Clone BO04578 Report

Search the DGRC for BO04578

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:45
Well:78
Vector:pDNR-Dual
Associated Gene/Transcriptcbc-RA
Protein status:BO04578.pep: validated full length
Sequenced Size:1303

Clone Sequence Records

BO04578.3prime Sequence

929 bp (827 high quality bases) assembled on 2005-12-01

> BO04578.3prime
ATGGTCTAGAAAGCTTGCGGTATGATTATCCATGAACTGCAGTTCCGACC
ACAGGAGCAGGGCGTTCGGGGGCAAAGGTCGCGGCTGCGGCGAAAGCAAC
ATCACTGCCTGTCTTTCCATATCCACTTCGGTTACGCAACAAAAGCCGGC
CACATTGGTGCCAATCACATCGTCCTCCACGGACTCGGCAAAGCTGAGGG
CCAGCACATGATGGATTAGGGCGGGCGTGGGTGTAACCGCCACCACCTTG
GTCTTGTTGTCCTCCGCCTTCATTCCAATTGGCATGCAGGAGTCGGGCAG
CGGCGGTGCGCCGATCTTGTAGAGTCGCAGGTCCTGGAACTTCACCTCGA
AGCTGAACGGATAGAAGGGCGCCCTTGTATTGCCGTAGAAGTACTCCTTG
ATGCGCTGATCCCTCGCCTCGTGTCGCAGTTCCTTGCTGCGCTCGACGAC
GCCGCCGCTCTTGGGCAGCAGTACCACATGAACTCCCTTGGGAACATCTC
GAAGCAGCTCGTTGTATAGTCGCTCCTGGTCCAGAACAAAGATGGCACAG
GCTCCATAGGCTTTGGCCGCGTGCAACAGGTGCGCGTAGCCGGATCCCTT
TACCCAGCCACAAGTGTTTATAATAATGCCAGAGCTTTTTGTTCGCTTGT
TGCTATTCAGAGATTGCAGTGTTACCTCTGCCATTTTGGAAACCACGGCA
TTGTACAGCACGCTGTTTCCGCTGGGAGACTTATGGCCAAAGTGATAGAC
CAGCGGCGCTGTCTTGGCGAATCCCTCCTCAACGTTCGCCGGTCGCTCGA
TGAGAATGGTGGCCACACTCCCGGAAATGGCAATCGAGCCCTGTCCAACA
TCCAGGTCGGCGTACAGCGGTCGACGACCCACGCGCACAGCATAGTTAAG
CAGGATGCGGCACAGAGTGCTTCTGCCCA

BO04578.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:08:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG5970-PA 1272 CG5970-RA 367..1269 921..19 4515 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:25:02
Subject Length Description Subject Range Query Range Score Percent Strand
cbc-RA 1654 CG5970-RA 466..1376 929..19 4525 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:24:54
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 13483973..13484480 134..641 2540 100 Plus
2R 25286936 2R 13484571..13484858 642..929 1410 99.3 Plus
2R 25286936 2R 13483790..13483904 19..133 575 100 Plus
Blast to na_te.dros performed on 2015-02-12 06:24:58 has no hits.

BO04578.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:06:28 Download gff for BO04578.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5970-PA 360..1272 18..928 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:21:02 Download gff for BO04578.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5970-PA 360..1272 18..928 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:26:55 Download gff for BO04578.3prime
Subject Subject Range Query Range Percent Splice Strand
cbc-RA 467..1383 10..928 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:02:37 Download gff for BO04578.3prime
Subject Subject Range Query Range Percent Splice Strand
cbc-RA 467..1383 10..928 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:02:37 Download gff for BO04578.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 13483782..13483904 10..133 96 <- Plus
2R 13483973..13484480 134..641 100 <- Plus
2R 13484571..13484857 642..928 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:26:55 Download gff for BO04578.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 9371287..9371409 10..133 96 <- Plus
arm_2R 9371478..9371985 134..641 100 <- Plus
arm_2R 9372076..9372362 642..928 99   Plus

BO04578.5prime Sequence

877 bp (787 high quality bases) assembled on 2005-11-29

> BO04578.5prime
GAAGTTATCAGTCGACATGTCGGAGGACCAAGGCAAAGACTACACACTGG
AGTCCGACTCCGAGCTGCGCTTTGAAATCGAGCAGAAGGATGCCAAAGTG
CTGGTGTCCCTGGTCAGTGGATTTGCGGAGCTGTTCGGCACGGAGCTGGT
GAAGAAAAAGCAGTACGAGTTCGGCGTGGGCGCCAAGGTGGCCATCTTCA
CGTACCAGGGCTGTGTACTCCACGTCTCCGGCAAAATGGACGTGTGCTAC
ATCTCCAAGGAGACGCCAATGGTGCAGTACGTCAACTGTCATGCGGCACT
GGAGCAGTTCCGCATGGAGGCCGAGGAGAAGGATCGCTACGGACCAGTGG
CCATGGTCGTCGGTCCCATGGACGTGGGCAAGAGCACTCTGTGCCGCATC
CTGCTTAACTATGCTGTGCGCGTGGGTCGTCGACCGCTGTACGCCGACCT
GGATGTTGGACAGGGCTCGATTGCCATTTCCGGGAGTGTGGCCACCATTC
TCATCGAGCGACCGGCGAACGTTGAGGAGGGATTCGCCAAGACAGCGCCG
CTGGTCTATCACTTTGGCCATAAGTCTCCCAGCGGAAACAGCGTGCTGTA
CAATGCCGTGGTTTCCAAAATGGCAGAGGTAACACTGCAATCTCTGAATA
GCAACAAGCGAACAAAAAGCTCTGGCATTATTATAAACACTTGTGGCTGG
GTAAAGGGATCCGGCTACGCGCACCTGTTGCACGCGGCCAAAGCCTATGG
AGCCTGTGCCATCTTTGTTCTGGACCAGGAGCGACTATACAACGAGCTGC
TTCGAGATGTTCCCAAGGGAGTTCATGTGGTACTGCTGCCCAAGAGCGGC
GGCGTCGTCAAGCGCAGCAAGGAACTG

BO04578.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:08:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG5970-PA 1272 CG5970-RA 1..861 17..877 4280 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 13:28:34
Subject Length Description Subject Range Query Range Score Percent Strand
cbc-RA 1654 CG5970-RA 107..968 16..877 4295 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 13:28:32
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 13484571..13485123 662..110 2765 100 Minus
2R 25286936 2R 13484266..13484480 877..663 1060 99.5 Minus
2R 25286936 2R 13485192..13485285 109..16 470 100 Minus
Blast to na_te.dros performed on 2015-02-13 13:28:33 has no hits.

BO04578.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:06:29 Download gff for BO04578.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5970-PA 1..861 17..877 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:21:03 Download gff for BO04578.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5970-PA 1..861 17..877 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 17:42:24 Download gff for BO04578.5prime
Subject Subject Range Query Range Percent Splice Strand
cbc-RA 96..968 1..877 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:04:29 Download gff for BO04578.5prime
Subject Subject Range Query Range Percent Splice Strand
cbc-RA 96..968 1..877 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 16:04:29 Download gff for BO04578.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 13484266..13484480 663..877 99 <- Minus
2R 13484571..13485123 110..662 100 <- Minus
2R 13485192..13485296 1..109 95   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 17:42:24 Download gff for BO04578.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 9371771..9371985 663..877 99 <- Minus
arm_2R 9372076..9372628 110..662 100 <- Minus
arm_2R 9372697..9372801 1..109 95   Minus

BO04578.complete Sequence

1303 bp (1303 high quality bases) assembled on 2005-09-08

GenBank Submission: FJ629803

> BO04578.complete
GAAGTTATCAGTCGACATGTCGGAGGACCAAGGCAAAGACTACACACTGG
AGTCCGACTCCGAGCTGCGCTTTGAAATCGAGCAGAAGGATGCCAAAGTG
CTGGTGTCCCTGGTCAGTGGATTTGCGGAGCTGTTCGGCACGGAGCTGGT
GAAGAAAAAGCAGTACGAGTTCGGCGTGGGCGCCAAGGTGGCCATCTTCA
CGTACCAGGGCTGTGTACTCCACGTCTCCGGCAAAATGGACGTGTGCTAC
ATCTCCAAGGAGACGCCAATGGTGCAGTACGTCAACTGTCATGCGGCACT
GGAGCAGTTCCGCATGGAGGCCGAGGAGAAGGATCGCTACGGACCAGTGG
CCATGGTCGTCGGTCCCATGGACGTGGGCAAGAGCACTCTGTGCCGCATC
CTGCTTAACTATGCTGTGCGCGTGGGTCGTCGACCGCTGTACGCCGACCT
GGATGTTGGACAGGGCTCGATTGCCATTTCCGGGAGTGTGGCCACCATTC
TCATCGAGCGACCGGCGAACGTTGAGGAGGGATTCGCCAAGACAGCGCCG
CTGGTCTATCACTTTGGCCATAAGTCTCCCAGCGGAAACAGCGTGCTGTA
CAATGCCGTGGTTTCCAAAATGGCAGAGGTAACACTGCAATCTCTGAATA
GCAACAAGCGAACAAAAAGCTCTGGCATTATTATAAACACTTGTGGCTGG
GTAAAGGGATCCGGCTACGCGCACCTGTTGCACGCGGCCAAAGCCTATGG
AGCCTGTGCCATCTTTGTTCTGGACCAGGAGCGACTATACAACGAGCTGC
TTCGAGATGTTCCCAAGGGAGTTCATGTGGTACTGCTGCCCAAGAGCGGC
GGCGTCGTCGAGCGCAGCAAGGAACTGCGACACGAGGCGAGGGATCAGCG
CATCAAGGAGTACTTCTACGGCAATACAAGGGCGCCCTTCTATCCGTTCA
GCTTCGAGGTGAAGTTCCAGGACCTGCGACTCTACAAGATCGGCGCACCG
CCGCTGCCCGACTCCTGCATGCCAATTGGAATGAAGGCGGAGGACAACAA
GACCAAGGTGGTGGCGGTTACACCCACGCCCGCCCTAATCCATCATGTGC
TGGCCCTCAGCTTTGCCGAGTCCGTGGAGGACGATGTGATTGGCACCAAT
GTGGCCGGCTTTTGTTGCGTAACCGAAGTGGATATGGAAAGACAGGCAGT
GATGTTGCTTTCGCCGCAGCCGCGACCTTTGCCCCCGAACGCCCTGCTCC
TGTGGTCGGAACTGCAGTTCATGGATAATCATACCGCAAGCTTTCTAGAC
CAT

BO04578.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:01:48
Subject Length Description Subject Range Query Range Score Percent Strand
cbc-RA 1272 CG5970-PA 1..1269 17..1285 6345 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:01:49
Subject Length Description Subject Range Query Range Score Percent Strand
cbc-RA 1654 CG5970-RA 107..1376 16..1285 6350 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:01:46
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 13484571..13485123 662..110 2765 100 Minus
2R 25286936 2R 13483973..13484480 1170..663 2540 100 Minus
2R 25286936 2R 13483790..13483904 1285..1171 575 100 Minus
2R 25286936 2R 13485192..13485285 109..16 470 100 Minus
Blast to na_te.dros performed on 2014-11-28 00:01:47 has no hits.

BO04578.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:40:16 Download gff for BO04578.complete
Subject Subject Range Query Range Percent Splice Strand
CG5970-RA 1..1272 17..1286 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:09:22 Download gff for BO04578.complete
Subject Subject Range Query Range Percent Splice Strand
CG5970-RA 101..1388 1..1294 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:16:18 Download gff for BO04578.complete
Subject Subject Range Query Range Percent Splice Strand
cbc-RA 108..1376 17..1287 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:40:17 Download gff for BO04578.complete
Subject Subject Range Query Range Percent Splice Strand
CG5970-RA 101..1388 1..1294 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:24:55 Download gff for BO04578.complete
Subject Subject Range Query Range Percent Splice Strand
cbc-RA 108..1376 17..1287 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:24:55 Download gff for BO04578.complete
Subject Subject Range Query Range Percent Splice Strand
2R 13483786..13483904 1171..1287 98 <- Minus
2R 13483973..13484480 663..1170 100 <- Minus
2R 13484571..13485123 110..662 100 <- Minus
2R 13485192..13485284 17..109 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:16:18 Download gff for BO04578.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 9371291..9371409 1171..1287 98 <- Minus
arm_2R 9371478..9371985 663..1170 100 <- Minus
arm_2R 9372076..9372628 110..662 100 <- Minus
arm_2R 9372697..9372789 17..109 100   Minus

BO04578.pep Sequence

Translation from 16 to 1303

> BO04578.pep
MSEDQGKDYTLESDSELRFEIEQKDAKVLVSLVSGFAELFGTELVKKKQY
EFGVGAKVAIFTYQGCVLHVSGKMDVCYISKETPMVQYVNCHAALEQFRM
EAEEKDRYGPVAMVVGPMDVGKSTLCRILLNYAVRVGRRPLYADLDVGQG
SIAISGSVATILIERPANVEEGFAKTAPLVYHFGHKSPSGNSVLYNAVVS
KMAEVTLQSLNSNKRTKSSGIIINTCGWVKGSGYAHLLHAAKAYGACAIF
VLDQERLYNELLRDVPKGVHVVLLPKSGGVVERSKELRHEARDQRIKEYF
YGNTRAPFYPFSFEVKFQDLRLYKIGAPPLPDSCMPIGMKAEDNKTKVVA
VTPTPALIHHVLALSFAESVEDDVIGTNVAGFCCVTEVDMERQAVMLLSP
QPRPLPPNALLLWSELQFMDNHTASFLDH

BO04578.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:34:58
Subject Length Description Subject Range Query Range Score Percent Strand
cbc-PA 423 CG5970-PA 1..423 1..423 2191 100 Plus