
GCAAACGAATCGGCTGCATCAGTGAATGCCAAGGACAAGGATGGCGAAAA
GGAAGCAGACGAGTCGCAAGTCAGAGGCAAGAAGAGAAAGCATGATGGTG
CAAGCTTTCTAGACCAT

BO04560.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:50:30
Subject Length Description Subject Range Query Range Score Percent Strand
Mapmodulin-RA 786 CG5784-PA 1..783 17..799 3915 100 Plus
Mapmodulin-RB 786 CG5784-PB 1..783 17..799 3915 100 Plus
Mapmodulin-RD 1092 CG5784-PD 1..508 17..524 2540 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:50:33
Subject Length Description Subject Range Query Range Score Percent Strand
Mapmodulin-RA 2073 CG5784-RA 397..1179 17..799 3915 100 Plus
Mapmodulin-RB 2145 CG5784-RB 328..1110 17..799 3915 100 Plus
Mapmodulin-RD 2379 CG5784-RD 397..904 17..524 2540 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:50:28
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 17868432..17868810 441..63 1895 100 Minus
2R 25286936 2R 17867326..17867561 758..523 1180 100 Minus
2R 25286936 2R 17868287..17868370 524..441 420 100 Minus
2R 25286936 2R 17871329..17871376 64..17 240 100 Minus
2R 25286936 2R 17867213..17867256 799..756 220 100 Minus
Blast to na_te.dros performed on 2014-11-26 15:50:29 has no hits.

BO04560.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:02:07 Download gff for BO04560.complete
Subject Subject Range Query Range Percent Splice Strand
Mapmodulin-RA 1..786 17..803 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:34:29 Download gff for BO04560.complete
Subject Subject Range Query Range Percent Splice Strand
Mapmodulin-RA 392..1177 17..803 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 00:05:06 Download gff for BO04560.complete
Subject Subject Range Query Range Percent Splice Strand
Mapmodulin-RB 328..1110 17..801 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:02:07 Download gff for BO04560.complete
Subject Subject Range Query Range Percent Splice Strand
Mapmodulin-RA 392..1177 17..803 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:50:15 Download gff for BO04560.complete
Subject Subject Range Query Range Percent Splice Strand
Mapmodulin-RB 328..1110 17..801 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:50:15 Download gff for BO04560.complete
Subject Subject Range Query Range Percent Splice Strand
2R 17868287..17868369 442..524 100 <- Minus
2R 17867211..17867253 759..801 95 <- Minus
2R 17867326..17867559 525..758 100 <- Minus
2R 17868432..17868808 65..441 100 <- Minus
2R 17871329..17871376 17..64 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 00:05:06 Download gff for BO04560.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 13754716..13754758 759..801 95 <- Minus
arm_2R 13754831..13755064 525..758 100 <- Minus
arm_2R 13755792..13755874 442..524 100 <- Minus
arm_2R 13755937..13756313 65..441 100 <- Minus
arm_2R 13758834..13758881 17..64 100   Minus

BO04560.pep Sequence

Translation from 16 to 817

> BO04560.pep
MEKRIELERRARKVNQITELNLDNCRSTSIVGLTDEYTALESLSLINVGL
TTLKGFPKLPNLKKLELSDNRISSGLNYLTTSPKLQYLNLSGNKIKDLET
LKPLEEFKNLVVLDLFNNDATQVDNYREKIFKMLPSLNFLDGFDCNDEEV
QSDGDDDDEVNGNDSDEVGVSDEDDDSDDSDEEANGEVSLSEVYNDDLEE
DNSDWEGEDEAGEEDEEEDSDIDDADGDANESAASVNAKDKDGEKEADES
QVRGKKRKHDGASFLDH

BO04560.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:17:53
Subject Length Description Subject Range Query Range Score Percent Strand
Mapmodulin-PA 261 CG5784-PA 1..261 1..261 1342 100 Plus
Mapmodulin-PB 261 CG5784-PB 1..261 1..261 1342 100 Plus
Mapmodulin-PD 363 CG5784-PD 1..363 1..261 888 57.3 Plus
Mapmodulin-PC 363 CG5784-PC 1..363 1..261 888 57.3 Plus
l(2)01289-PG 1191 CG9432-PG 852..968 146..260 192 34.2 Plus