Clone Sequence Records
BO04561.3prime Sequence
846 bp (789 high quality bases) assembled on 2005-12-01
> BO04561.3prime
ATGGTCTAGAAAGCTTGCTGCGGTGTACACAGCCGTTCCGAAGCCATTGG
TTAACATTTGCTGGTCAATCCAACCTCTGACCAAGGCTACGTTGGCATAA
GCTGCTGGAACTTCATCATTACATCCGATTCCCCAAGCAACTATACCAGT
CTGTTGATATCGGGATTCACGTGTACTTCCCCTAGGACAAGCTAGTGGAG
CCCCGCCATCCCCTTGACAGGTATCAATGCCACGCTGTCCACCCGCGCAT
ATGAATGACCTATCCAATGCAAACTTTGGTCCAAGTCGAGTGCCTCTAAG
TCGTGTCTGACAACTGTTAAACTCAACAATGGGCAATGGAACACGTTTCA
TTAAGGAGCTATATTTGCCCAAAGAACCAAAAGCATCTTTTCCCCAGCCG
GTGGAAAAACATGTGTTACCGGGCTGCGGAATATCATCTTGTTGAGGTAA
ACATATAACATTAATGTGATCATCCAAAGTAACCGGCTGACTTAGAATTA
CAAGTGCGAAATCATAAGCTATGCTTCTTCTGTTATAATCTGGGTGCAAT
ATAACAGTTTGAACCGATCTTTCTTGATAGGGTAGACGCTCTTTCATTGT
TTGTGTATCCCACTCTCCAGCTCGGACAGTAAACGATCCTGTTCTAAGCG
ACTCAACACAGTGCGCAGCGGTCAAAACCACCTGTTTATGTATAAGAGAT
CCAGCACAGAAATAGCTTAAATTTCCAGAATGCAATAATGCTACCGTCCA
TGGAAACTCGCCAAAACCCGCTTCATTTTGCGATACTCCGGAAAGAGTAA
AATCCAATCCACCTGTATTGCGAACACCACAGCCTCTTGGCTGGTT
BO04561.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed on 2007-05-06 12:07:47 has no hits.
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 19:26:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG40160-RH | 4869 | CG40160-RH | 520..1347 | 846..19 | 4140 | 100 | Minus |
CG40160-RG | 1478 | CG40160-RG | 556..1383 | 846..19 | 4140 | 100 | Minus |
CG40160-RF | 1422 | CG40160-RF | 500..1327 | 846..19 | 4140 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 19:26:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 26225084..26225911 | 846..19 | 4140 | 100 | Minus |
2R | 25286936 | 2R | 3468955..3469767 | 19..846 | 3055 | 92.3 | Plus |
2R | 25286936 | 2R | 3335571..3336083 | 545..19 | 1995 | 92.8 | Minus |
2R | 25286936 | 2R | 3335294..3335566 | 846..577 | 980 | 92.3 | Minus |
3L | 28110227 | 3L | 26223678..26223790 | 443..332 | 335 | 88.5 | Minus |
Blast to na_te.dros performed on 2015-02-04 19:26:34 has no hits.
BO04561.3prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:17:12 Download gff for
BO04561.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG40160-RF | 500..1333 | 11..846 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:33:04 Download gff for
BO04561.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG40160-RF | 500..1333 | 11..846 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 21:33:04 Download gff for
BO04561.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 26225084..26225917 | 11..846 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:17:12 Download gff for
BO04561.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3LHet | 1571634..1572467 | 11..846 | 99 | | Minus |
BO04561.5prime Sequence
848 bp (762 high quality bases) assembled on 2005-11-29
> BO04561.5prime
GAAGTTATCAGTCGACATGAATGGCTATACAAATAATTGTATATCGATAT
GTGCAATTTTATTAATAGGCGTATCTTCACCCGCTCCTCAGCAGAACATT
AACGCACAGAAAAACATTGAGGAAATATTTAATACTAATAGTAATCTTTC
AGCGCAAAAAGAATCCGGAATCGGATTAGTGATTACCCCCGATCCTATGG
AAACTATAAGTCAACAGTCAAATTTTACTTCAACTAGTGGCAAAACTGCA
ACTTGTAATTGCGTCCCATATTATAAATGTGATCCATCAACAAAGAGTTT
CACTGAAGATGGCTCTTTTGACGGATTTGGTGTTATAGATATTCGATTTA
ACGACGATGATCCGATATGCCCGGCATCTGTAGACGTATGTTGTGATGCT
AATAGGACGCTTAATAAGACGTTGAATCCGACACCCTTGGATCAAAGGCC
AAACCAGCCAAGAGGCTGTGGTGTTCGCAATACAGGTGGATTGGATTTTA
CTCTTTCCGGAGTATCGCAAAATGAAGCGGGTTTTGGCGAGTTTCCATGG
ACGGTAGCATTATTGCATTCTGGAAATTTAAGCTATTTCTGTGCTGGATC
TCTTATACATAAACAGGTGGTTTTGACCGCTGCGCACTGTGTTGAGTCGC
TTAGAACAGGATCGTTTACTGTCCGAGCTGGAGAGTGGGATACACAAACA
ATGAAAGAGCGTCTACCCTATCAAGAAAGATCGGTTCAAACTGTTATATT
GCACCCAGATTATAACAGAAGAAGCATAGCTTATGATTTCGCACTTGTAA
TTCTAAGTCAGCCGGTTACTTTGGATGATCACATTAATGTTATATGTT
BO04561.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed on 2007-05-06 12:07:48 has no hits.
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:45:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG40160-RH | 4869 | CG40160-RH | 85..916 | 17..848 | 4160 | 100 | Plus |
CG40160-RG | 1478 | CG40160-RG | 121..952 | 17..848 | 4160 | 100 | Plus |
CG40160-RF | 1422 | CG40160-RF | 65..896 | 17..848 | 4160 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:45:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 26224649..26225480 | 17..848 | 4160 | 100 | Plus |
2R | 25286936 | 2R | 3469369..3470199 | 848..20 | 3500 | 95.6 | Minus |
2R | 25286936 | 2R | 3334862..3335566 | 20..721 | 2945 | 95.2 | Plus |
2R | 25286936 | 2R | 3335571..3335666 | 753..848 | 465 | 99 | Plus |
Blast to na_te.dros performed on 2015-02-11 04:45:56 has no hits.
BO04561.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:13:10 Download gff for
BO04561.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG40160-RF | 58..896 | 9..848 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:27:20 Download gff for
BO04561.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG40160-RF | 58..896 | 9..848 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 09:27:20 Download gff for
BO04561.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 26224649..26225480 | 17..848 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:13:10 Download gff for
BO04561.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3LHet | 1571199..1572030 | 17..848 | 100 | | Plus |
BO04561.complete Sequence
1297 bp (1297 high quality bases) assembled on 2005-09-08
GenBank Submission: FJ629799
> BO04561.complete
GAAGTTATCAGTCGACATGAATGGCTATACAAATAATTGTATATCGATAT
GTGCAATTTTATTAATAGGCGTATCTTCACCCGCTCCTCAGCAGAACATT
AACGCACAGAAAAACATTGAGGAAATATTTAATACTAATAGTAATCTTTC
AGCGCAAAAAGAATCCGGAATCGGATTAGTGATTACCCCCGATCCTATGG
AAACTATAAGTCAACAGTCAAATTTTACTTCAACTAGTGGCAAAACTGCA
ACTTGTAATTGCGTCCCATATTATAAATGTGATCCATCAACAAAGAGTTT
CACTGAAGATGGCTCTTTTGACGGATTTGGTGTTATAGATATTCGATTTA
ACGACGATGATCCGATATGCCCGGCATCTGTAGACGTATGTTGTGATGCT
AATAGGACGCTTAATAAGACGTTGAATCCGACACCCTTGGATCAAAGGCC
AAACCAGCCAAGAGGCTGTGGTGTTCGCAATACAGGTGGATTGGATTTTA
CTCTTTCCGGAGTATCGCAAAATGAAGCGGGTTTTGGCGAGTTTCCATGG
ACGGTAGCATTATTGCATTCTGGAAATTTAAGCTATTTCTGTGCTGGATC
TCTTATACATAAACAGGTGGTTTTGACCGCTGCGCACTGTGTTGAGTCGC
TTAGAACAGGATCGTTTACTGTCCGAGCTGGAGAGTGGGATACACAAACA
ATGAAAGAGCGTCTACCCTATCAAGAAAGATCGGTTCAAACTGTTATATT
GCACCCAGATTATAACAGAAGAAGCATAGCTTATGATTTCGCACTTGTAA
TTCTAAGTCAGCCGGTTACTTTGGATGATCACATTAATGTTATATGTTTA
CCTCAACAAGATGATATTCCGCAGCCCGGTAACACATGTTTTTCCACCGG
CTGGGGAAAAGATGCTTTTGGTTCTTTGGGCAAATATAGCTCCTTAATGA
AACGTGTTCCATTGCCCATTGTTGAGTTTAACAGTTGTCAGACACGACTT
AGAGGCACTCGACTTGGACCAAAGTTTGCATTGGATAGGTCATTCATATG
CGCGGGTGGACAGCGTGGCATTGATACCTGTCAAGGGGATGGCGGGGCTC
CACTAGCTTGTCCTAGGGGAAGTACACGTGAATCCCGATATCAACAGACT
GGTATAGTTGCTTGGGGAATCGGATGTAATGATGAAGTTCCAGCAGCTTA
TGCCAACGTAGCCTTGGTCAGAGGTTGGATTGACCAGCAAATGTTAACCA
ATGGCTTCGGAACGGCTGTGTACACCGCAGCAAGCTTTCTAGACCAT
BO04561.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 19:39:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG40160-RH | 1266 | CG40160-PH | 1..1263 | 17..1279 | 6315 | 100 | Plus |
CG40160-RG | 1266 | CG40160-PG | 1..1263 | 17..1279 | 6315 | 100 | Plus |
CG40160-RF | 1266 | CG40160-PF | 1..1263 | 17..1279 | 6315 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 19:39:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG40160-RH | 4869 | CG40160-RH | 85..1347 | 17..1279 | 6315 | 100 | Plus |
CG40160-RG | 1478 | CG40160-RG | 121..1383 | 17..1279 | 6315 | 100 | Plus |
CG40160-RF | 1422 | CG40160-RF | 65..1327 | 17..1279 | 6315 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 19:39:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 26224649..26225911 | 17..1279 | 6315 | 100 | Plus |
2R | 25286936 | 2R | 3468955..3470199 | 1279..20 | 5020 | 93.9 | Minus |
2R | 25286936 | 2R | 3334862..3335566 | 20..721 | 2945 | 95.2 | Plus |
2R | 25286936 | 2R | 3335571..3336083 | 753..1279 | 1995 | 92.8 | Plus |
3L | 28110227 | 3L | 26223678..26223790 | 855..966 | 335 | 88.5 | Plus |
Blast to na_te.dros performed on 2014-11-27 19:39:04 has no hits.
BO04561.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:40:21 Download gff for
BO04561.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG40160-RB | 85..1350 | 17..1282 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:09:30 Download gff for
BO04561.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG40160-RB | 86..1354 | 17..1287 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:57:44 Download gff for
BO04561.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG40160-RF | 65..1327 | 17..1281 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:40:21 Download gff for
BO04561.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG40160-RB | 86..1354 | 17..1287 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:05:37 Download gff for
BO04561.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG40160-RF | 65..1327 | 17..1281 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:05:37 Download gff for
BO04561.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 26224649..26225911 | 17..1281 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:57:44 Download gff for
BO04561.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3LHet | 1571199..1572461 | 17..1281 | 99 | | Plus |
BO04561.pep Sequence
Translation from 16 to 1297
> BO04561.pep
MNGYTNNCISICAILLIGVSSPAPQQNINAQKNIEEIFNTNSNLSAQKES
GIGLVITPDPMETISQQSNFTSTSGKTATCNCVPYYKCDPSTKSFTEDGS
FDGFGVIDIRFNDDDPICPASVDVCCDANRTLNKTLNPTPLDQRPNQPRG
CGVRNTGGLDFTLSGVSQNEAGFGEFPWTVALLHSGNLSYFCAGSLIHKQ
VVLTAAHCVESLRTGSFTVRAGEWDTQTMKERLPYQERSVQTVILHPDYN
RRSIAYDFALVILSQPVTLDDHINVICLPQQDDIPQPGNTCFSTGWGKDA
FGSLGKYSSLMKRVPLPIVEFNSCQTRLRGTRLGPKFALDRSFICAGGQR
GIDTCQGDGGAPLACPRGSTRESRYQQTGIVAWGIGCNDEVPAAYANVAL
VRGWIDQQMLTNGFGTAVYTAASFLDH
BO04561.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:33:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG40160-PH | 421 | CG40160-PH | 1..421 | 1..421 | 2262 | 100 | Plus |
CG40160-PG | 421 | CG40160-PG | 1..421 | 1..421 | 2262 | 100 | Plus |
CG40160-PF | 421 | CG40160-PF | 1..421 | 1..421 | 2262 | 100 | Plus |
CG40160-PE | 421 | CG40160-PE | 1..421 | 1..421 | 2262 | 100 | Plus |
CG40160-PD | 421 | CG40160-PD | 1..421 | 1..421 | 2262 | 100 | Plus |