Clone Sequence Records
BO04571.3prime Sequence
913 bp (756 high quality bases) assembled on 2005-12-01
> BO04571.3prime
ATGGTCTAGAAAGCTTGCGCCCTCGTACTCCACATCGGCATCTGTGTACA
TCTTGGCTGGCTGCCCAGCCAGGCCATTATCCGTCTCCATCATTTCCACA
TCGCGACAACTGGCCGCCTGGAGCTCCCTTCTCACATCGGGTGTAATCTT
GAAATGGCTCTTCTTTTTGAGCAGCTGCAGCAGTGCATCCCGCTGTTCGG
AGGATATATCGTTCTTGTATCGCTGGGCAAAGGTGAGCAGGCTCTGGTGC
CATAGCACTGGTAACTCACGCTTGTCGTTCTCGAATCTTAGAAAATGAAA
GACTGCGGCATCCACGACGCGATAAGGCAGAGCATACCGCTTGTCCAGAA
AGTAACGGATGAATATGGAGTTAGCTCCCGAATAGGCCATCTCACAGATC
TTCAGCAGGCAGGCGGAGGAGTGCAGGACGGGAATAGAGCTGCGGGCCAC
CACACTGCCGAAAATGATGGCCTCGCGCAATGTGCAATCGCCGCCCTCGA
GCAGCGGCAGAATGATTCCCTTCATGAAGGCAGCCGGCTTGAAGAGAGCC
CTCTTCAGTGCATTGTACAGATGCATATTGAGCTTCTTATATTCGCAGAG
ATCATCACGAACTCGTGGCAGGAGCACCAGGTTATAGAACCTCTGGGCCA
TTGCCTGCGACAGCACCGAGCAGAAGATGCGGGTGCCTTGGAACATGGCG
GCAGCGCTCCAATTATGGGGCTCAGTGATGAACAAGATCTGCTCCCAATT
GCGCAGCTTGGGTATGATCTTGAAGGCCTTAGGGATCTTGCCACTGCGAT
AGCGTTTCAACACATCGCGCACGCCCTCGTACATCTCCTTCACTTTCGGG
TCGATTTCCTCGATCTTTAGTGAGCCCTCGTCAGAGATCTTAGTGTGTAT
GTCGGGCTCCTTC
BO04571.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:07:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1430-PA | 1311 | bys-RA | 414..1308 | 913..19 | 4450 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 19:26:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
bys-RA | 1518 | CG1430-RA | 526..1420 | 913..19 | 4460 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 19:26:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 7902533..7903159 | 913..287 | 3120 | 99.8 | Minus |
X | 23542271 | X | 7903398..7903545 | 166..19 | 740 | 100 | Minus |
X | 23542271 | X | 7903214..7903335 | 288..167 | 610 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-04 19:26:42 has no hits.
BO04571.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:06:14 Download gff for
BO04571.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
bys-PA | 414..1311 | 16..913 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:20:44 Download gff for
BO04571.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1430-PA | 414..1311 | 16..913 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:17:14 Download gff for
BO04571.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
bys-RA | 526..1426 | 13..913 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:33:09 Download gff for
BO04571.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
bys-RA | 526..1426 | 13..913 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 21:33:09 Download gff for
BO04571.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 7902533..7903159 | 287..913 | 99 | -> | Minus |
X | 7903216..7903335 | 167..286 | 100 | -> | Minus |
X | 7903398..7903551 | 13..166 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:17:14 Download gff for
BO04571.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 7796566..7797192 | 287..913 | 99 | -> | Minus |
arm_X | 7797249..7797368 | 167..286 | 100 | -> | Minus |
arm_X | 7797431..7797584 | 13..166 | 98 | | Minus |
BO04571.5prime Sequence
947 bp (803 high quality bases) assembled on 2005-11-29
> BO04571.5prime
GAAGTTATCAGTCGACATGGGTAAGCCGAAGAAGGCCAACGTGGCAACGA
TTAAAAATGTGAATCTGGAGAAGCAGATCACCGAGGGCAGGGTGGCGAAA
AACAAGAACAAGGATAAAGTCAAACTGCGGGCCGAGGAATCGGCGAACAT
CGATGCCAGAAGTAGTCAAAAGATCCTGGCCGCGGCCAAGCTGCAGCAGT
TGGAGCTGGACGAAGAGAACTTTCCCAGTCTGGTGACCGTCAAGAAAGTC
AACTTCAGTTTGAATGATGGCCATGTCAAGGAGGATGAAGAGGTCAACGA
GACTGACCTCATGGCCGACCTGGACATGGACGAAGACGATGTGGCCGCGT
TCGAGCGCTTCCAGCAGCCAGCACAGGAGGGCAAGCGTACGTTGCACCTG
TCCAAGATGATCATGCAGAAGATCCAGGAGAAGGAGGCCGACATACACAC
TAAGATCTCTGACGAGGGCTCACTAAAGATCGAGGAAATCGACCCGAAAG
TGAAGGAGATGTACGAGGGCGTGCGCGATGTGTTGAAACGCTATCGCAGT
GGCAAGATCCCTAAGGCCTTCAAGATCATACCCAAGCTGCGCAATTGGGA
GCAGATCTTGTTCATCACTGAGCCCCATAATTGGAGCGCTGCCGCCATGT
TCCAAGGCACCCGCATCTTCTGCTCGGTGCTGTCGCAGGCAATGGCCCAG
AGGTTCTATAACCTGGTGCTCCTGCCACGAGTTCGTGATGATCTCTGCGA
ATATAAGAAGCTCAATATGCATCTGTACAATGCACTGAAGAGGGCTCTCT
TCAAGCCGGCTGCCTTCATGAAGGGAATCATTCTGCCGCTGCTCGAGGGC
GGCGATTGCACATTGCGCGAGGCCATCATTTTCGGCAGTGTGGTGGCCCG
CAGCTCTATTCCCGTCCTGCACTCCTCCGCCTGCCTGCTGAAAATCT
BO04571.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:07:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1430-PA | 1311 | bys-RA | 1..926 | 17..942 | 4630 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 13:28:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
bys-RA | 1518 | CG1430-RA | 113..1043 | 17..947 | 4640 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 13:28:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 7902367..7903050 | 264..947 | 3405 | 99.9 | Plus |
X | 23542271 | X | 7901992..7902120 | 17..145 | 645 | 100 | Plus |
X | 23542271 | X | 7902184..7902302 | 145..263 | 595 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 13:28:27 has no hits.
BO04571.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:06:15 Download gff for
BO04571.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
bys-PA | 1..931 | 17..947 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:20:45 Download gff for
BO04571.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1430-PA | 1..931 | 17..947 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 17:42:21 Download gff for
BO04571.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
bys-RA | 101..1043 | 6..947 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:04:11 Download gff for
BO04571.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
bys-RA | 101..1043 | 6..947 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 16:04:11 Download gff for
BO04571.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 7901980..7902120 | 6..145 | 96 | -> | Plus |
X | 7902185..7902302 | 146..263 | 100 | -> | Plus |
X | 7902367..7903050 | 264..947 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 17:42:21 Download gff for
BO04571.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 7796013..7796153 | 6..145 | 96 | -> | Plus |
arm_X | 7796218..7796335 | 146..263 | 100 | -> | Plus |
arm_X | 7796400..7797083 | 264..947 | 99 | | Plus |
BO04571.complete Sequence
1342 bp (1342 high quality bases) assembled on 2005-09-08
GenBank Submission: FJ629802
> BO04571.complete
GAAGTTATCAGTCGACATGGGTAAGCCGAAGAAGGCCAACGTGGCAACGA
TTAAAAATGTGAATCTGGAGAAGCAGATCACCGAGGGCAGGGTGGCGAAA
AACAAGAACAAGGATAAAGTCAAACTGCGGGCCGAGGAATCGGCGAACAT
CGATGCCAGAAGTAGTCAAAAGATCCTGGCCGCGGCCAAGCTGCAGCAGT
TGGAGCTGGACGAAGAGAACTTTCCCAGTCTGGTGACCGTCAAGAAAGTC
AACTTCAGTTTGAATGATGGCCATGTCAAGGAGGATGAAGAGGTCAACGA
GACTGACCTCATGGCCGACCTGGACATGGACGAAGACGATGTGGCCGCGT
TCGAGCGCTTCCAGCAGCCAGCACAGGAGGGCAAGCGTACGTTGCACCTG
TCCAAGATGATCATGCAGAAGATCCAGGAGAAGGAGGCCGACATACACAC
TAAGATCTCTGACGAGGGCTCACTAAAGATCGAGGAAATCGACCCGAAAG
TGAAGGAGATGTACGAGGGCGTGCGCGATGTGTTGAAACGCTATCGCAGT
GGCAAGATCCCTAAGGCCTTCAAGATCATACCCAAGCTGCGCAATTGGGA
GCAGATCTTGTTCATCACTGAGCCCCATAATTGGAGCGCTGCCGCCATGT
TCCAAGGCACCCGCATCTTCTGCTCGGTGCTGTCGCAGGCAATGGCCCAG
AGGTTCTATAACCTGGTGCTCCTGCCACGAGTTCGTGATGATCTCTGCGA
ATATAAGAAGCTCAATATGCATCTGTACAATGCACTGAAGAGGGCTCTCT
TCAAGCCGGCTGCCTTCATGAAGGGAATCATTCTGCCGCTGCTCGAGGGC
GGCGATTGCACATTGCGCGAGGCCATCATTTTCGGCAGTGTGGTGGCCCG
CAGCTCTATTCCCGTCCTGCACTCCTCCGCCTGCCTGCTGAAGATCTGTG
AGATGGCCTATTCGGGAGCTAACTCCATATTCATCCGTTACTTTCTGGAC
AAGCGGTATGCTCTGCCTTATCGCGTCGTGGATGCCGCAGTCTTTCATTT
TCTAAGATTCGAGAACGACAAGCGTGAGTTACCAGTGCTATGGCACCAGA
GCCTGCTCACCTTTGCCCAGCGATACAAGAACGATATATCCTCCGAACAG
CGGGATGCACTGCTGCAGCTGCTCAAAAAGAAGAGCCATTTCAAGATTAC
ACCCGATGTGAGAAGGGAGCTCCAGGCGGCCAGTTGTCGCGATGTGGAAA
TGATGGAGACGGATAATGGCCTGGCTGGGCAGCCAGCCAAGATGTACACA
GATGCCGATGTGGAGTACGAGGGCGCAAGCTTTCTAGACCAT
BO04571.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:09:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
bys-RA | 1311 | CG1430-PA | 1..1308 | 17..1324 | 6540 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:09:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
bys-RA | 1518 | CG1430-RA | 113..1420 | 17..1324 | 6540 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:09:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 7902367..7903159 | 264..1056 | 3965 | 100 | Plus |
X | 23542271 | X | 7903398..7903545 | 1177..1324 | 740 | 100 | Plus |
X | 23542271 | X | 7901992..7902120 | 17..145 | 645 | 100 | Plus |
X | 23542271 | X | 7903214..7903335 | 1055..1176 | 610 | 100 | Plus |
X | 23542271 | X | 7902184..7902302 | 145..263 | 595 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:09:07 has no hits.
BO04571.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:40:13 Download gff for
BO04571.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
bys-RA | 1..1311 | 17..1327 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:09:17 Download gff for
BO04571.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
bys-RA | 79..1404 | 6..1330 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:03:55 Download gff for
BO04571.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
bys-RA | 113..1420 | 17..1326 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:40:13 Download gff for
BO04571.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
bys-RA | 79..1404 | 6..1330 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:15:56 Download gff for
BO04571.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
bys-RA | 113..1420 | 17..1326 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:15:56 Download gff for
BO04571.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 7901992..7902120 | 17..145 | 100 | -> | Plus |
X | 7902185..7902302 | 146..263 | 100 | -> | Plus |
X | 7902367..7903159 | 264..1056 | 100 | -> | Plus |
X | 7903216..7903335 | 1057..1176 | 100 | -> | Plus |
X | 7903398..7903545 | 1177..1326 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:03:55 Download gff for
BO04571.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 7796025..7796153 | 17..145 | 100 | -> | Plus |
arm_X | 7796218..7796335 | 146..263 | 100 | -> | Plus |
arm_X | 7796400..7797192 | 264..1056 | 100 | -> | Plus |
arm_X | 7797249..7797368 | 1057..1176 | 100 | -> | Plus |
arm_X | 7797431..7797578 | 1177..1326 | 98 | | Plus |
BO04571.pep Sequence
Translation from 16 to 1342
> BO04571.pep
MGKPKKANVATIKNVNLEKQITEGRVAKNKNKDKVKLRAEESANIDARSS
QKILAAAKLQQLELDEENFPSLVTVKKVNFSLNDGHVKEDEEVNETDLMA
DLDMDEDDVAAFERFQQPAQEGKRTLHLSKMIMQKIQEKEADIHTKISDE
GSLKIEEIDPKVKEMYEGVRDVLKRYRSGKIPKAFKIIPKLRNWEQILFI
TEPHNWSAAAMFQGTRIFCSVLSQAMAQRFYNLVLLPRVRDDLCEYKKLN
MHLYNALKRALFKPAAFMKGIILPLLEGGDCTLREAIIFGSVVARSSIPV
LHSSACLLKICEMAYSGANSIFIRYFLDKRYALPYRVVDAAVFHFLRFEN
DKRELPVLWHQSLLTFAQRYKNDISSEQRDALLQLLKKKSHFKITPDVRR
ELQAASCRDVEMMETDNGLAGQPAKMYTDADVEYEGASFLDH
BO04571.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:35:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
bys-PA | 436 | CG1430-PA | 1..436 | 1..436 | 2225 | 100 | Plus |