Clone BO04561 Report

Search the DGRC for BO04561

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:45
Well:61
Vector:pDNR-Dual
Associated Gene/TranscriptCG40160-RA
Protein status:BO04561.pep:
Sequenced Size:1297

Clone Sequence Records

BO04561.3prime Sequence

846 bp (789 high quality bases) assembled on 2005-12-01

> BO04561.3prime
ATGGTCTAGAAAGCTTGCTGCGGTGTACACAGCCGTTCCGAAGCCATTGG
TTAACATTTGCTGGTCAATCCAACCTCTGACCAAGGCTACGTTGGCATAA
GCTGCTGGAACTTCATCATTACATCCGATTCCCCAAGCAACTATACCAGT
CTGTTGATATCGGGATTCACGTGTACTTCCCCTAGGACAAGCTAGTGGAG
CCCCGCCATCCCCTTGACAGGTATCAATGCCACGCTGTCCACCCGCGCAT
ATGAATGACCTATCCAATGCAAACTTTGGTCCAAGTCGAGTGCCTCTAAG
TCGTGTCTGACAACTGTTAAACTCAACAATGGGCAATGGAACACGTTTCA
TTAAGGAGCTATATTTGCCCAAAGAACCAAAAGCATCTTTTCCCCAGCCG
GTGGAAAAACATGTGTTACCGGGCTGCGGAATATCATCTTGTTGAGGTAA
ACATATAACATTAATGTGATCATCCAAAGTAACCGGCTGACTTAGAATTA
CAAGTGCGAAATCATAAGCTATGCTTCTTCTGTTATAATCTGGGTGCAAT
ATAACAGTTTGAACCGATCTTTCTTGATAGGGTAGACGCTCTTTCATTGT
TTGTGTATCCCACTCTCCAGCTCGGACAGTAAACGATCCTGTTCTAAGCG
ACTCAACACAGTGCGCAGCGGTCAAAACCACCTGTTTATGTATAAGAGAT
CCAGCACAGAAATAGCTTAAATTTCCAGAATGCAATAATGCTACCGTCCA
TGGAAACTCGCCAAAACCCGCTTCATTTTGCGATACTCCGGAAAGAGTAA
AATCCAATCCACCTGTATTGCGAACACCACAGCCTCTTGGCTGGTT

BO04561.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed on 2007-05-06 12:07:47 has no hits.
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 19:26:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG40160-RH 4869 CG40160-RH 520..1347 846..19 4140 100 Minus
CG40160-RG 1478 CG40160-RG 556..1383 846..19 4140 100 Minus
CG40160-RF 1422 CG40160-RF 500..1327 846..19 4140 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 19:26:31
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 26225084..26225911 846..19 4140 100 Minus
2R 25286936 2R 3468955..3469767 19..846 3055 92.3 Plus
2R 25286936 2R 3335571..3336083 545..19 1995 92.8 Minus
2R 25286936 2R 3335294..3335566 846..577 980 92.3 Minus
3L 28110227 3L 26223678..26223790 443..332 335 88.5 Minus
Blast to na_te.dros performed on 2015-02-04 19:26:34 has no hits.

BO04561.3prime Sim4 Records

Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:17:12 Download gff for BO04561.3prime
Subject Subject Range Query Range Percent Splice Strand
CG40160-RF 500..1333 11..846 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:33:04 Download gff for BO04561.3prime
Subject Subject Range Query Range Percent Splice Strand
CG40160-RF 500..1333 11..846 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 21:33:04 Download gff for BO04561.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 26225084..26225917 11..846 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:17:12 Download gff for BO04561.3prime
Subject Subject Range Query Range Percent Splice Strand
3LHet 1571634..1572467 11..846 99   Minus

BO04561.5prime Sequence

848 bp (762 high quality bases) assembled on 2005-11-29

> BO04561.5prime
GAAGTTATCAGTCGACATGAATGGCTATACAAATAATTGTATATCGATAT
GTGCAATTTTATTAATAGGCGTATCTTCACCCGCTCCTCAGCAGAACATT
AACGCACAGAAAAACATTGAGGAAATATTTAATACTAATAGTAATCTTTC
AGCGCAAAAAGAATCCGGAATCGGATTAGTGATTACCCCCGATCCTATGG
AAACTATAAGTCAACAGTCAAATTTTACTTCAACTAGTGGCAAAACTGCA
ACTTGTAATTGCGTCCCATATTATAAATGTGATCCATCAACAAAGAGTTT
CACTGAAGATGGCTCTTTTGACGGATTTGGTGTTATAGATATTCGATTTA
ACGACGATGATCCGATATGCCCGGCATCTGTAGACGTATGTTGTGATGCT
AATAGGACGCTTAATAAGACGTTGAATCCGACACCCTTGGATCAAAGGCC
AAACCAGCCAAGAGGCTGTGGTGTTCGCAATACAGGTGGATTGGATTTTA
CTCTTTCCGGAGTATCGCAAAATGAAGCGGGTTTTGGCGAGTTTCCATGG
ACGGTAGCATTATTGCATTCTGGAAATTTAAGCTATTTCTGTGCTGGATC
TCTTATACATAAACAGGTGGTTTTGACCGCTGCGCACTGTGTTGAGTCGC
TTAGAACAGGATCGTTTACTGTCCGAGCTGGAGAGTGGGATACACAAACA
ATGAAAGAGCGTCTACCCTATCAAGAAAGATCGGTTCAAACTGTTATATT
GCACCCAGATTATAACAGAAGAAGCATAGCTTATGATTTCGCACTTGTAA
TTCTAAGTCAGCCGGTTACTTTGGATGATCACATTAATGTTATATGTT

BO04561.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed on 2007-05-06 12:07:48 has no hits.
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:45:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG40160-RH 4869 CG40160-RH 85..916 17..848 4160 100 Plus
CG40160-RG 1478 CG40160-RG 121..952 17..848 4160 100 Plus
CG40160-RF 1422 CG40160-RF 65..896 17..848 4160 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:45:54
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 26224649..26225480 17..848 4160 100 Plus
2R 25286936 2R 3469369..3470199 848..20 3500 95.6 Minus
2R 25286936 2R 3334862..3335566 20..721 2945 95.2 Plus
2R 25286936 2R 3335571..3335666 753..848 465 99 Plus
Blast to na_te.dros performed on 2015-02-11 04:45:56 has no hits.

BO04561.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:13:10 Download gff for BO04561.5prime
Subject Subject Range Query Range Percent Splice Strand
CG40160-RF 58..896 9..848 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:27:20 Download gff for BO04561.5prime
Subject Subject Range Query Range Percent Splice Strand
CG40160-RF 58..896 9..848 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 09:27:20 Download gff for BO04561.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 26224649..26225480 17..848 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:13:10 Download gff for BO04561.5prime
Subject Subject Range Query Range Percent Splice Strand
3LHet 1571199..1572030 17..848 100   Plus

BO04561.complete Sequence

1297 bp (1297 high quality bases) assembled on 2005-09-08

GenBank Submission: FJ629799

> BO04561.complete
GAAGTTATCAGTCGACATGAATGGCTATACAAATAATTGTATATCGATAT
GTGCAATTTTATTAATAGGCGTATCTTCACCCGCTCCTCAGCAGAACATT
AACGCACAGAAAAACATTGAGGAAATATTTAATACTAATAGTAATCTTTC
AGCGCAAAAAGAATCCGGAATCGGATTAGTGATTACCCCCGATCCTATGG
AAACTATAAGTCAACAGTCAAATTTTACTTCAACTAGTGGCAAAACTGCA
ACTTGTAATTGCGTCCCATATTATAAATGTGATCCATCAACAAAGAGTTT
CACTGAAGATGGCTCTTTTGACGGATTTGGTGTTATAGATATTCGATTTA
ACGACGATGATCCGATATGCCCGGCATCTGTAGACGTATGTTGTGATGCT
AATAGGACGCTTAATAAGACGTTGAATCCGACACCCTTGGATCAAAGGCC
AAACCAGCCAAGAGGCTGTGGTGTTCGCAATACAGGTGGATTGGATTTTA
CTCTTTCCGGAGTATCGCAAAATGAAGCGGGTTTTGGCGAGTTTCCATGG
ACGGTAGCATTATTGCATTCTGGAAATTTAAGCTATTTCTGTGCTGGATC
TCTTATACATAAACAGGTGGTTTTGACCGCTGCGCACTGTGTTGAGTCGC
TTAGAACAGGATCGTTTACTGTCCGAGCTGGAGAGTGGGATACACAAACA
ATGAAAGAGCGTCTACCCTATCAAGAAAGATCGGTTCAAACTGTTATATT
GCACCCAGATTATAACAGAAGAAGCATAGCTTATGATTTCGCACTTGTAA
TTCTAAGTCAGCCGGTTACTTTGGATGATCACATTAATGTTATATGTTTA
CCTCAACAAGATGATATTCCGCAGCCCGGTAACACATGTTTTTCCACCGG
CTGGGGAAAAGATGCTTTTGGTTCTTTGGGCAAATATAGCTCCTTAATGA
AACGTGTTCCATTGCCCATTGTTGAGTTTAACAGTTGTCAGACACGACTT
AGAGGCACTCGACTTGGACCAAAGTTTGCATTGGATAGGTCATTCATATG
CGCGGGTGGACAGCGTGGCATTGATACCTGTCAAGGGGATGGCGGGGCTC
CACTAGCTTGTCCTAGGGGAAGTACACGTGAATCCCGATATCAACAGACT
GGTATAGTTGCTTGGGGAATCGGATGTAATGATGAAGTTCCAGCAGCTTA
TGCCAACGTAGCCTTGGTCAGAGGTTGGATTGACCAGCAAATGTTAACCA
ATGGCTTCGGAACGGCTGTGTACACCGCAGCAAGCTTTCTAGACCAT

BO04561.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 19:39:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG40160-RH 1266 CG40160-PH 1..1263 17..1279 6315 100 Plus
CG40160-RG 1266 CG40160-PG 1..1263 17..1279 6315 100 Plus
CG40160-RF 1266 CG40160-PF 1..1263 17..1279 6315 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 19:39:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG40160-RH 4869 CG40160-RH 85..1347 17..1279 6315 100 Plus
CG40160-RG 1478 CG40160-RG 121..1383 17..1279 6315 100 Plus
CG40160-RF 1422 CG40160-RF 65..1327 17..1279 6315 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 19:39:02
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 26224649..26225911 17..1279 6315 100 Plus
2R 25286936 2R 3468955..3470199 1279..20 5020 93.9 Minus
2R 25286936 2R 3334862..3335566 20..721 2945 95.2 Plus
2R 25286936 2R 3335571..3336083 753..1279 1995 92.8 Plus
3L 28110227 3L 26223678..26223790 855..966 335 88.5 Plus
Blast to na_te.dros performed on 2014-11-27 19:39:04 has no hits.

BO04561.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:40:21 Download gff for BO04561.complete
Subject Subject Range Query Range Percent Splice Strand
CG40160-RB 85..1350 17..1282 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:09:30 Download gff for BO04561.complete
Subject Subject Range Query Range Percent Splice Strand
CG40160-RB 86..1354 17..1287 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:57:44 Download gff for BO04561.complete
Subject Subject Range Query Range Percent Splice Strand
CG40160-RF 65..1327 17..1281 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:40:21 Download gff for BO04561.complete
Subject Subject Range Query Range Percent Splice Strand
CG40160-RB 86..1354 17..1287 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:05:37 Download gff for BO04561.complete
Subject Subject Range Query Range Percent Splice Strand
CG40160-RF 65..1327 17..1281 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:05:37 Download gff for BO04561.complete
Subject Subject Range Query Range Percent Splice Strand
3L 26224649..26225911 17..1281 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:57:44 Download gff for BO04561.complete
Subject Subject Range Query Range Percent Splice Strand
3LHet 1571199..1572461 17..1281 99   Plus

BO04561.pep Sequence

Translation from 16 to 1297

> BO04561.pep
MNGYTNNCISICAILLIGVSSPAPQQNINAQKNIEEIFNTNSNLSAQKES
GIGLVITPDPMETISQQSNFTSTSGKTATCNCVPYYKCDPSTKSFTEDGS
FDGFGVIDIRFNDDDPICPASVDVCCDANRTLNKTLNPTPLDQRPNQPRG
CGVRNTGGLDFTLSGVSQNEAGFGEFPWTVALLHSGNLSYFCAGSLIHKQ
VVLTAAHCVESLRTGSFTVRAGEWDTQTMKERLPYQERSVQTVILHPDYN
RRSIAYDFALVILSQPVTLDDHINVICLPQQDDIPQPGNTCFSTGWGKDA
FGSLGKYSSLMKRVPLPIVEFNSCQTRLRGTRLGPKFALDRSFICAGGQR
GIDTCQGDGGAPLACPRGSTRESRYQQTGIVAWGIGCNDEVPAAYANVAL
VRGWIDQQMLTNGFGTAVYTAASFLDH

BO04561.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:33:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG40160-PH 421 CG40160-PH 1..421 1..421 2262 100 Plus
CG40160-PG 421 CG40160-PG 1..421 1..421 2262 100 Plus
CG40160-PF 421 CG40160-PF 1..421 1..421 2262 100 Plus
CG40160-PE 421 CG40160-PE 1..421 1..421 2262 100 Plus
CG40160-PD 421 CG40160-PD 1..421 1..421 2262 100 Plus