Clone Sequence Records
BO04566.3prime Sequence
870 bp (839 high quality bases) assembled on 2005-12-01
> BO04566.3prime
ATGGTCTAGAAAGCTTGCAAAGTTAAATGAGTTCATCGTTAGCCTATCGG
CGTGTGGATCGAAATTGTATTGTGCGCCGTCGGAGGTCGGTGCCATGTTA
GTCTGTTCGCCCTCATCAGTGAAGTATTGATCGATGATCTCATAAGCTAG
TTTGTAGATTTCAACGTTTTCGTGGCTCTGCAGACGCTCGATCTTGGCCA
GGCCCTCGCATTCCTCAATGCAGTTGGCCACCGCCTCAACATGAGAATCG
GCCACTTTTAACATATTGTTCAGACCATCCAAAACAACATTTATAACTTG
CGTATCCTGGCATGAAAGGAGGTCACAGAATGGCGGAATGACGCCCTCCT
TGATCAAGGTGAAGACCTGTTCGCGGTTGCCGCTAATGGTCAGATTGCTG
ATGGCCCAGGCAGCCTCCTTCTGTGTCTGGAACTCGCCCTTGCTTAGGTT
CTCGATAATTTTGGGCAGGAGACCCACGTTAATAACGGCCTGCACCTGCG
ATTGATTTCCAGCGGTTATATTGGAAAGGAACCAAACCGCCTCCTTTCGG
ATCTTCTCCTTGGGATGCGAGAGCAGGCCCGGGAAGTAGGAGAGCGCGTC
GTAGTTGAGCACAACCTGTGTCTGCTCATCCGATCCAGTCACAATATTGC
CAACAGCCCGCAGTGCGGCTGTCTGTACCTTGACCTCGCTGTTGCCCAGC
AGTGGTATCAGCTTGGGTACAACTCCACTTTCAATGACCATCTGGATCTG
ATCGTTGCCACCGTCAGTCAAATAGCTGATGGCCCAGACCGTGTCCACCA
GGATGTTCGTGTCGGTGTGATGAATGAGCACATTGAGTGCGGGCAGGATC
TCATGAATGGTGGCTGTCGG
BO04566.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:07:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9423-PA | 1545 | Kap-alpha3-RA | 691..1542 | 870..19 | 4260 | 100 | Minus |
| CG9423-PB | 1545 | Kap-alpha3-RB | 691..1542 | 870..19 | 4260 | 100 | Minus |
| CG9423-PC | 1545 | Kap-alpha3-RC | 691..1542 | 870..19 | 4260 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 16:07:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Kap-alpha3-RD | 2261 | CG9423-RD | 897..1748 | 870..19 | 4260 | 100 | Minus |
| Kap-alpha3-RC | 2663 | CG9423-RC | 819..1670 | 870..19 | 4260 | 100 | Minus |
| Kap-alpha3-RB | 2728 | CG9423-RB | 884..1735 | 870..19 | 4260 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 16:07:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 9575875..9576458 | 287..870 | 2920 | 100 | Plus |
| 3R | 32079331 | 3R | 9575635..9575817 | 111..293 | 900 | 99.5 | Plus |
| 3R | 32079331 | 3R | 9575477..9575571 | 19..113 | 475 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 16:07:29 has no hits.
BO04566.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:06:07 Download gff for
BO04566.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9423-PA | 691..1545 | 15..870 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:20:34 Download gff for
BO04566.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9423-PC | 691..1545 | 15..870 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:29:30 Download gff for
BO04566.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Kap-alpha3-RB | 884..1744 | 10..870 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:42:56 Download gff for
BO04566.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Kap-alpha3-RB | 884..1744 | 10..870 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:42:56 Download gff for
BO04566.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 9575468..9575569 | 10..111 | 96 | <- | Plus |
| 3R | 9575636..9575812 | 112..288 | 100 | <- | Plus |
| 3R | 9575877..9576458 | 289..870 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:29:30 Download gff for
BO04566.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 5401190..5401291 | 10..111 | 96 | <- | Plus |
| arm_3R | 5401358..5401534 | 112..288 | 100 | <- | Plus |
| arm_3R | 5401599..5402180 | 289..870 | 100 | | Plus |
BO04566.5prime Sequence
844 bp (758 high quality bases) assembled on 2005-12-01
> BO04566.5prime
GAAGTTATCAGTCGACATGACGTCTATGGAGCAAAATCGTTTACAAAACT
TCAAAAACAAAGGGAAAGACCAGGATGAAATGCGACGTCGGAGAAATGAA
GTCACCGTTGAGCTGAGGAAGAACAAGCGCGAAGAGACCATTCTCAAGCG
TCGCAATGTGCCCAATTTGGACTCGAACACAGATGAGGAGGAGCAGTTGT
CCTCGTCCATTGACCTGAAGAAGCTGGCAAAGGCAGCCGCAGACGCCACC
AAGCCGGAACAGCAACTGGCCGCTGTTCAGGCTGCCCGCAAGCTGCTGTC
GTCGGACAAGAATCCACCCATCAACGATCTGATCCAAAGCGACATTCTGC
CCATCCTGGTGGAGTGCCTCAAACAACACAATCACACAATGCTCCAGTTC
GAGGCCGCCTGGGCCCTGACCAACATTGCCTCTGGCACATCGGCTCAGAC
CAACGAGGTTGTTGCCGCCGGTGCCGTGCCGCTCTTCCTTCAACTTCTCA
ACTCGCCCGCTCCCAATGTTTGCGAACAAGCCGTGTGGGCCCTGGGCAAC
ATCATAGGCGATGGTCCTTTGCTCCGCGATTTTGTCATTAAGCACGGAGT
CGTGCAGCCACTTTTGTCGTTCATCAAGCCAGACATCCCCATCACATTCT
TGCGCAATGTAACATGGGTTATTGTGAATTTGTGCCGCAACAAGGATCCG
GCTCCCCCGACAGCCACCATTCATGAGATCCTGCCCGCACTCAATGTGCT
CATTCATCACACCGACACGAACATCCTGGTGGACACGGTCTGGGCCATCA
GCTATTTGACTGACGGTGGCAACGATCAGATCCAGATGGTCATT
BO04566.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:07:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9423-PA | 1545 | Kap-alpha3-RA | 1..828 | 17..844 | 4140 | 100 | Plus |
| CG9423-PB | 1545 | Kap-alpha3-RB | 1..828 | 17..844 | 4140 | 100 | Plus |
| CG9423-PC | 1545 | Kap-alpha3-RC | 1..828 | 17..844 | 4140 | 100 | Plus |
| CG4799-PA | 1569 | Pen-RA | 380..434 | 387..441 | 150 | 90.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:09:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Kap-alpha3-RD | 2261 | CG9423-RD | 197..1034 | 7..844 | 4145 | 99.6 | Plus |
| Kap-alpha3-RC | 2663 | CG9423-RC | 119..956 | 7..844 | 4145 | 99.6 | Plus |
| Kap-alpha3-RB | 2728 | CG9423-RB | 184..1021 | 7..844 | 4145 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:09:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 9576321..9576709 | 844..456 | 1945 | 100 | Minus |
| 3R | 32079331 | 3R | 9576766..9577148 | 459..77 | 1915 | 100 | Minus |
| 3R | 32079331 | 3R | 9577207..9577277 | 77..7 | 310 | 95.8 | Minus |
| 2L | 23513712 | 2L | 10058201..10058255 | 387..441 | 200 | 90.9 | Plus |
Blast to na_te.dros performed on 2015-02-12 01:09:26 has no hits.
BO04566.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:06:08 Download gff for
BO04566.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9423-PA | 1..828 | 17..844 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:20:35 Download gff for
BO04566.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9423-PC | 1..828 | 17..844 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 11:38:43 Download gff for
BO04566.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Kap-alpha3-RB | 184..1021 | 7..844 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:07:16 Download gff for
BO04566.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Kap-alpha3-RB | 184..1021 | 7..844 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 05:07:16 Download gff for
BO04566.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 9576321..9576707 | 458..844 | 100 | <- | Minus |
| 3R | 9576768..9577148 | 77..457 | 100 | <- | Minus |
| 3R | 9577208..9577277 | 7..76 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 11:38:43 Download gff for
BO04566.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 5402043..5402429 | 458..844 | 100 | <- | Minus |
| arm_3R | 5402490..5402870 | 77..457 | 100 | <- | Minus |
| arm_3R | 5402930..5402999 | 7..76 | 95 | | Minus |
BO04566.complete Sequence
1576 bp (1576 high quality bases) assembled on 2005-09-08
GenBank Submission: FJ629801
> BO04566.complete
GAAGTTATCAGTCGACATGACGTCTATGGAGCAAAATCGTTTACAAAACT
TCAAAAACAAAGGGAAAGACCAGGATGAAATGCGACGTCGGAGAAATGAA
GTCACCGTTGAGCTGAGGAAGAACAAGCGCGAAGAGACCATTCTCAAGCG
TCGCAATGTGCCCAATTTGGACTCGAACACAGATGAGGAGGAGCAGTTGT
CCTCGTCCATTGACCTGAAGAAGCTGGCAAAGGCAGCCGCAGACGCCACC
AAGCCGGAACAGCAACTGGCCGCTGTTCAGGCTGCCCGCAAGCTGCTGTC
GTCGGACAAGAATCCACCCATCAACGATCTGATCCAAAGCGACATTCTGC
CCATCCTGGTGGAGTGCCTCAAACAACACAATCACACAATGCTCCAGTTC
GAGGCCGCCTGGGCCCTGACCAACATTGCCTCTGGCACATCGGCTCAGAC
CAACGAGGTTGTTGCCGCCGGTGCCGTGCCGCTCTTCCTTCAACTTCTCA
ACTCGCCCGCTCCCAATGTTTGCGAACAAGCCGTGTGGGCCCTGGGCAAC
ATCATAGGCGATGGTCCTTTGCTCCGCGATTTTGTCATTAAGCACGGAGT
CGTGCAGCCACTTTTGTCGTTCATCAAGCCAGACATCCCCATCACATTCT
TGCGCAATGTAACATGGGTTATTGTGAATTTGTGCCGCAACAAGGATCCG
GCTCCCCCGACAGCCACCATTCATGAGATCCTGCCCGCACTCAATGTGCT
CATTCATCACACCGACACGAACATCCTGGTGGACACGGTCTGGGCCATCA
GCTATTTGACTGACGGTGGCAACGATCAGATCCAGATGGTCATTGAAAGT
GGAGTTGTACCCAAGCTGATACCACTGCTGGGCAACAGCGAGGTCAAGGT
ACAGACAGCCGCACTGCGGGCTGTTGGCAATATTGTGACTGGATCGGATG
AGCAGACACAGGTTGTGCTCAACTACGACGCGCTCTCCTACTTCCCGGGC
CTGCTCTCGCATCCCAAGGAGAAGATCCGAAAGGAGGCGGTTTGGTTCCT
TTCCAATATAACCGCTGGAAATCAATCGCAGGTGCAGGCCGTTATTAACG
TGGGTCTCCTGCCCAAAATTATCGAGAACCTAAGCAAGGGCGAGTTCCAG
ACACAGAAGGAGGCTGCCTGGGCCATCAGCAATCTGACCATTAGCGGCAA
CCGCGAACAGGTCTTCACCTTGATCAAGGAGGGCGTCATTCCGCCATTCT
GTGACCTCCTTTCATGCCAGGATACGCAAGTTATAAATGTTGTTTTGGAT
GGTCTGAACAATATGTTAAAAGTGGCCGATTCTCATGTTGAGGCGGTGGC
CAACTGCATTGAGGAATGCGAGGGCCTGGCCAAGATCGAGCGTCTGCAGA
GCCACGAAAACGTTGAAATCTACAAACTAGCTTATGAGATCATCGATCAA
TACTTCACTGATGAGGGCGAACAGACTAACATGGCACCGACCTCCGACGG
CGCACAATACAATTTCGATCCACACGCCGATAGGCTAACGATGAACTCAT
TTAACTTTGCAAGCTTTCTAGACCAT
BO04566.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:09:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Kap-alpha3-RD | 1545 | CG9423-PD | 1..1542 | 17..1558 | 7710 | 100 | Plus |
| Kap-alpha3-RC | 1545 | CG9423-PC | 1..1542 | 17..1558 | 7710 | 100 | Plus |
| Kap-alpha3-RB | 1545 | CG9423-PB | 1..1542 | 17..1558 | 7710 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:09:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Kap-alpha3-RD | 2261 | CG9423-RD | 197..1748 | 7..1558 | 7715 | 99.8 | Plus |
| Kap-alpha3-RC | 2663 | CG9423-RC | 119..1670 | 7..1558 | 7715 | 99.8 | Plus |
| Kap-alpha3-RB | 2728 | CG9423-RB | 184..1735 | 7..1558 | 7715 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:09:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 9575875..9576709 | 1290..456 | 4175 | 100 | Minus |
| 3R | 32079331 | 3R | 9576766..9577148 | 459..77 | 1915 | 100 | Minus |
| 3R | 32079331 | 3R | 9575635..9575817 | 1466..1284 | 900 | 99.5 | Minus |
| 3R | 32079331 | 3R | 9575477..9575571 | 1558..1464 | 475 | 100 | Minus |
| 3R | 32079331 | 3R | 9577207..9577277 | 77..7 | 310 | 95.8 | Minus |
| 2L | 23513712 | 2L | 10058201..10058255 | 387..441 | 200 | 90.9 | Plus |
Blast to na_te.dros performed on 2014-11-27 13:09:31 has no hits.
BO04566.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:40:11 Download gff for
BO04566.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Kap-alpha3-RC | 1..1545 | 17..1562 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:09:15 Download gff for
BO04566.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Kap-alpha3-RC | 170..1730 | 7..1567 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 12:01:27 Download gff for
BO04566.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Kap-alpha3-RB | 194..1735 | 17..1560 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:40:12 Download gff for
BO04566.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Kap-alpha3-RC | 170..1730 | 7..1567 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:12:08 Download gff for
BO04566.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Kap-alpha3-RB | 194..1735 | 17..1560 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:12:08 Download gff for
BO04566.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 9575475..9575569 | 1466..1560 | 97 | <- | Minus |
| 3R | 9575636..9575812 | 1289..1465 | 100 | <- | Minus |
| 3R | 9575877..9576707 | 458..1288 | 100 | <- | Minus |
| 3R | 9576768..9577148 | 77..457 | 100 | <- | Minus |
| 3R | 9577208..9577267 | 17..76 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 12:01:27 Download gff for
BO04566.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 5401197..5401291 | 1466..1560 | 97 | <- | Minus |
| arm_3R | 5401358..5401534 | 1289..1465 | 100 | <- | Minus |
| arm_3R | 5401599..5402429 | 458..1288 | 100 | <- | Minus |
| arm_3R | 5402490..5402870 | 77..457 | 100 | <- | Minus |
| arm_3R | 5402930..5402989 | 17..76 | 100 | | Minus |
BO04566.pep Sequence
Translation from 16 to 1576
> BO04566.pep
MTSMEQNRLQNFKNKGKDQDEMRRRRNEVTVELRKNKREETILKRRNVPN
LDSNTDEEEQLSSSIDLKKLAKAAADATKPEQQLAAVQAARKLLSSDKNP
PINDLIQSDILPILVECLKQHNHTMLQFEAAWALTNIASGTSAQTNEVVA
AGAVPLFLQLLNSPAPNVCEQAVWALGNIIGDGPLLRDFVIKHGVVQPLL
SFIKPDIPITFLRNVTWVIVNLCRNKDPAPPTATIHEILPALNVLIHHTD
TNILVDTVWAISYLTDGGNDQIQMVIESGVVPKLIPLLGNSEVKVQTAAL
RAVGNIVTGSDEQTQVVLNYDALSYFPGLLSHPKEKIRKEAVWFLSNITA
GNQSQVQAVINVGLLPKIIENLSKGEFQTQKEAAWAISNLTISGNREQVF
TLIKEGVIPPFCDLLSCQDTQVINVVLDGLNNMLKVADSHVEAVANCIEE
CEGLAKIERLQSHENVEIYKLAYEIIDQYFTDEGEQTNMAPTSDGAQYNF
DPHADRLTMNSFNFASFLDH
BO04566.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:35:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Kap-alpha3-PD | 514 | CG9423-PD | 1..514 | 1..514 | 2630 | 100 | Plus |
| Kap-alpha3-PC | 514 | CG9423-PC | 1..514 | 1..514 | 2630 | 100 | Plus |
| Kap-alpha3-PB | 514 | CG9423-PB | 1..514 | 1..514 | 2630 | 100 | Plus |
| Kap-alpha3-PA | 514 | CG9423-PA | 1..514 | 1..514 | 2630 | 100 | Plus |
| Kap-alpha1-PA | 543 | CG8548-PA | 1..543 | 4..514 | 1185 | 45.9 | Plus |
