Clone Sequence Records
BO04578.3prime Sequence
929 bp (827 high quality bases) assembled on 2005-12-01
> BO04578.3prime
ATGGTCTAGAAAGCTTGCGGTATGATTATCCATGAACTGCAGTTCCGACC
ACAGGAGCAGGGCGTTCGGGGGCAAAGGTCGCGGCTGCGGCGAAAGCAAC
ATCACTGCCTGTCTTTCCATATCCACTTCGGTTACGCAACAAAAGCCGGC
CACATTGGTGCCAATCACATCGTCCTCCACGGACTCGGCAAAGCTGAGGG
CCAGCACATGATGGATTAGGGCGGGCGTGGGTGTAACCGCCACCACCTTG
GTCTTGTTGTCCTCCGCCTTCATTCCAATTGGCATGCAGGAGTCGGGCAG
CGGCGGTGCGCCGATCTTGTAGAGTCGCAGGTCCTGGAACTTCACCTCGA
AGCTGAACGGATAGAAGGGCGCCCTTGTATTGCCGTAGAAGTACTCCTTG
ATGCGCTGATCCCTCGCCTCGTGTCGCAGTTCCTTGCTGCGCTCGACGAC
GCCGCCGCTCTTGGGCAGCAGTACCACATGAACTCCCTTGGGAACATCTC
GAAGCAGCTCGTTGTATAGTCGCTCCTGGTCCAGAACAAAGATGGCACAG
GCTCCATAGGCTTTGGCCGCGTGCAACAGGTGCGCGTAGCCGGATCCCTT
TACCCAGCCACAAGTGTTTATAATAATGCCAGAGCTTTTTGTTCGCTTGT
TGCTATTCAGAGATTGCAGTGTTACCTCTGCCATTTTGGAAACCACGGCA
TTGTACAGCACGCTGTTTCCGCTGGGAGACTTATGGCCAAAGTGATAGAC
CAGCGGCGCTGTCTTGGCGAATCCCTCCTCAACGTTCGCCGGTCGCTCGA
TGAGAATGGTGGCCACACTCCCGGAAATGGCAATCGAGCCCTGTCCAACA
TCCAGGTCGGCGTACAGCGGTCGACGACCCACGCGCACAGCATAGTTAAG
CAGGATGCGGCACAGAGTGCTTCTGCCCA
BO04578.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:08:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5970-PA | 1272 | CG5970-RA | 367..1269 | 921..19 | 4515 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:25:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
cbc-RA | 1654 | CG5970-RA | 466..1376 | 929..19 | 4525 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:24:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 13483973..13484480 | 134..641 | 2540 | 100 | Plus |
2R | 25286936 | 2R | 13484571..13484858 | 642..929 | 1410 | 99.3 | Plus |
2R | 25286936 | 2R | 13483790..13483904 | 19..133 | 575 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 06:24:58 has no hits.
BO04578.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:06:28 Download gff for
BO04578.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5970-PA | 360..1272 | 18..928 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:21:02 Download gff for
BO04578.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5970-PA | 360..1272 | 18..928 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:26:55 Download gff for
BO04578.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cbc-RA | 467..1383 | 10..928 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:02:37 Download gff for
BO04578.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cbc-RA | 467..1383 | 10..928 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:02:37 Download gff for
BO04578.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 13483782..13483904 | 10..133 | 96 | <- | Plus |
2R | 13483973..13484480 | 134..641 | 100 | <- | Plus |
2R | 13484571..13484857 | 642..928 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:26:55 Download gff for
BO04578.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 9371287..9371409 | 10..133 | 96 | <- | Plus |
arm_2R | 9371478..9371985 | 134..641 | 100 | <- | Plus |
arm_2R | 9372076..9372362 | 642..928 | 99 | | Plus |
BO04578.5prime Sequence
877 bp (787 high quality bases) assembled on 2005-11-29
> BO04578.5prime
GAAGTTATCAGTCGACATGTCGGAGGACCAAGGCAAAGACTACACACTGG
AGTCCGACTCCGAGCTGCGCTTTGAAATCGAGCAGAAGGATGCCAAAGTG
CTGGTGTCCCTGGTCAGTGGATTTGCGGAGCTGTTCGGCACGGAGCTGGT
GAAGAAAAAGCAGTACGAGTTCGGCGTGGGCGCCAAGGTGGCCATCTTCA
CGTACCAGGGCTGTGTACTCCACGTCTCCGGCAAAATGGACGTGTGCTAC
ATCTCCAAGGAGACGCCAATGGTGCAGTACGTCAACTGTCATGCGGCACT
GGAGCAGTTCCGCATGGAGGCCGAGGAGAAGGATCGCTACGGACCAGTGG
CCATGGTCGTCGGTCCCATGGACGTGGGCAAGAGCACTCTGTGCCGCATC
CTGCTTAACTATGCTGTGCGCGTGGGTCGTCGACCGCTGTACGCCGACCT
GGATGTTGGACAGGGCTCGATTGCCATTTCCGGGAGTGTGGCCACCATTC
TCATCGAGCGACCGGCGAACGTTGAGGAGGGATTCGCCAAGACAGCGCCG
CTGGTCTATCACTTTGGCCATAAGTCTCCCAGCGGAAACAGCGTGCTGTA
CAATGCCGTGGTTTCCAAAATGGCAGAGGTAACACTGCAATCTCTGAATA
GCAACAAGCGAACAAAAAGCTCTGGCATTATTATAAACACTTGTGGCTGG
GTAAAGGGATCCGGCTACGCGCACCTGTTGCACGCGGCCAAAGCCTATGG
AGCCTGTGCCATCTTTGTTCTGGACCAGGAGCGACTATACAACGAGCTGC
TTCGAGATGTTCCCAAGGGAGTTCATGTGGTACTGCTGCCCAAGAGCGGC
GGCGTCGTCAAGCGCAGCAAGGAACTG
BO04578.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:08:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5970-PA | 1272 | CG5970-RA | 1..861 | 17..877 | 4280 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 13:28:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
cbc-RA | 1654 | CG5970-RA | 107..968 | 16..877 | 4295 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 13:28:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 13484571..13485123 | 662..110 | 2765 | 100 | Minus |
2R | 25286936 | 2R | 13484266..13484480 | 877..663 | 1060 | 99.5 | Minus |
2R | 25286936 | 2R | 13485192..13485285 | 109..16 | 470 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 13:28:33 has no hits.
BO04578.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:06:29 Download gff for
BO04578.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5970-PA | 1..861 | 17..877 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:21:03 Download gff for
BO04578.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5970-PA | 1..861 | 17..877 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 17:42:24 Download gff for
BO04578.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cbc-RA | 96..968 | 1..877 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:04:29 Download gff for
BO04578.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cbc-RA | 96..968 | 1..877 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 16:04:29 Download gff for
BO04578.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 13484266..13484480 | 663..877 | 99 | <- | Minus |
2R | 13484571..13485123 | 110..662 | 100 | <- | Minus |
2R | 13485192..13485296 | 1..109 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 17:42:24 Download gff for
BO04578.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 9371771..9371985 | 663..877 | 99 | <- | Minus |
arm_2R | 9372076..9372628 | 110..662 | 100 | <- | Minus |
arm_2R | 9372697..9372801 | 1..109 | 95 | | Minus |
BO04578.complete Sequence
1303 bp (1303 high quality bases) assembled on 2005-09-08
GenBank Submission: FJ629803
> BO04578.complete
GAAGTTATCAGTCGACATGTCGGAGGACCAAGGCAAAGACTACACACTGG
AGTCCGACTCCGAGCTGCGCTTTGAAATCGAGCAGAAGGATGCCAAAGTG
CTGGTGTCCCTGGTCAGTGGATTTGCGGAGCTGTTCGGCACGGAGCTGGT
GAAGAAAAAGCAGTACGAGTTCGGCGTGGGCGCCAAGGTGGCCATCTTCA
CGTACCAGGGCTGTGTACTCCACGTCTCCGGCAAAATGGACGTGTGCTAC
ATCTCCAAGGAGACGCCAATGGTGCAGTACGTCAACTGTCATGCGGCACT
GGAGCAGTTCCGCATGGAGGCCGAGGAGAAGGATCGCTACGGACCAGTGG
CCATGGTCGTCGGTCCCATGGACGTGGGCAAGAGCACTCTGTGCCGCATC
CTGCTTAACTATGCTGTGCGCGTGGGTCGTCGACCGCTGTACGCCGACCT
GGATGTTGGACAGGGCTCGATTGCCATTTCCGGGAGTGTGGCCACCATTC
TCATCGAGCGACCGGCGAACGTTGAGGAGGGATTCGCCAAGACAGCGCCG
CTGGTCTATCACTTTGGCCATAAGTCTCCCAGCGGAAACAGCGTGCTGTA
CAATGCCGTGGTTTCCAAAATGGCAGAGGTAACACTGCAATCTCTGAATA
GCAACAAGCGAACAAAAAGCTCTGGCATTATTATAAACACTTGTGGCTGG
GTAAAGGGATCCGGCTACGCGCACCTGTTGCACGCGGCCAAAGCCTATGG
AGCCTGTGCCATCTTTGTTCTGGACCAGGAGCGACTATACAACGAGCTGC
TTCGAGATGTTCCCAAGGGAGTTCATGTGGTACTGCTGCCCAAGAGCGGC
GGCGTCGTCGAGCGCAGCAAGGAACTGCGACACGAGGCGAGGGATCAGCG
CATCAAGGAGTACTTCTACGGCAATACAAGGGCGCCCTTCTATCCGTTCA
GCTTCGAGGTGAAGTTCCAGGACCTGCGACTCTACAAGATCGGCGCACCG
CCGCTGCCCGACTCCTGCATGCCAATTGGAATGAAGGCGGAGGACAACAA
GACCAAGGTGGTGGCGGTTACACCCACGCCCGCCCTAATCCATCATGTGC
TGGCCCTCAGCTTTGCCGAGTCCGTGGAGGACGATGTGATTGGCACCAAT
GTGGCCGGCTTTTGTTGCGTAACCGAAGTGGATATGGAAAGACAGGCAGT
GATGTTGCTTTCGCCGCAGCCGCGACCTTTGCCCCCGAACGCCCTGCTCC
TGTGGTCGGAACTGCAGTTCATGGATAATCATACCGCAAGCTTTCTAGAC
CAT
BO04578.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:01:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
cbc-RA | 1272 | CG5970-PA | 1..1269 | 17..1285 | 6345 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:01:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
cbc-RA | 1654 | CG5970-RA | 107..1376 | 16..1285 | 6350 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:01:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 13484571..13485123 | 662..110 | 2765 | 100 | Minus |
2R | 25286936 | 2R | 13483973..13484480 | 1170..663 | 2540 | 100 | Minus |
2R | 25286936 | 2R | 13483790..13483904 | 1285..1171 | 575 | 100 | Minus |
2R | 25286936 | 2R | 13485192..13485285 | 109..16 | 470 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:01:47 has no hits.
BO04578.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:40:16 Download gff for
BO04578.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5970-RA | 1..1272 | 17..1286 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:09:22 Download gff for
BO04578.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5970-RA | 101..1388 | 1..1294 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:16:18 Download gff for
BO04578.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cbc-RA | 108..1376 | 17..1287 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:40:17 Download gff for
BO04578.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5970-RA | 101..1388 | 1..1294 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:24:55 Download gff for
BO04578.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cbc-RA | 108..1376 | 17..1287 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:24:55 Download gff for
BO04578.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 13483786..13483904 | 1171..1287 | 98 | <- | Minus |
2R | 13483973..13484480 | 663..1170 | 100 | <- | Minus |
2R | 13484571..13485123 | 110..662 | 100 | <- | Minus |
2R | 13485192..13485284 | 17..109 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:16:18 Download gff for
BO04578.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 9371291..9371409 | 1171..1287 | 98 | <- | Minus |
arm_2R | 9371478..9371985 | 663..1170 | 100 | <- | Minus |
arm_2R | 9372076..9372628 | 110..662 | 100 | <- | Minus |
arm_2R | 9372697..9372789 | 17..109 | 100 | | Minus |
BO04578.pep Sequence
Translation from 16 to 1303
> BO04578.pep
MSEDQGKDYTLESDSELRFEIEQKDAKVLVSLVSGFAELFGTELVKKKQY
EFGVGAKVAIFTYQGCVLHVSGKMDVCYISKETPMVQYVNCHAALEQFRM
EAEEKDRYGPVAMVVGPMDVGKSTLCRILLNYAVRVGRRPLYADLDVGQG
SIAISGSVATILIERPANVEEGFAKTAPLVYHFGHKSPSGNSVLYNAVVS
KMAEVTLQSLNSNKRTKSSGIIINTCGWVKGSGYAHLLHAAKAYGACAIF
VLDQERLYNELLRDVPKGVHVVLLPKSGGVVERSKELRHEARDQRIKEYF
YGNTRAPFYPFSFEVKFQDLRLYKIGAPPLPDSCMPIGMKAEDNKTKVVA
VTPTPALIHHVLALSFAESVEDDVIGTNVAGFCCVTEVDMERQAVMLLSP
QPRPLPPNALLLWSELQFMDNHTASFLDH
BO04578.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:34:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
cbc-PA | 423 | CG5970-PA | 1..423 | 1..423 | 2191 | 100 | Plus |