Clone Sequence Records
BO04564.3prime Sequence
961 bp (828 high quality bases) assembled on 2005-12-01
> BO04564.3prime
ATGGTCTAGAAAGCTTGCTTCCTCTGCCTCCAGTTGAGCTCCATTTGCAG
GAGCGGCTTCGATGATCCTCTTTGGTTTAAACTCCGCCTCCAGCAGCTCT
TGGCATTCCTGCAGTCTAGCCAAGTTGTTGATTTTTCCCTGGAAATTGTC
CTCTTTGCCGTTTCCCTTGCCCTCGAGAATTTCCATAAATTGGGGACCGA
GTTTCCCGACAATTTCTGGATCTCCGCGCAGCACCAGATGTCCTTTGGCA
CTGCTGCCAGCAAAAACGCTCTCGGAAACAGTGAGAAAGTAGAAGATTCC
TTCCGGAGCCGCCCGCAAGAATGTGTTGATGAAGTCCACCTCGATGCCAT
CGCGTCGATGGAGAGAGAAATATTTCGGACGATCCTTTTTGGGCAAATCG
CAGAGACGCTCGGCTTCGGCGGTGGCGTAACGTTTAAGCAGCTGCTGGAA
GTACTTTCGACTGCCCTTCACATTTTGCTGTAGCTTCTGGACAAGCTCCA
AGTGCTGACCGGGTCCACCTTTTAAAGCCTGTGTTAGCTGCTGTTCGCGC
TGAAAGACCTCGCCAAGCTTTACGAGCACCCTCTCGCCGACGACAAAGTG
CACCAGAACATTCGCCTTCACCTTCTCGGCGTAGAGCAGCTTAATGCACT
GCAGTTGAGAGAGATTCGTGACGTGGGTGCCGCAGCACATGTTGCTCTCA
ATGCCCTCGATTCGCACCACCCTGGCCAGACCCTCGTGATCCTTGGGCAA
TCCCCTGGGAGCTCTGGCATCCTGGAACTCTTGCGCCACCTCGGGATCCA
CCAGAAGCACCGTAACTTCACGGCCCTCGCGAATCAGATCGTTGGCCTGA
CGTTCGATGAGGTCCAATGACTCGCGACTTATCAAATGAGGCGTACTTAA
TTGAATGTAAGAGACAGTGGATTCCAGGGACCACGAGGTGGTATCGTACT
TGAACTCCCTG
BO04564.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:07:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10802-PA | 1311 | CG10802-RA | 366..1308 | 961..19 | 4690 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:13:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10802-RA | 1472 | CG10802-RA | 446..1388 | 961..19 | 4700 | 99.9 | Minus |
CG10802-RB | 1400 | CG10802-RB | 458..1316 | 877..19 | 4295 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:13:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 3483970..3484471 | 520..19 | 2510 | 100 | Minus |
X | 23542271 | X | 3483472..3483912 | 961..521 | 2190 | 99.8 | Minus |
Blast to na_te.dros performed on 2015-02-13 00:13:53 has no hits.
BO04564.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:06:03 Download gff for
BO04564.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10802-PA | 366..1311 | 16..961 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:20:28 Download gff for
BO04564.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10802-PA | 366..1311 | 16..961 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 20:31:09 Download gff for
BO04564.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10802-RA | 446..1393 | 14..961 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:41:35 Download gff for
BO04564.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10802-RA | 446..1393 | 14..961 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:41:35 Download gff for
BO04564.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 3483472..3483912 | 521..961 | 99 | -> | Minus |
X | 3483970..3484476 | 14..520 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 20:31:09 Download gff for
BO04564.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 3377505..3377945 | 521..961 | 99 | -> | Minus |
arm_X | 3378003..3378509 | 14..520 | 99 | | Minus |
BO04564.5prime Sequence
877 bp (759 high quality bases) assembled on 2005-11-29
> BO04564.5prime
GAAGTTATCAGTCGACATGGTGTTCAAGTGCCAGGAGGACAGTTTCCTGA
AGGAGTTCAAGACAAAAATCGTTAGCAGCGAGTTTGCCACCTTGGATTGG
ACAGATCCCAGTGGAAAGGTGGAGAAACTCAAGGGCTTCAATGTGATCTG
CGAGGACACGATACTATTTCCCGAGGGCGGTGGTCAGCCCTGCGATTACG
GAACCTTAGGCGGATTTCCAGTTAAGAATGTCCAGAGAAAAGGCTCTACG
GCTGTACATTTTGTGGAATCCCCAACGAGTTTCGAGCAGGATGCCGAAGT
CCTTCTGACACTAGACTACCAAAGAAGACTGGATCACATGCAACAGCACT
CAGGACAGCACCTGATCACCGCCCTGTTCGACAGGGAGTTCAAGTACGAT
ACCACCTCGTGGTCCCTGGGATCCACTGTCTCTTACATTCAATTAAGTAC
GCCTCATTTGATAAGTCGCGAGTCATTGGACCTCATCGAACGTCAGGCCA
ACGATCTGATTCGCGAGGGCCGTGAAGTTACGGTGCTTCTGGTGGATCCC
GAGGTGGCGCAAGAGTTCCAGGATGCCAGAGCTCCCAGGGGATTGCCCAA
GGATCACGAGGGTCTGGCCAGGGTGGTGCGAATCGAGGGCATTGAGAGCA
ACATGTGCTGCGGCACCCACGTCACGAATCTCTCTCAACTGCAGTGCATT
AAGCTGCTCTACGCCGAGAAGGTGAAGGCGAATGTTCTGGTGCACTTTGT
CGTCGGCGAGAGGGTGCTCGTAAAGCTTGGCGAGGTCTTTCAGCGCGAAC
AGCAGCTAACACAGGCTTTAAAAGGTGGACCCGGTCAGCACTTGGAGCTT
GTCCAGAAGCTACAGCAAAATGTGAAA
BO04564.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:07:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10802-PA | 1311 | CG10802-RA | 1..860 | 17..876 | 4300 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:36:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10802-RA | 1472 | CG10802-RA | 81..940 | 17..876 | 4300 | 100 | Plus |
CG10802-RB | 1400 | CG10802-RB | 458..868 | 466..876 | 2055 | 100 | Plus |
CG10802-RB | 1400 | CG10802-RB | 81..457 | 17..393 | 1885 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:36:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 3483144..3483912 | 54..822 | 3845 | 100 | Plus |
X | 23542271 | X | 3483970..3484023 | 823..876 | 270 | 100 | Plus |
X | 23542271 | X | 3483045..3483083 | 17..55 | 195 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 15:36:07 has no hits.
BO04564.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:06:04 Download gff for
BO04564.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10802-PA | 1..858 | 17..874 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:20:30 Download gff for
BO04564.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10802-PA | 1..858 | 17..874 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:33:53 Download gff for
BO04564.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10802-RA | 81..938 | 17..874 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:29:50 Download gff for
BO04564.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10802-RA | 81..938 | 17..874 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:29:50 Download gff for
BO04564.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 3483045..3483083 | 17..55 | 100 | -> | Plus |
X | 3483146..3483912 | 56..822 | 100 | -> | Plus |
X | 3483970..3484021 | 823..874 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:33:53 Download gff for
BO04564.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 3377078..3377116 | 17..55 | 100 | -> | Plus |
arm_X | 3377179..3377945 | 56..822 | 100 | -> | Plus |
arm_X | 3378003..3378054 | 823..874 | 100 | | Plus |
BO04564.complete Sequence
1342 bp (1342 high quality bases) assembled on 2005-09-08
GenBank Submission: FJ629800
> BO04564.complete
GAAGTTATCAGTCGACATGGTGTTCAAGTGCCAGGAGGACAGTTTCCTGA
AGGAGTTCAAGACAAAAATCGTTAGCAGCGAGTTTGCCACCTTGGATTGG
ACAGATCCCAGTGGAAAGGTGGAGAAACTCAAGGGCTTCAATGTGATCTG
CGAGGACACGATACTATTTCCCGAGGGCGGTGGTCAGCCCTGCGATTACG
GAACCTTAGGCGGATTTCCAGTTAAGAATGTCCAGAGAAAAGGCTCTACG
GCTGTACATTTTGTGGAATCCCCAACGAGTTTCGAGCAGGATGCCGAAGT
CCTTCTGACACTAGACTACCAAAGAAGACTGGATCACATGCAACAGCACT
CAGGACAGCACCTGATCACCGCCCTGTTCGACAGGGAGTTCAAGTACGAT
ACCACCTCGTGGTCCCTGGGATCCACTGTCTCTTACATTCAATTAAGTAC
GCCTCATTTGATAAGTCGCGAGTCATTGGACCTCATCGAACGTCAGGCCA
ACGATCTGATTCGCGAGGGCCGTGAAGTTACGGTGCTTCTGGTGGATCCC
GAGGTGGCGCAAGAGTTCCAGGATGCCAGAGCTCCCAGGGGATTGCCCAA
GGATCACGAGGGTCTGGCCAGGGTGGTGCGAATCGAGGGCATTGAGAGCA
ACATGTGCTGCGGCACCCACGTCACGAATCTCTCTCAACTGCAGTGCATT
AAGCTGCTCTACGCCGAGAAGGTGAAGGCGAATGTTCTGGTGCACTTTGT
CGTCGGCGAGAGGGTGCTCGTAAAGCTTGGCGAGGTCTTTCAGCGCGAAC
AGCAGCTAACACAGGCTTTAAAAGGTGGACCCGGTCAGCACTTGGAGCTT
GTCCAGAAGCTACAGCAAAATGTGAAGGGCAGTCGAAAGTACTTCCAGCA
GCTGCTTAAACGTTACGCCACCGCCGAAGCCGAGCGTCTCTGCGATTTGC
CCAAAAAGGATCGTCCGAAATATTTCTCTCTCCATCGACGCGATGGCATC
GAGGTGGACTTCATCAACACATTCTTGCGGGCGGCTCCGGAAGGAATCTT
CTACTTTCTCACTGTTTCCGAGAGCGTTTTTGCTGGCAGCAGTGCCAAAG
GACATCTGGTGCTGCGCGGAGATCCAGAAATTGTCGGGAAACTCGGTCCC
CAATTTATGGAAATTCTCGAGGGCAAGGGAAACGGCAAAGAGGACAATTT
CCAGGGAAAAATCAACAACTTGGCTAGACTGCAGGAATGCCAAGAGCTGC
TGGAGGCGGAGTTTAAACCAAAGAGGATCATCGAAGCCGCTCCTGCAAAT
GGAGCTCAACTGGAGGCAGAGGAAGCAAGCTTTCTAGACCAT
BO04564.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:44:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10802-RA | 1311 | CG10802-PA | 1..1308 | 17..1324 | 6540 | 100 | Plus |
CG10802-RB | 1239 | CG10802-PB | 378..1236 | 466..1324 | 4295 | 100 | Plus |
CG10802-RB | 1239 | CG10802-PB | 1..377 | 17..393 | 1885 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:44:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10802-RA | 1472 | CG10802-RA | 81..1388 | 17..1324 | 6540 | 100 | Plus |
CG10802-RB | 1400 | CG10802-RB | 458..1316 | 466..1324 | 4295 | 100 | Plus |
CG10802-RB | 1400 | CG10802-RB | 81..457 | 17..393 | 1885 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:44:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 3483144..3483912 | 54..822 | 3845 | 100 | Plus |
X | 23542271 | X | 3483970..3484471 | 823..1324 | 2510 | 100 | Plus |
X | 23542271 | X | 3483045..3483083 | 17..55 | 195 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 15:44:11 has no hits.
BO04564.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:40:23 Download gff for
BO04564.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10802-RA | 1..1311 | 17..1327 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:09:33 Download gff for
BO04564.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10802-RA | 77..1389 | 17..1329 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:45:30 Download gff for
BO04564.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10802-RA | 81..1388 | 17..1326 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:40:23 Download gff for
BO04564.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10802-RA | 77..1389 | 17..1329 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:15:16 Download gff for
BO04564.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10802-RA | 81..1388 | 17..1326 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:15:16 Download gff for
BO04564.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 3483045..3483083 | 17..55 | 100 | -> | Plus |
X | 3483146..3483912 | 56..822 | 100 | -> | Plus |
X | 3483970..3484471 | 823..1326 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:45:30 Download gff for
BO04564.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 3377078..3377116 | 17..55 | 100 | -> | Plus |
arm_X | 3377179..3377945 | 56..822 | 100 | -> | Plus |
arm_X | 3378003..3378504 | 823..1326 | 99 | | Plus |
BO04564.pep Sequence
Translation from 16 to 1342
> BO04564.pep
MVFKCQEDSFLKEFKTKIVSSEFATLDWTDPSGKVEKLKGFNVICEDTIL
FPEGGGQPCDYGTLGGFPVKNVQRKGSTAVHFVESPTSFEQDAEVLLTLD
YQRRLDHMQQHSGQHLITALFDREFKYDTTSWSLGSTVSYIQLSTPHLIS
RESLDLIERQANDLIREGREVTVLLVDPEVAQEFQDARAPRGLPKDHEGL
ARVVRIEGIESNMCCGTHVTNLSQLQCIKLLYAEKVKANVLVHFVVGERV
LVKLGEVFQREQQLTQALKGGPGQHLELVQKLQQNVKGSRKYFQQLLKRY
ATAEAERLCDLPKKDRPKYFSLHRRDGIEVDFINTFLRAAPEGIFYFLTV
SESVFAGSSAKGHLVLRGDPEIVGKLGPQFMEILEGKGNGKEDNFQGKIN
NLARLQECQELLEAEFKPKRIIEAAPANGAQLEAEEASFLDH
BO04564.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:34:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10802-PA | 436 | CG10802-PA | 1..436 | 1..436 | 2252 | 100 | Plus |
CG10802-PB | 412 | CG10802-PB | 1..412 | 1..436 | 2088 | 94.3 | Plus |