Clone BO04564 Report

Search the DGRC for BO04564

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:45
Well:64
Vector:pDNR-Dual
Associated Gene/TranscriptCG10802-RA
Protein status:BO04564.pep: validated full length
Sequenced Size:1342

Clone Sequence Records

BO04564.3prime Sequence

961 bp (828 high quality bases) assembled on 2005-12-01

> BO04564.3prime
ATGGTCTAGAAAGCTTGCTTCCTCTGCCTCCAGTTGAGCTCCATTTGCAG
GAGCGGCTTCGATGATCCTCTTTGGTTTAAACTCCGCCTCCAGCAGCTCT
TGGCATTCCTGCAGTCTAGCCAAGTTGTTGATTTTTCCCTGGAAATTGTC
CTCTTTGCCGTTTCCCTTGCCCTCGAGAATTTCCATAAATTGGGGACCGA
GTTTCCCGACAATTTCTGGATCTCCGCGCAGCACCAGATGTCCTTTGGCA
CTGCTGCCAGCAAAAACGCTCTCGGAAACAGTGAGAAAGTAGAAGATTCC
TTCCGGAGCCGCCCGCAAGAATGTGTTGATGAAGTCCACCTCGATGCCAT
CGCGTCGATGGAGAGAGAAATATTTCGGACGATCCTTTTTGGGCAAATCG
CAGAGACGCTCGGCTTCGGCGGTGGCGTAACGTTTAAGCAGCTGCTGGAA
GTACTTTCGACTGCCCTTCACATTTTGCTGTAGCTTCTGGACAAGCTCCA
AGTGCTGACCGGGTCCACCTTTTAAAGCCTGTGTTAGCTGCTGTTCGCGC
TGAAAGACCTCGCCAAGCTTTACGAGCACCCTCTCGCCGACGACAAAGTG
CACCAGAACATTCGCCTTCACCTTCTCGGCGTAGAGCAGCTTAATGCACT
GCAGTTGAGAGAGATTCGTGACGTGGGTGCCGCAGCACATGTTGCTCTCA
ATGCCCTCGATTCGCACCACCCTGGCCAGACCCTCGTGATCCTTGGGCAA
TCCCCTGGGAGCTCTGGCATCCTGGAACTCTTGCGCCACCTCGGGATCCA
CCAGAAGCACCGTAACTTCACGGCCCTCGCGAATCAGATCGTTGGCCTGA
CGTTCGATGAGGTCCAATGACTCGCGACTTATCAAATGAGGCGTACTTAA
TTGAATGTAAGAGACAGTGGATTCCAGGGACCACGAGGTGGTATCGTACT
TGAACTCCCTG

BO04564.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:07:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG10802-PA 1311 CG10802-RA 366..1308 961..19 4690 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:13:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG10802-RA 1472 CG10802-RA 446..1388 961..19 4700 99.9 Minus
CG10802-RB 1400 CG10802-RB 458..1316 877..19 4295 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:13:50
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 3483970..3484471 520..19 2510 100 Minus
X 23542271 X 3483472..3483912 961..521 2190 99.8 Minus
Blast to na_te.dros performed on 2015-02-13 00:13:53 has no hits.

BO04564.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:06:03 Download gff for BO04564.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10802-PA 366..1311 16..961 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:20:28 Download gff for BO04564.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10802-PA 366..1311 16..961 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 20:31:09 Download gff for BO04564.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10802-RA 446..1393 14..961 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:41:35 Download gff for BO04564.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10802-RA 446..1393 14..961 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:41:35 Download gff for BO04564.3prime
Subject Subject Range Query Range Percent Splice Strand
X 3483472..3483912 521..961 99 -> Minus
X 3483970..3484476 14..520 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 20:31:09 Download gff for BO04564.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 3377505..3377945 521..961 99 -> Minus
arm_X 3378003..3378509 14..520 99   Minus

BO04564.5prime Sequence

877 bp (759 high quality bases) assembled on 2005-11-29

> BO04564.5prime
GAAGTTATCAGTCGACATGGTGTTCAAGTGCCAGGAGGACAGTTTCCTGA
AGGAGTTCAAGACAAAAATCGTTAGCAGCGAGTTTGCCACCTTGGATTGG
ACAGATCCCAGTGGAAAGGTGGAGAAACTCAAGGGCTTCAATGTGATCTG
CGAGGACACGATACTATTTCCCGAGGGCGGTGGTCAGCCCTGCGATTACG
GAACCTTAGGCGGATTTCCAGTTAAGAATGTCCAGAGAAAAGGCTCTACG
GCTGTACATTTTGTGGAATCCCCAACGAGTTTCGAGCAGGATGCCGAAGT
CCTTCTGACACTAGACTACCAAAGAAGACTGGATCACATGCAACAGCACT
CAGGACAGCACCTGATCACCGCCCTGTTCGACAGGGAGTTCAAGTACGAT
ACCACCTCGTGGTCCCTGGGATCCACTGTCTCTTACATTCAATTAAGTAC
GCCTCATTTGATAAGTCGCGAGTCATTGGACCTCATCGAACGTCAGGCCA
ACGATCTGATTCGCGAGGGCCGTGAAGTTACGGTGCTTCTGGTGGATCCC
GAGGTGGCGCAAGAGTTCCAGGATGCCAGAGCTCCCAGGGGATTGCCCAA
GGATCACGAGGGTCTGGCCAGGGTGGTGCGAATCGAGGGCATTGAGAGCA
ACATGTGCTGCGGCACCCACGTCACGAATCTCTCTCAACTGCAGTGCATT
AAGCTGCTCTACGCCGAGAAGGTGAAGGCGAATGTTCTGGTGCACTTTGT
CGTCGGCGAGAGGGTGCTCGTAAAGCTTGGCGAGGTCTTTCAGCGCGAAC
AGCAGCTAACACAGGCTTTAAAAGGTGGACCCGGTCAGCACTTGGAGCTT
GTCCAGAAGCTACAGCAAAATGTGAAA

BO04564.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:07:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG10802-PA 1311 CG10802-RA 1..860 17..876 4300 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:36:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG10802-RA 1472 CG10802-RA 81..940 17..876 4300 100 Plus
CG10802-RB 1400 CG10802-RB 458..868 466..876 2055 100 Plus
CG10802-RB 1400 CG10802-RB 81..457 17..393 1885 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:36:06
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 3483144..3483912 54..822 3845 100 Plus
X 23542271 X 3483970..3484023 823..876 270 100 Plus
X 23542271 X 3483045..3483083 17..55 195 100 Plus
Blast to na_te.dros performed on 2015-02-11 15:36:07 has no hits.

BO04564.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:06:04 Download gff for BO04564.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10802-PA 1..858 17..874 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:20:30 Download gff for BO04564.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10802-PA 1..858 17..874 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:33:53 Download gff for BO04564.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10802-RA 81..938 17..874 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:29:50 Download gff for BO04564.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10802-RA 81..938 17..874 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:29:50 Download gff for BO04564.5prime
Subject Subject Range Query Range Percent Splice Strand
X 3483045..3483083 17..55 100 -> Plus
X 3483146..3483912 56..822 100 -> Plus
X 3483970..3484021 823..874 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:33:53 Download gff for BO04564.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 3377078..3377116 17..55 100 -> Plus
arm_X 3377179..3377945 56..822 100 -> Plus
arm_X 3378003..3378054 823..874 100   Plus

BO04564.complete Sequence

1342 bp (1342 high quality bases) assembled on 2005-09-08

GenBank Submission: FJ629800

> BO04564.complete
GAAGTTATCAGTCGACATGGTGTTCAAGTGCCAGGAGGACAGTTTCCTGA
AGGAGTTCAAGACAAAAATCGTTAGCAGCGAGTTTGCCACCTTGGATTGG
ACAGATCCCAGTGGAAAGGTGGAGAAACTCAAGGGCTTCAATGTGATCTG
CGAGGACACGATACTATTTCCCGAGGGCGGTGGTCAGCCCTGCGATTACG
GAACCTTAGGCGGATTTCCAGTTAAGAATGTCCAGAGAAAAGGCTCTACG
GCTGTACATTTTGTGGAATCCCCAACGAGTTTCGAGCAGGATGCCGAAGT
CCTTCTGACACTAGACTACCAAAGAAGACTGGATCACATGCAACAGCACT
CAGGACAGCACCTGATCACCGCCCTGTTCGACAGGGAGTTCAAGTACGAT
ACCACCTCGTGGTCCCTGGGATCCACTGTCTCTTACATTCAATTAAGTAC
GCCTCATTTGATAAGTCGCGAGTCATTGGACCTCATCGAACGTCAGGCCA
ACGATCTGATTCGCGAGGGCCGTGAAGTTACGGTGCTTCTGGTGGATCCC
GAGGTGGCGCAAGAGTTCCAGGATGCCAGAGCTCCCAGGGGATTGCCCAA
GGATCACGAGGGTCTGGCCAGGGTGGTGCGAATCGAGGGCATTGAGAGCA
ACATGTGCTGCGGCACCCACGTCACGAATCTCTCTCAACTGCAGTGCATT
AAGCTGCTCTACGCCGAGAAGGTGAAGGCGAATGTTCTGGTGCACTTTGT
CGTCGGCGAGAGGGTGCTCGTAAAGCTTGGCGAGGTCTTTCAGCGCGAAC
AGCAGCTAACACAGGCTTTAAAAGGTGGACCCGGTCAGCACTTGGAGCTT
GTCCAGAAGCTACAGCAAAATGTGAAGGGCAGTCGAAAGTACTTCCAGCA
GCTGCTTAAACGTTACGCCACCGCCGAAGCCGAGCGTCTCTGCGATTTGC
CCAAAAAGGATCGTCCGAAATATTTCTCTCTCCATCGACGCGATGGCATC
GAGGTGGACTTCATCAACACATTCTTGCGGGCGGCTCCGGAAGGAATCTT
CTACTTTCTCACTGTTTCCGAGAGCGTTTTTGCTGGCAGCAGTGCCAAAG
GACATCTGGTGCTGCGCGGAGATCCAGAAATTGTCGGGAAACTCGGTCCC
CAATTTATGGAAATTCTCGAGGGCAAGGGAAACGGCAAAGAGGACAATTT
CCAGGGAAAAATCAACAACTTGGCTAGACTGCAGGAATGCCAAGAGCTGC
TGGAGGCGGAGTTTAAACCAAAGAGGATCATCGAAGCCGCTCCTGCAAAT
GGAGCTCAACTGGAGGCAGAGGAAGCAAGCTTTCTAGACCAT

BO04564.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:44:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG10802-RA 1311 CG10802-PA 1..1308 17..1324 6540 100 Plus
CG10802-RB 1239 CG10802-PB 378..1236 466..1324 4295 100 Plus
CG10802-RB 1239 CG10802-PB 1..377 17..393 1885 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:44:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG10802-RA 1472 CG10802-RA 81..1388 17..1324 6540 100 Plus
CG10802-RB 1400 CG10802-RB 458..1316 466..1324 4295 100 Plus
CG10802-RB 1400 CG10802-RB 81..457 17..393 1885 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:44:10
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 3483144..3483912 54..822 3845 100 Plus
X 23542271 X 3483970..3484471 823..1324 2510 100 Plus
X 23542271 X 3483045..3483083 17..55 195 100 Plus
Blast to na_te.dros performed on 2014-11-27 15:44:11 has no hits.

BO04564.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:40:23 Download gff for BO04564.complete
Subject Subject Range Query Range Percent Splice Strand
CG10802-RA 1..1311 17..1327 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:09:33 Download gff for BO04564.complete
Subject Subject Range Query Range Percent Splice Strand
CG10802-RA 77..1389 17..1329 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:45:30 Download gff for BO04564.complete
Subject Subject Range Query Range Percent Splice Strand
CG10802-RA 81..1388 17..1326 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:40:23 Download gff for BO04564.complete
Subject Subject Range Query Range Percent Splice Strand
CG10802-RA 77..1389 17..1329 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:15:16 Download gff for BO04564.complete
Subject Subject Range Query Range Percent Splice Strand
CG10802-RA 81..1388 17..1326 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:15:16 Download gff for BO04564.complete
Subject Subject Range Query Range Percent Splice Strand
X 3483045..3483083 17..55 100 -> Plus
X 3483146..3483912 56..822 100 -> Plus
X 3483970..3484471 823..1326 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:45:30 Download gff for BO04564.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 3377078..3377116 17..55 100 -> Plus
arm_X 3377179..3377945 56..822 100 -> Plus
arm_X 3378003..3378504 823..1326 99   Plus

BO04564.pep Sequence

Translation from 16 to 1342

> BO04564.pep
MVFKCQEDSFLKEFKTKIVSSEFATLDWTDPSGKVEKLKGFNVICEDTIL
FPEGGGQPCDYGTLGGFPVKNVQRKGSTAVHFVESPTSFEQDAEVLLTLD
YQRRLDHMQQHSGQHLITALFDREFKYDTTSWSLGSTVSYIQLSTPHLIS
RESLDLIERQANDLIREGREVTVLLVDPEVAQEFQDARAPRGLPKDHEGL
ARVVRIEGIESNMCCGTHVTNLSQLQCIKLLYAEKVKANVLVHFVVGERV
LVKLGEVFQREQQLTQALKGGPGQHLELVQKLQQNVKGSRKYFQQLLKRY
ATAEAERLCDLPKKDRPKYFSLHRRDGIEVDFINTFLRAAPEGIFYFLTV
SESVFAGSSAKGHLVLRGDPEIVGKLGPQFMEILEGKGNGKEDNFQGKIN
NLARLQECQELLEAEFKPKRIIEAAPANGAQLEAEEASFLDH

BO04564.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:34:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG10802-PA 436 CG10802-PA 1..436 1..436 2252 100 Plus
CG10802-PB 412 CG10802-PB 1..412 1..436 2088 94.3 Plus